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Development of an Isavirus minigenome system to study the function of the pocket RNA-binding domain of the viral nucleoprotein (NP) in salmon cells
Authors:Daniela Toro-Ascuy  Alvaro Santibañez  Victor Peña  Carolina Beltran-Pavez  Luis Cottet  Cristian Molina  Margarita Montoya  Nicolas Sandoval  Yesseny Vásquez-Martínez  Carolina Mascayano  Marcelo Cortez-San Martín
Affiliation:1. Facultad de Ciencias de la Salud, Instituto de Ciencias Biomedicas, Universidad Autónoma de Chile, Santiago, Chile;2. Laboratory of Molecular Virology and Pathogen Control, Department of Biology, Faculty of Chemistry and Biology, University of Santiago, Santiago, Chile;3. Laboratory of Molecular Virology and Pathogen Control, Department of Biology, Faculty of Chemistry and Biology, University of Santiago, Santiago, Chile

Escuela de Biotecnología, Facultad de Ciencias, University Santo Tomas, Santiago, Chile;4. Cellular Biochemistry Laboratory, Department of Biology, Faculty of Chemistry and Biology, University of Santiago, Santiago, Chile;5. Programa Centro de Investigaciones Biomédicas Aplicadas, Facultad de Ciencias Médicas, Universidad de Santiago, Santiago, Chile;6. Department of Environmental Sciences, Faculty of Chemistry and Biology, University of Santiago, Santiago, Chile

Abstract:The Isavirus is an orthomyxovirus with a genome composed of eight segments of negative single-strand RNA (−ssRNA). It has been proposed that the eight genomic segments of the Isavirus are organized as a ribonucleoprotein (RNP) complex called a minigenome, which contains all the viral RNA segments, a viral heterotrimeric polymerase and multiple copies of the viral nucleoprotein (NP). Here, we develop an Isavirus minigenome system and show the importance of the formation of active RNPs and the role of viral NP R189, R194, R302 and K325 residues in the NP RNA-binding domain in the context of RNPs. The results indicate it is possible to generate a minigenome in salmon cells, a composite ISAV RNPs with EGFP-based chimeric vRNA with heterotrimeric polymerase (PB1, PB2, PA) and NP protein using CMV-based auxiliary plasmids. It was also shown that NP R189, R194, R302 and K325 residues are important to generate viral mRNA from the constituted RNPs and a detectable reporter protein. This work is the first salmon cell-based minigenome assay for the Isavirus, which was evaluated by a bioinformatic and functional study of the NP protein in viral RNPs, which showed that correct NP-vRNA interaction is key to the functioning of RNPs.
Keywords:infectious salmon anaemia virus  minigenome assay  nucleoprotein  orthomyxovirus  salmon
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