Open-design Recirculating Systems for Zebrafish Culture

The zebrafish is an established vertebrate-animal model in biomedical research. Currently, their mass culture is mainly done using systems provided by commercial suppliers. Commercial systems are compact, recirculating, and use auto-cleaning tanks. These features minimize space use, labour cost, and water wastage; thus, facilitating maintenance of a large number of zebrafish using minimal resources. However, the often considered costs associated with these systems often impose a barrier to current and prospective researchers, especially those with limited funds or working in labs with no access to institutional centralized zebrafish culture facilities. In contrast to commercial systems, custom-made zebrafish maintenance systems are also described in the literature. To distinguish custom-made system from commercial systems, we termed them as “open-design” systems. Open-design systems are cost-effective, modular, and frequently being improved by zebrafish researchers. However, for further development and to present them as a viable option for zebrafish researchers around the world, a review of their current status and technical understanding is required. Here, we compile the disparate data on the purpose and technological development of the open-design systems. We believe this review will be a valuable resource for all zebrafish users and help streamline the open-design technology for zebrafish culture.     

Experimental investigation on the transport of different fish species in a jet fish pump

A jet fish pump with a throat of ø60 mm was designed to study its performance in the transport of different fish species and the physiological changes in fish thereafter. Experiments were conducted to investigate the fish transport rate and energy required to transport each ton of fish when transporting Carassius auratus, commonly known as the Chinese goldfish, Megalobrama amblycephala, or Wuchang bream, and Ctenopharyngodon idella, the grass carp. Fish were examined for external injuries as well as for several important enzymes and hormones which are indicators of tissue injury and stress. The results showed that the transport rate for all three species of fish rose dramatically with an increase in the primary stream rate. In this experiment, the transport rates of C. auratus, M. amblycephala and C. idella reached 2357 ± 37.2 kg ∙ h⁻¹, 2888 ± 41.6 kg ∙ h⁻¹, and 2060 ± 40.2 kg ∙ h⁻¹, respectively. However, both injury rate and energy required to transport each ton of fish increased no matter whether the primary stream rate was too low or too high. Considering both transport rate and injury rate, the mean primary stream rate of 80 m³ ∙ h⁻¹ was determined to be the optimal operating condition in this experiment. Fish were stressed and most likely some of their organs were damaged. However, most physiological indexes almost fully recovered after several hours.     

高蛋白料精等量替代鱼粉饲喂肥育猪对比试验

应用高蛋白料精等量替代鱼粉饲喂肥育猪 ,其结果在 42d试验期内高蛋白料精组头均增重 19.0 6kg ,比鱼粉组多增重 2 .12kg ,增重率提高 12 .5 2 %,头均多增收益 2 1.2 1元 ,差异显著 (P <0 .0 5 )。     

Estimating dispersibility of Acer,Fraxinus and Tilia in fragmented landscapes from patterns of seedling establishment

Relative dispersibility of Tilia americana L., Acer saccharum Marsh. and Fraxinus pennsylvanica Marsh, was inferred from the ratio among species-specific regression coefficients () computed from seedling density-distance plots. Density counts were made in spatially-uniform old fields adjacent to single seed sources or monotypic fencerows. Resultant seedling shadow curves approximate the negative exponential form expected for many seeds (log y=a–X). This basic curve shape fit species of differing dispersibility, dispersal under a range of wind directions and one-year-old or all-aged cohorts. The ratios of were 1:2.6:3.2 for Tilia, Acer and Fraxinus, respectively, in order of increasing dispersibility. Vegetation patches isolated from seed sources by several hundred meters or more should have extremely low input of seeds, especially Tilia and Acer.The finding that Fraxinus disperses farther than Acer was unexpected, since the samaras of the former have faster terminal velocities. The relationship can be explained by better performance of Fraxinus samaras in the stronger winds experienced by trees in open landscapes, poorer formation of the samara abscission layer, and release of samaras following leaf abscission and during the winter when winds are the strongest. Both the samara plan and dispersal phenology need to be considered in estimating relative dispersibility among species.     

