The microbial diversity and structure in peatland forest in Indonesia

The microbial community structure and function under forest in tropical peatlands are poorly understood. In this study, we investigated the microbial community structure and diversity in natural peat swamp forest soil, disturbed peat soil and mineral soil in Central Kalimantan, Indonesia, using 454 pyrosequencing. The results showed that the natural peat soil had the greatest fungal species richness (Chao1), which was significantly (p < .05) larger than that in the other two soils. Community structure of both fungi and bacteria in natural peat soil differed significantly from that in the disturbed peat soil (p = .039 and p = .045, respectively). Ascomycota (40.5%) was the most abundant phylum across the three soils followed by Basidiomycota (18.8%), Zygomycota (<0.1%) and Glomeromycota (<0.1%). The linear discriminant analysis with effect size (LEfSe) showed that Ascomycota (p < .05) and genus Gliocephalotrichum (p < .05) dominated in natural peat soil. Functionally, pathotrophs were more abundant in disturbed peat soil (p < .05). Proteobacteria (43.8%) were the most abundant phylum followed by Acidobacteria (32.6%), Actinobacteria (9.8%), Planctomycetes (1.7%). Methylocystis, Telmatospirillum, Syntrophobacter, Sorangium and Opitutus were the more abundant genera in disturbed peat soil, whereas Nevskia and Schlesneria were more abundant in mineral soil and natural peat soil, respectively. The natural peat forest soil supported a more diverse microbiology; however, the land use of such a soil can change its microbial community structure. The results provide evidence that the disturbance of tropical peat land could lead to the introduction and spread of a large number of fungal diseases     

Effect of cyclodextrin diallyl maleate on methane production, ruminal fermentation and microbes in vitro and in vivo

Effects of β‐cyclodextrin diallyl maleate (CD‐M) on methane production, ruminal fermentation and digestibility were studied both in vitro and in vivo. In in vitro study, diluted ruminal fluid (30 mL) was incubated anaerobically at 38°C for 6 and 24 h with or without CD‐M using hay plus concentrate (1.5:1) as a substrate. The CD‐M was added at different concentrations (0, 1.25, 2.5, 5.0 and 7.5 g/L). The pH of the medium and numbers of protozoa were not affected by the addition of CD‐M. Total volatile fatty acids were increased and ammonia‐N was decreased, molar proportion of acetate was decreased and propionate was increased (P < 0.05) by CD‐M. Methane was inhibited (P < 0.05) by 14–76%. The effect of CD‐M on methane production and ruminal fermentation was further investigated in vivo using four Holstein steers in a cross‐over design. The steers were fed Sudangrass hay and concentrate mixture (1.5:1) with or without CD‐M (2% of feed dry matter) as a supplement. Ruminal proportion of acetate tended to decrease and that of propionate was increased (P < 0.05) 2 h after CD‐M dosing. Total viable counts, cellulolytic, sulfate reducing, acetogenic bacteria and protozoa were unaffected while methanogenic bacteria were decreased (P < 0.05) by CD‐M. The plasma concentration of glucose was increased, whereas that of urea‐N was decreased (P < 0.05). Methane was inhibited (P < 0.05) from 36.4 to 30.1 L/kg dry matter intake by the addition of CD‐M. Apparent digestibilities of dry matter and neutral detergent fiber were not affected while that of crude protein was increased (P < 0.05) in the medicated steers. These data suggested that dietary supplementation of CD‐M decreased methane production and improved nutrient use.     

