Evaluation of loop‐mediated isothermal amplification (LAMP) assays based on 5S rDNA‐IGS2 regions for detecting Meloidogyne enterolobii |
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| Authors: | J H Niu H Jian Q X Guo C L Chen X Y Wang Q Liu Y D Guo |
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| Institution: | 1. Department of Plant Pathology, China Agricultural University, Beijing 100193;2. Tropical Crops Genetic Resources Institute, CATAS, Danzhou, Hainan 571737;3. Department of Vegetable Science, China Agricultural University, Beijing 100193, China |
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| Abstract: | A loop‐mediated isothermal amplification (LAMP) assay for detection of Meloidogyne enterolobii (Me‐LAMP) was developed based on the sequences of the 5S ribosomal DNA (5S rDNA) and intergenic spacer 2 (IGS2) segment. The LAMP amplification was achieved at 65°C isothermal conditions within 1–1·5 h. Its amplicons were confirmed using gel electrophoresis, SacI enzyme analysis, lateral flow dipstick (LFD) assay, and visual inspection through SYBR Green I and calcein staining. The results demonstrated that the Me‐LAMP was able to specifically detect M. enterolobii populations from different geographical origins, with a detection limit of about 10 fg M. enterolobii genomic DNA, which was 10–100 times more sensitive than conventional PCR. In addition, the applicability of LAMP to field detection was confirmed following its successful performance in detecting the pest on root and soil samples. The Me‐LAMP assay possessed the characteristics of simplicity, sensitivity and specificity, and is a promising and practical molecular tool for M. enterolobii diagnosis in pest quarantine and field surveys. |
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| Keywords: | loop‐mediated isothermal amplification (LAMP) Meloidogyne enterolobii molecular diagnosis root‐knot nematode |
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