魔芋软腐病病原菌TaqMan荧光探针PCR技术的建立及应用

为实现对田间土壤软腐病病原菌的定量检测,基于魔芋软腐病优势病原菌胡萝卜软腐果胶杆菌胡萝卜亚种Pectobacterium carotovorum subsp. carotovorum的FyuA基因序列,设计特异性引物PCC1/PCC2/PCC3,建立TaqMan荧光探针实时荧光定量PCR技术,并对魔芋根系土壤中软腐病病原菌进行动态监测。结果显示:基于FyuA基因序列设计的引物特异性好,仅能特异性检出胡萝卜软腐果胶杆菌胡萝卜亚种;当模拟带菌土壤中病原菌浓度低至1.88 CFU/g时也能检出,灵敏度高;发病魔芋根际土壤中软腐病病原菌检出率为100.00%,病原菌DNA浓度最高达到了7.52×10~7ng/μL,健康魔芋根际土壤中也存在病原菌,检出率为40.00%;不同种植模式中,林下魔芋土壤中软腐病病原菌数量较少;连作时间与病原菌数量、病情指数存在正相关关系,连作时间越长,病原菌积累越多,魔芋病情指数也越高,魔芋连作4年土壤中病原菌DNA浓度最高达到4.03×10~4ng/μL;对魔芋土壤软腐病病原菌进行全年监测,病原菌数量随着月份增长逐渐上升,在8—10月达到峰值543.20 ng/μL后下降,病原菌数量与魔芋病情指数变化规律一致,但田间魔芋软腐病的发生相对滞后。表明建立的TaqMan荧光探针实时荧光定量PCR技术可用于田间魔芋软腐病的监测。     

复配抑菌剂对青椒细菌性软腐病防治及保鲜效果研究

为研发适用于青椒细菌性软腐病防治及青椒保鲜的复配抑菌剂,分别研究了ε-聚赖氨酸、乳酸链球菌素、曲酸对细菌性软腐病的抑制效果,基于单因素抑菌试验结果,运用响应面试验优化复配抑菌剂配方,并将所得最佳复配抑菌剂用于青椒保鲜试验。结果表明,复配抑菌剂的最佳配方为:ε-聚赖氨酸161.50 mg/L,曲酸13.34 g/L,乳酸链球菌素181.00 mg/L,其对胡萝卜软腐果胶杆菌的实际抑菌率可达95.33%,与预测值95.50%相近。青椒保鲜试验发现,复配抑菌剂能有效维持青椒叶绿素、VC及可溶性固形物含量,降低失重率和抑制相对电导率的上升,有助于维持青椒感官品质。     

The use of two complementary DNA assays,AFLP and MLSA,for epidemic and phylogenetic studies of pectolytic enterobacterial strains with focus on the heterogeneous species Pectobacterium carotovorum

Amplified fragment length polymorphism (AFLP) markers and multilocus sequence analysis (MLSA) were used to analyse 63 bacterial strains, including 30 soft‐rot‐causing bacterial strains collected from Syrian potato fields and 33 reference strains. For the MLSA, additional sequences of 41 strains of Pectobacterium and Dickeya, available from the NCBI GenBank, were included to produce a single alignment of the 104 taxa for the seven concatenated genes (acnA, gapA, proA, icd, mtlD, mdh and pgi). The results indicate the need for a revision of the previously classified strains, as some potato‐derived Pectobacterium carotovorum strains were re‐identified as P. wasabiae. The strains that were classified as P. carotovorum during the analyses demonstrated high heterogeneity and grouped into five P. carotovorum highly supported clusters (PcI to PcV). The strains represented a wide range of host plants including potatoes, cabbage, avocados, arum lilies, sugar cane and more. Host specificity was detected in PcV, in which four of the six strains were isolated from monocotyledonous plants. The PcV strains formed a clearly distinct group in all the constructed phylogenetic trees. The number of strains phylogenetically classified as subspecies ‘P. c. subsp. brasiliensis’ in PcIV dramatically increased in size as a result of the characterization of new isolates or re‐identification of previous P. carotovorum and P. atrosepticum strains. The P. carotovorum strains from Syria were grouped into PcI, PcII and PcIV. This grouping indicates a lack of correlation between the geographical origin and classification of these pathogens.     