人工养殖西伯利亚狍肠道微生物组成的雌雄差异

肠道微生物是一个复杂的生态系统,与宿主的健康、疾病以及其他因素有着密切的关系。目前,关于肠道菌群结构和功能的研究较多,但是对西伯利亚狍肠道菌群的研究还未见报道。西伯利亚狍(Capreolus pygargus)属于反刍动物,有独特的消化特性和微生物群来帮助它们适应高纤维的食物。本研究利用高通量测序技术在Illumina MiSeq平台上对14只狍肠道微生物进行16S rRNA基因分析。结果表明:个体样本中门类组成的差异,雌性个体JY3和雄性个体JY9除Firmicutes,Bacteroidetes,Proteobacteria这3类菌群外,其他门类菌群所占比例都很低。在科水平上,雌性个体中Ruminococcaceae在JY7和JY13肠道内含量相对较少,Bacteroidaceae在JY7,JY10和JY13中含量较高。雄性个体中Ruminococcaceae在JY11和JY14肠道内含量较少,Prevotellaceae在JY4中含量较少。在属水平上,雌性个体特有的菌属为Roseburia,Alloprevotella,Lachnospiraceae_incertae_sedis和Coprococcus;雄性个体特有的菌属为Fusobacterium,Succiniclasticum,Streptococcus和Clostridium sensu stricto。Alpha多样性分析表明,Ace指数范围2128.93—772.98,Chao1指数范围2128.89—785.27,Shannon指数范围5.44—3.78,Simpson指数范围0.07—0.01。在不同物种分类水平上,雌雄狍肠道内的优势菌群有些不同。PCoA(principal co-ordinates analysis)分析显示,狍样本几乎混在一起,没有明显差异。     

连作根系分泌物加剧土传病害的机制和缓解措施研究进展

基于植物-土壤反馈理论,连作体系中的根系分泌物必然在加剧土传病害发生中起重要作用,但相关研究证据尚缺少系统总结。本文梳理了连作导致土传病害加剧的现象以及连作对典型根系分泌物组分的累积。从有利于土传病原菌由土体向根际迁移、增殖和致病（“利病”）、破坏根际有益微生物群落防线（“压益”）和毒害根系免疫系统（“自毒”）等三个方面,揭示连作根系分泌物中某些物质促进土传病原菌入侵的机制。从根系分泌物角度阐述轮作、间作、套作、伴生和嫁接等多样性种植方式缓解连作土传病害的机制。提出鉴定“利病”、“压益”和“自毒”物质以及构建对应的消减技术途径,可为土传病害绿色高效综合防控提供理论和技术支撑。     

杨树根际土壤磷吸附特性的研究

对滨海脱盐土壤上11年生1-69杨根际、非根际土壤磷吸附特性进行了研究。结果表明,I-69杨根系活动能抑制根际土壤对磷的吸附,抑制能力与培养溶液起始磷浓度相关,当培养溶液起始磷浓度为30 mg／L时,抑制能力最大,根际、非根际土壤磷吸附量之差为-15．57 mg／kg;I-69杨根际、非根际土壤磷恒温吸附数据都能很好地用一元 Langmuir方程、Freundich方程和Temkin方程拟合,其中一元Langmuir方程拟合最好;根际土壤磷吸附容量参数Xm,k, k1,k2的值明显低于非根际土壤,相关分析表明,它们与土壤有效磷含量呈显著负相关。     

间作栽培对宁夏南部山区马铃薯根际土壤真菌菌群结构的影响

根据宁夏南部山区气候和作物的生长特点,设计马铃薯‖玉米（P‖M,行比分别为4∶1,3∶2, 2∶3）、马铃薯‖蚕豆（P‖F,行比同前）、马铃薯不同品种（A‖B‖C,行比1∶1∶1）间作栽培模式,以马铃薯连作为对照,研究马铃薯根际土壤真菌多样性和菌群结构的变化,探寻能够减轻宁夏南部山区马铃薯连作障碍的有效栽培模式。采用基于18S rDNA的末端标记限制性片段长度多态性 (Terminal restriction fragment length polymorphism,T-RFLP) 技术研究不同间作栽培模式下马铃薯根际土壤真菌的菌群结构和多样性变化,构建真菌ITS克隆文库,利用Genbank数据库比对各栽培模式中ITS序列的测序结果,并作群落结构组成和功能分析。结果表明,马铃薯间作栽培后真菌Shannon-Wiener指数和Simpson指数均有不同程度降低;马铃薯与玉米、蚕豆间作后根际土壤真菌的物种丰富度在门、纲和目的分类学水平上与连作相比明显下降,菌群结构发生较大变化,成熟期马铃薯‖玉米3∶2行比间作模式与连作的差异最大,属的比例下降67.74%。间作栽培后,黑孢属（Nigrospora）、地丝霉属（Geomyces）、圆盘菌属（Orbilia）、枝顶孢属（Acremonium）、四枝孢属（Tetracladium）等9个属的真菌消失,同时新增刺盘孢属（Colletotrichum）、毛壳属（Chaetomium）、巨孢囊霉属（Gigaspora）、小球腔菌属（Pleosporineae）等13个属的真菌,其中马铃薯‖玉米3∶2行比间作后巨孢囊霉属比例高达60.35%。可见,马铃薯‖玉米间作栽培能有效改善马铃薯根际土壤的真菌菌群结构,使其微环境得以改善,缓解宁夏南部山区马铃薯连作障碍。     

