牛病毒性腹泻病毒基因2型代表株全基因组序列分析

为了解我国牛病毒性腹泻(BVD)的分子流行病学情况,本研究对分离的3株牛病毒性腹泻病毒基因2型(BVDV-2)代表株全基因组进行序列分析,应用RT-PCR法分段扩增3株BVDV-2(XJ-04、SD-09和QH-09)的全基因组序列,共分为18个片段:A～Q以及5'-UTR和3'-UTR的部分序列。除5'-UTR和3'-UTR部分序列外,A～Q基因片段末端相互重叠。经序列拼接获得3株全基因组序列,全长均为12 284 bp。将测序结果与GenBank登录的瘟病毒科代表毒株序列、自我裂解酶(Npro)、结构蛋白(C、Erns、E1、E2)以及标准株BVDV-1 NADL和BVDV-2 890进行核苷酸以及氨基酸序列同源性分析。结果表明:XJ-04、SD-09和QH-09的全基因组序列同源性高于99.6%,3株BVDV-2分离株与890和NewYork93株亲缘关系最近,属于BVDV-2a亚型。在致细胞病变型的XJ-04、SD-09、QH-09株的NS2/3基因上无外源基因的插入。本研究分离的BVDV-2株为国内首次鉴定国内分离株全基因组序列,为我国BVD的分子流行病调查提供依据。

Genomic sequencing and characterization of bovine viral diarrhea virus genotype 2 isolate XJ-04

The complete genome sequence of bovine viral diarrhea virus genotype 2(BVDV-2) of XJ-04 isolate was constructed by ligation of 17 overlapping PCR fragments and the 5' UTR and 3' UTR sequences.The sequence data was registered and denoted in GenBank with accession number FJ527854.The genome was 12,284 nucleotide long and contained short 5' UTR,3' NCR,and one ORF encoding a large polyprotein of 3,895 amino acids with 20 potential N-glycosylation sites.The phylogram constructed with entire genome sequences and ...