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Large-scale copy number polymorphism in the human genome
Authors:Sebat Jonathan  Lakshmi B  Troge Jennifer  Alexander Joan  Young Janet  Lundin Pär  Månér Susanne  Massa Hillary  Walker Megan  Chi Maoyen  Navin Nicholas  Lucito Robert  Healy John  Hicks James  Ye Kenny  Reiner Andrew  Gilliam T Conrad  Trask Barbara  Patterson Nick  Zetterberg Anders  Wigler Michael
Affiliation:Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Abstract:The extent to which large duplications and deletions contribute to human genetic variation and diversity is unknown. Here, we show that large-scale copy number polymorphisms (CNPs) (about 100 kilobases and greater) contribute substantially to genomic variation between normal humans. Representational oligonucleotide microarray analysis of 20 individuals revealed a total of 221 copy number differences representing 76 unique CNPs. On average, individuals differed by 11 CNPs, and the average length of a CNP interval was 465 kilobases. We observed copy number variation of 70 different genes within CNP intervals, including genes involved in neurological function, regulation of cell growth, regulation of metabolism, and several genes known to be associated with disease.
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