保护性耕作对土壤团聚体、微生物及线虫群落的影响研究进展

保护性耕作具有良好的生态效益,有利于农业生态系统的可持续发展。本文对比分析了国内外有关常规耕作和保护性耕作措施对土壤团聚体、土壤有机碳、土壤微生物及土壤线虫影响的研究进展。结果表明：保护性耕作减少土壤大团聚体的破坏,降低团聚体周转速率,提高土壤结构的稳定性;保护性耕作提高表层土壤总有机碳及活性有机碳含量;保护性耕作可以提高耕层微生物生物量,尤其对真菌生物量影响显著;保护性耕作不同程度地提高了团聚体中微生物量和微生物多样性,但并未改变微生物在团聚体中的分布模式;保护性耕作可提高土壤线虫多度,提高原状土壤和土壤各粒级团聚体中线虫群落的成熟度指数和结构指数,但并未改变线虫总数、营养类群、功能团及生态指数在团聚体中的分布模式。针对目前国内外研究现状,展望了保护性耕作今后的研究重点,以期为因地制宜选取保护性耕作措施提供理论支持,推进我国农业可持续发展。     

芳香植物精油对竹子根际微生物种群的影响

竹林生态系统虽然比较稳定,但病原菌也较多,使用生物农药是竹林可持续发展的必然道路。许多芳香植物精油具有优良的抗菌活性,都有作为生物农药的潜力。但是竹林土壤微生物也可能受到精油抑菌性能的影响。本研究选取常见5种芳香植物精油香茅、肉桂、大蒜、生姜和茶树精油,对其化学成分进行鉴定并对毛竹实生盆栽苗的土壤进行处理,测定毛竹根际土壤微生物的细菌丰度和种群多样性。结果表明,5种精油会降低毛竹根际微生物的丰度和多样性,使变形菌门的细菌成为绝对优势菌群。对微生物的影响从大到小依次是香茅、生姜、茶树、肉桂和大蒜精油。     

冀北水稻田土壤细菌群落结构和多样性研究

为探讨冀北水稻田土壤细菌群落结构和多样性,以承德地区水稻主产区（河北隆化,河北滦平）稻田土壤为试验材料,采用高通量测序技术,对水稻大田土壤细菌群落结构和多样性进行研究。结果表明：不同地区水稻田土壤微生物多样性存在差异,其中样本ZYY.CKD9中微生物多样性最高且有益菌较多,主要有硫杆菌属（Thiobacillus）、拟衣藻属（Dechloromonas）和地杆菌属（Geobacter）;但也存在共有细菌菌群,如Kaistobacter、溶杆菌属（Lysobacter）、乳酸杆菌属（Lactobacillus）、Candidatus_Solibacter、硫杆菌属（Thiobacillus）、红长命菌属（Rubrivivax）、拟衣藻属（Dechloromonas）、Anaeromyxobacter、硝化螺旋菌属（Nitrospira）等;PCA分析结果显示,土壤细菌群落结构空间相关性不明显。这为冀北水稻田土壤修复、病害防治及功能菌肥开发,促进水稻高产栽培提供依据。     

黄河下游滩地杨树人工林土壤微生物分析

对山东省济南市长清区黄河下游滩地杨树人工林林地土壤微生物数量及分布特征进行了分析,结果表明:滩地杨树人工林土壤微生物主要分布在0～20cm的土层,20～50cm土层的微生物较少;各林地土壤微生物数量明显高于新淤地微生物数量;细菌是滩地杨树人工林林地土壤微生物的主要组成成分,在上、下层土壤中所占比例分别为81.7%～99.1%和75.1%～98.8%;土壤微生物数量随林龄的增长呈现高—低—高的变化趋势,但至林木主伐前,固氮菌和纤维素分解菌数量有所降低;不同管理模式影响微生物的数量,集约经营管理的林分土壤微生物数量较多;滩地杨树人工林土壤微生物数量与土壤颗粒组成密切相关。