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SgP5CS基因克隆和生物信息学分析
引用本文:金杭霞,董德坤,王伟,杨清华,朱丹华.SgP5CS基因克隆和生物信息学分析[J].浙江农业学报,2016,28(3):395.
作者姓名:金杭霞  董德坤  王伟  杨清华  朱丹华
作者单位:(1. 浙江省农业科学院 作物与核技术利用研究所,浙江 杭州 310021;2. 萧山区种子管理站,浙江 杭州 311201)
摘    要:利用同源克隆的方法,获得了碱蓬P5CS基因全长ORF,命名为SgP5CS。SgP5CS ORF全长2 151 bp,生物信息学软件预测其编码716个氨基酸组成的多肽,相对分子量为77 431.8 u, 等电点为5.71,为稳定的亲水性蛋白,无跨膜结构域。ClustalX多重序列比对发现SgP5CS编码的氨基酸序列与盐角草P5CS相似性为93%,与盐角草P5CS的亲缘关系最近,其次是甜菜。脯氨酸是生物体内重要的渗透调节剂,而Δ1 吡咯啉 5 羧酸合成酶则是植物合成脯氨酸的关键酶之一,SgP5CS的克隆将为进一步的功能分析鉴定基础。

关 键 词:碱蓬  P5CS  脯氨酸  

Molecular cloning and bioinformatics analysis of SgP5CS gene in Suaeda glauca
JIN Hang xia,DONG De kun,WANG Wei,YANG Qing hua,ZHU Dan hua.Molecular cloning and bioinformatics analysis of SgP5CS gene in Suaeda glauca[J].Acta Agriculturae Zhejiangensis,2016,28(3):395.
Authors:JIN Hang xia  DONG De kun  WANG Wei  YANG Qing hua  ZHU Dan hua
Institution:(1. Institute of Crops and Nuclear Technology Utilization, Zhejiang Academy of Agricultural Science, Hangzhou 310021, China;2. Seed Management Station of Xiaoshan District, Hangzhou 311201, China)
Abstract:A new gene, named as SgP5CS, was cloned by homologous cloning method from Suaeda glauca. Bioinformatics analysis showed that the open reading frame of SgP5CS gene was 2 151 bp, encoding 716 amino acids. The isoelectric point and the relative molecular weight of coded protein were 5.71 and 77.4318 u, respectively. Hydrophobic analysis indicated that SgP5CS was a hydrophilic protein and had no transmembrane domain. Nucleotide sequence Blast by ClustalX indicated that the coded protein of SgP5CS shared an identity of 93% with P5CS of Salicornia europaea. Δ1 pyrroline 5 carboxylate synthetase (P5CS) is a key enzyme in the synthesis of proline which is one of the important osmotic regulators in plants. Our research laid a foundation to further study the P5CS function in Suaeda glauca.
Keywords:Suaeda glauca  P5CS  proline  
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