植物软腐病防御反应分子机制研究进展

软腐病是世界范围内多种温带、亚热带植物包括很多经济上重要的农作物所发生的一种严重的细菌性病害。对于软腐病原菌的入侵,植物体内存在一系列防御机制。围绕软腐果胶杆菌（Pectobacterium sp.）侵染植物诱导产生的多种防御反应,包括氧化应激反应和SA、JA/ET、ABA和蛋白激酶介导的信号传导反应以及铁蛋白等参与的防御反应从分子水平进行了综述,探讨了目前研究中存在的问题,并对今后的工作进行了展望。     

Disinfection using ozone microbubbles to inactivate Fusarium oxysporum f. sp. melonis and Pectobacterium carotovorum subsp. carotovorum

To establish a method for disinfecting hydroponic culture solutions using ozone microbubbles (OMB), we examined the disinfectant activity of OMB against Fusarium oxysporum f. sp. melonis and Pectobacterium carotovorum subsp. carotovorum in infected plant roots. OMB had a higher solubility and remained in the water for a longer period than ozone millibubbles, resulting in extremely high disinfecting activity against both phytopathogens. Furthermore, disinfectant activity and durability of OMB-treated water against both phytopathogens increased with an increase in the initial concentration of dissolved ozone. Therefore, these results suggest that OMB may be suitable for use as a new disinfectant against phytopathogens in hydroponic culture solutions.     

蔬菜细菌性软腐病防治药剂活体组织筛选技术

为探索快速、高效的蔬菜细菌性软腐病防治药剂的筛选技术,采用多因素分析法对茎段材料、接种方式、菌液浓度等因素进行筛选,建立芹菜茎段筛选技术,并采用所建立的筛选法评价28种枯草芽胞杆菌Bacillus subtilis可湿性粉剂对细菌性软腐病菌的杀菌活性。结果表明,建立的芹菜茎段筛选法可较好地评价细菌性软腐病防治药剂的药效,即芹菜茎段一端在细菌性软腐菌液中浸泡20 min后自然风干,再于待测药剂中浸泡处理1 h,在温度26~30℃、相对湿度70%~85%条件下保湿培养36 h后调查发病指数。采用该方法可快速从23种新型枯草芽胞杆菌可湿性粉剂中筛选出对细菌性软腐病具有较高防效的IVF001、IVF002、IVF004、IVF015、IVF018、IVF021、IVF035、IVF041制剂,防效分别为81.70%、94.77%、83.01%、92.16%、84.31%、96.08%、80.39%和89.55%。芹菜茎段筛选法及室内盆栽法对5种已登记的枯草芽胞杆菌可湿性粉剂的筛选结果显著相关,相关系数为0.878。表明芹菜茎段筛选法可以有效代替盆栽筛选法,并对杀菌剂的药效进行评价,是一种实用性强的蔬菜细菌性软腐病防治药剂筛选方法。     

杨树湿心材病致病细菌的分离、鉴定和侵染途径

采用常规的组织分离法从杨树湿心材病发病心材组织中分离到10个优势菌株,将菌株分别回接健康杨树实生苗,通过侵染症状、发病率和发病程度等测定致病性,结果发现2-16号菌株能引起典型的湿心材症状,即心材变色并腐烂。对2-16菌株形态特征、生理生化进行了分析,2-16菌株16SrDNA基因序列与胡萝卜软腐果胶杆菌胡萝卜软腐亚种(Pectobacterium carotovorumsubsp.carotovorum)NBRC 14082菌株报告的序列相似度为99%。采用Mega5.0软件以相近序列构建的进化树中,2-16菌株和NBRC 14082菌株聚在同一进化枝上。鉴定2-16号致病菌为胡萝卜软腐果胶杆菌胡萝卜软腐亚种。以温室栽培的当年生中石7杨树实生苗为接种材料,将2-16号致病菌分别通过4种方式进行侵染接种,结果表明:茎刻伤和茎注射2-16致病菌株均能引起杨树植株发病,茎注射法发病率、病斑扩散长度和发病指数均高于茎刻伤法,而叶接和灌根接种2-16致病菌株均不能使杨树感病,表明茎部伤口感染是该致病菌侵染杨树的主要途径。     

