Plant Viruses Transmitted by Whiteflies

One-hundred and fourteen virus species are transmitted by whiteflies (family Aleyrodidae). Bemisia tabaci transmits 111 of these species while Trialeurodes vaporariorum and T. abutilonia transmit three species each. B. tabaci and T. vaporariorum are present in the European–Mediterranean region, though the former is restricted in its distribution. Of the whitefly-transmitted virus species, 90% belong to the Begomovirus genus, 6% to the Crinivirus genus and the remaining 4% are in the Closterovirus, Ipomovirus or Carlavirus genera. Other named, whitefly-transmitted viruses that have not yet been ranked as species are also documented. The names, abbreviations and synonyms of the whitefly-transmitted viruses are presented in tabulated form together with details of their whitefly vectors, natural hosts and distribution. Entries are also annotated with references. Whitefly-transmitted viruses affecting plants in the European–Mediterranean region have been highlighted in the text.     

检测砂梨潜隐病毒的IC-RT-PCR和TC-RT-PCR的研究

以砂梨为试材,在生物学和血清学检测的基础上,采用免疫捕作RT-PCR穴IC-RT-PCR雪和试管捕作RT-PCR穴TC-RT-PCR雪技术,对苹果褪绿叶斑病毒(Applechloroticleafspotvirus,ACLSV)和苹果茎沟病毒(Applestemgroovingvirus,ASGV)进行了检测分析。结果表明,TC/IC-RT-PCR均能有效检测梨粗提液中的ACLSV和ASGV,分别获得了大小约358bp和499bp的目标扩增片段;但IC-RT-PCR检测ACLSV的效果受到病毒分离株间血清学关系影响。与传统的RT-PCR相比,IC/TC-RT-PCR不仅灵敏度更高,而且不需提取总RNA,可以简化操作程序和减少苯酚、氯仿类有机试剂对人体的伤害和对环境的污染,适合于大量梨样品的病毒快速灵敏检测。     

Isolation of two strains of a new Tombusvirus (Havel river virus, HaRV) from surface waters in Germany

Two virus isolates from water samples — one from a small stream in South Western Germany and another one from the Havel river in North Eastern Germany c. 500 km away, proved to be strains, named S and H, respectively, of a new Tombusvirus for which the name Havel river virus (HaRV) had been suggested previously in a brief account. Immunoelectron microscopical decoration tests and sequence comparisons of the coat proteins indicated that the two HaRV strains are only distantly related to known Tombusviruses. The closest relationships were found to Cucumber necrosis virus. Nothing is known about their natural hosts. Because the S strain of HaRV was isolated in a woody area from a small stream close to its origin, they may be pathogens of trees or wild plants in such habitats.     

我国马铃薯主产区病毒病发生情况调查

为了解我国马铃薯病毒病发生情况,在马铃薯主产区黑龙江、内蒙古、甘肃、云南等马铃薯田采集了具有典型病毒病症状的样品、疑似样品和随机无症样品,试管苗和原原种为随机样品,共649份。应用DASELISA方法筛查6种马铃薯主要病毒:PVX、PVY、PVS、PLRV、PVM和PVA。结果表明:129份样品为阳性,PVY的检出率最高,为9.86%,PVS次之,为6.47%;试管苗PVS检出最多,为32份,原原种PVX检出最多,为10份,大田样品PVY病毒发生比例最高,为54份;有38份样品是由多种病毒复合侵染造成的,大田PVY+PVS复合侵染率最高,为2.93%,PVS+PVY+PLRV次之,为0.98%,试管苗PVS+PVM复合侵染率最高,为4.85%。通过历年的检测结果比较,试管苗中PVS病毒检出率最高,原原种中PVX和PLRV病毒成为危害最为严重的病害,大田样品中PVY检出率一直居高不下。     

皖南黄肉种鸡种蛋中禽白血病病毒的感染状态检测

本研究首次通过检测种蛋中禽白血病病毒(ALV)评价了皖南黄父母代肉种鸡的ALV感染状态.收集该鸡群的120枚鸡蛋,取40枚鸡蛋孵化至9～11 d后分别制备CEF,培养10 d,取细胞上清用ELISA试剂盒检测ALV p27抗原.另取80枚鸡蛋卵白直接检测p27抗原,同时分别将80枚鸡蛋卵白接种CEF(DF1),培养10 d后取细胞上清检测p27抗原.比较p27阳性检出率的结果表明,受精蛋孵化9～11 d后制备CEF,再培养10 d的细胞上清检出率(10/36)高于直接检测卵白(17/80)与卵白接种CEF(DF1)的细胞上清(7/80).将经DF1培养后p27抗原阳性样品,用针对ALV-J的单抗JE9做IFA,ALV-J的阳性率为6/7.检测该80枚鸡蛋的卵黄抗体,ALV-J、ALV-AB的抗体阳性率分别为18/80、1/80.结果表明,该皖南黄父母代肉种鸡群存在的外源性ALV感染主要为ALV-J.该研究为ALV的净化提供了可行性检测方法.     