岚皋魔芋软腐病病原细菌生物多样性研究

【目的】研究岚皋魔芋软腐病病原细菌生物多样性。【方法】采用组织分离法分离纯化魔芋软腐病球茎及叶柄中的致病菌,通过魔芋球茎、胡萝卜及马铃薯块的侵染试验初步确定其致病性,再利用魔芋球茎侵染致病及盆栽致病性试验确认其致病性;经菌落与细胞形态、生理生化特性及16SrRNA序列测定确定病原菌的类型。【结果】从魔芋软腐病球茎及叶柄中共分离获得16株细菌,侵染试验表明,其中CDS1-B1、CDS1-B2、CDS2-B1、CDS2-B2、CZS-B4和CZS-B6共6株细菌可使魔芋球茎表现软腐症状,并导致盆栽魔芋发病;6株细菌的菌落与细胞形态均存在差异;在魔芋、胡萝卜及马铃薯块上的侵染能力不同;16SrRNA序列分析表明,菌株CDS1-B1、CDS1-B2、CDS2-B1及CDS2-B2均与菊欧氏杆菌(Erwinia chrysanthemi)亲缘关系最近,菌株CZS-B4与菊欧文氏菌(Dickeya dadantii)亲缘关系最近,相似度为98.8%,菌株CZS-B6与菊果胶杆菌(Pectobacterium chrysanthemi)的相似度达99.9%。【结论】导致岚皋县魔芋软腐病的致病细菌存在生物多样性,其致病性也存在差异,其中新发现的魔芋软腐病原菌菊果胶杆菌(Pecto-bacterium chrysanthemi)致病性最强,菊欧氏杆菌(Erwinia chrysanthemi)和菊欧文氏菌(Dickeya dadantii)致病性较弱。     

Characterization of Pectobacterium brasiliense strains from potato and vegetables in Israel

Pectobacterium brasiliense (Pbr) infects a wide range of crops worldwide, causing potato blackleg and soft rot and vegetable soft rots. This study aimed to characterize the genetic diversity and virulence variability among 68 Pbr strains isolated from either symptomless potato progeny tubers, diseased potato plants, ware potatoes wash water, or vegetables grown in Israel, as well as strains isolated from symptomless seed tubers grown in Europe, or diseased potato plants grown in France. The collection was typed using PCR and TaqMan real-time PCR analyses, dnaX sequence analysis, pulsed-field gel electrophoresis (PFGE), and pectolytic activity. dnaX phylogeny grouped almost all strains in a common genetic clade related to Pbr, which was distinct from the other Pectobacterium species. PFGE analysis identified two main clusters, including one major group of 47 strains with 95%–100% similarity. Maceration assays on two potato cultivars showed significant differences between strains but with no correlations with the source of the strains nor the status of the host (with/without symptoms). Molecular (dnaX sequences and PFGE profiles) and phenotypic analyses (tuber maceration tests) showed that the tested Pbr strains are not a homogeneous group. Analysis of the tested Pbr strains isolated from potato and vegetables grown in fields with a history of potato cultivation suggests that seed tubers imported from Europe may be the main source for Pbr in Israel. To the best of our knowledge, this is the first study that describes biodiversity and population structure of P. brasiliense isolated from potato and vegetables under hot climate conditions.     

Genes responsible for coronatine synthesis in <Emphasis Type="Italic">Pseudomonas syringae</Emphasis> present in the genome of soft rot bacteria

Primers for the PCR amplification of homologous genes encoding polyketide coronafacic acid and coronafacic ligase in the cells of Pectobacterium atrosepticum SCRI1043 (BX950851) were developed to study the presence of these genes in the genome of Pectobacterium sp. and Dickeya sp. Coronafacic ligase catalyses the formation of coronatine from polyketide coronafacic acid and coronamic acid. Coronatine is a toxin produced by Pseudomonas syringae and is one of the major virulence factors in this bacterium. This study using several strains of P. atrosepticum, P. carotovorum subsp. carotovorum and Dickeya sp. isolated in different countries, indicated that all strains of P. atrosepticum possess genes coding coronafacic acid (cfa gene cluster) and coronafacic ligase (cfl). However, these genes were present only in the genome of five out of 50 tested P. carotovorum subsp. carotovorum strains and two out of 34 strains of Dickeya sp. tested. The PCR products homologous to the sequence of cfa7 and cfl gene fragments were sequenced in order to check the level of homology between genes of P. atrosepticum, P. carotovorum subsp. carotovorum and Dickeya sp. The sequences of the gene fragments amplified from all P. atrosepticum strains were almost identical (100% and 99.97%, respectively). The homology of the sequences obtained for P. atrosepticum and sequences of five P. carotovorum subsp. carotovorum and two Dickeya sp. was lower, between 89.69% to 95.00% for the cfl gene fragment, and about 94% for the cfa7 gene fragment.