Randomly primed,strand-switching,MinION-based sequencing for the detection and characterization of cultured RNA viruses

RNA viruses rapidly mutate, which can result in increased virulence, increased escape from vaccine protection, and false-negative detection results. Targeted detection methods have a limited ability to detect unknown viruses and often provide insufficient data to detect coinfections or identify antigenic variants. Random, deep sequencing is a method that can more fully detect and characterize RNA viruses and is often coupled with molecular techniques or culture methods for viral enrichment. We tested viral culture coupled with third-generation sequencing for the ability to detect and characterize RNA viruses. Cultures of bovine viral diarrhea virus, canine distemper virus (CDV), epizootic hemorrhagic disease virus, infectious bronchitis virus, 2 influenza A viruses, and porcine respiratory and reproductive syndrome virus were sequenced on the MinION platform using a random, reverse primer in a strand-switching reaction, coupled with PCR-based barcoding. Reads were taxonomically classified and used for reference-based sequence building using a stock personal computer. This method accurately detected and identified complete coding sequence genomes with a minimum of 20× coverage depth for all 7 viruses, including a sample containing 2 viruses. Each lineage-typing region had at least 26× coverage depth for all viruses. Furthermore, analyzing the CDV sample through a pipeline devoid of CDV reference sequences modeled the ability of this protocol to detect unknown viruses. Our results show the ability of this technique to detect and characterize dsRNA, negative- and positive-sense ssRNA, and nonsegmented and segmented RNA viruses.     

建兰花叶病毒广东分离物的全基因组序列分析

【目的】建兰花叶病毒(Cymbidium mosaic virus,CymMV)是最主要的兰花病毒病原之一,其广泛传播对兰花产业发展造成严重威胁。探究CymMV遗传信息和进化,为广东省兰花病毒病的监测预警和兰花抗病毒病基因工程提供重要科学依据。【方法】对采自广州地区的墨兰疑似病毒病叶片进行CymMV的RT-PCR及DA-SELISA检测鉴定,利用相关分子生物学软件对CymMV分离物进行基因组序列组装、注释、系统进化及选择压力分析。【结果】首次在广东省发现2个CymMV分离物GZV013和ZC-29,基因组全长均为6227 nt,编码5个功能蛋白;GZV013与台湾分离物M2的核苷酸序列一致性为97.03%;ZC29与南京分离物NJ-1的核苷酸序列一致性为97.11%;CymMV各分离物的全基因组序列一致性为86.85%～98.31%,且多样性种群的分化与寄主种类和地理隔离关系密切;CymMV基因组每个区域均受到负选择的影响,并符合中性进化模型;编码RdRp、TGB1和TGB2的基因在基因组中变异率最高。【结论】GZV013与台湾分离物M2的亲缘关系最近,ZC29与南京分离物NJ-1的亲...     

贵州3种马铃薯病毒的DAS-ELISA检测与分析

应用DAS-ELISA法对从贵州省马铃薯种植区采集带症状的202份马铃薯叶片分别进行了PVX、PVY、PLRV 3种马铃薯病毒的检测。结果表明,3种马铃薯病毒在贵州马铃薯种植区表现出比较显著的田间症状,其病毒的发生与气候类型、种薯品种来源、种植方式存在相关性,并结合马铃薯实际生产对其病毒防治措施做了简要讨论。     

阿留申病毒大连株非结构蛋白基因的克隆与序列分析

根据Genbank上发表的水貂阿留申病毒基因序列数据,设计了3对引物,采用PCR的方法分别对ADV-DL1、ADV-DL2株非结构蛋白基因进行扩增,将各片断克隆至pMD18-T载体,经PCR鉴定后进行了序列测定和分析。结果显示,ADV-DL1、ADV-DL2与GenBank上公布的ADV毒株相比,核苷酸序列同源率NS1为85.9%~90.0%,NS2为85.1%~92.7%,NS3为83.0%~95.1%。ADV-DL1与ADV-DL2同源率NS1为93.7%,NS2为95.6%,NS3为98.5%。氨基酸同源率NS1为82.8%~85.8%,NS2为80.7%~92.1%,NS3为72.9%~95.4%。ADV-DL1与ADV-DL2同源率NS1为90.3%,NS2为92.1%,NS3为95.4%。