Periodicity and gradients in dispersal ofAlternaria linicola in linseed crops

Conidia ofAlternaria linicola produced on infected linseed crops were mainly dispersed by wind. The numbers of conidia in the air above linseed crops collected by a Burkard spore sampler were greatest between 1200 h and 1300 h, when the relative humidity was lowest. Although numbers of conidia collected decreased with increasing height within and above the crop canopy, air-borneA. linicola conidia were present up to 80 cm above the crop canopy. Conidia ofA. linicola were transported by wind up to at least 40 m downwind from an artificial line inoculum source, but their numbers decreased with increasing distance from the source. In 1991, 1992, and 1993, the dispersal ofA. linicola conidia above linseed crops followed a seasonal periodicity which was influenced by weather conditions and cultural practices. The greatest numbers of conidia were collected during July, August and early September and coincided with periods favourable for sporulation and with an increase in the incidence of the disease in the senescent crop. Air-borneA. linicola conidia produced on point or line inoculum sources (naturally infected linseed stem debris) were responsible for the spread of the disease in linseed crops. In 1992 and 1993, the disease was first detected downwind from the sources, but by the end of the growing seasons, it had spread in all directions and up to 20 m and 60 m from the sources, respectively. Disease gradients were initially steep near the inoculum sources but they became flatter with time due to the secondary spread of the disease.     

The effect of non-inversion tillage and light availability on dispersal and spatial growth of Cynodon dactylon

The invasive ability of Cynodon dactylon is dependent on self dispersal and on cultivation practices. Tillage can seriously change patch biomass and spatial structure, spreading vegetative propagules of the weed. The objectives of this study were: (i) to quantify the effect on non‐inversion tillage on dispersal, establishment and colonization of C. dactylon and (ii) to propose a simple model considering soil cultivation effects and light availability on spatial growth of weed patches. Two experiments were carried out, exploring different soils and environmental conditions. Spatial distribution of vegetative units differed when tillage was conducted with different non‐inversion implements and could be described by simple functions. A minimum patch biomass seems necessary before vegetative structures are vulnerable to movement by cultivation. Only a small proportion of the biomass dispersed from original patches was able to establish. However, simulation showed that the area colonized by C. dactylon mostly increased by means of tillage dispersal, both with and without crop competition, in one growing cycle. It appears sensible to consider changing cultivation practices to reduce weed dispersal and to use crop competition for light to create unsuitable habitats limiting weed colonization.     

Spatial distribution of Lolium rigidum seedlings following seed dispersal by combine harvesters

This paper considers the relationships between the dispersal of seeds and the distribution pattern of an annual weed. A comparative study of seed dispersal by combine harvesters, with and without a straw chopper attached, was established using Lolium rigidum, a common weed in Mediterranean cereal crops. Seed dispersal distance was quantified and the relationships between dispersal and fine‐scale seedling distribution evaluated. Primary dispersal of L. rigidum seeds occurs in a very limited space around the parent plants, but the density of seed is low because most seeds do not fall from spikes spontaneously. In contrast, many seeds are spread by combine harvesters. In this study the maximum dispersal exceeded 18 m from established stands in cereal fields, although the modal distance was close to the origin. In addition, the action of the combine harvesters tended to accumulate L. rigidum seeds predominantly under the straw swath, with some lateral movement. This action could explain the fine‐scale banded pattern of L. rigidum in cereal fields. Although the treatment of straw by the standard and straw chopper combines differed, the resultant seed distribution showed few differences.     

Awn of darnel (Lolium temulentum L.) as an anthropogenic dispersal organ: A case study in Malo, south-western Ethiopia

Darnel ( Lolium temulentum ), a weed of wheat and barley, is either awned or awnless. The role of the darnel awn in dispersal was investigated in relation to human's agricultural practices in cereal cultivation in a Malo village, Gaytsa, south-western Ethiopia. In 24 free-threshing wheat fields and 11 emmer wheat fields, 129 and 88 spikes (one spike per plant), respectively, of darnel were randomly sampled. At the market in Gaytsa, 11 free-threshing wheat grain samples and eight emmer wheat grain samples of 150–200 g were collected. For each grain sample, the number of wheat grains and awned and awnless grains of darnel were recorded. The relative percentage of the awned form in free-threshing wheat fields was 8.53% and that in emmer wheat fields was 70.45%. The relative percentage of awned grains in free-threshing wheat grains from the market collection was 3.55% and that in emmer wheat grain lots was 75.20%. The morphology of awned darnel grains resembles emmer wheat grains and awnless darnel grains resemble free-threshing wheat grains. Thus, grain mimicry controls the close association of the two forms of darnel with the wheat species. The lack of an awn itself functions for darnel grain as a dispersal mechanism in free-threshing wheat cultivation systems compared with other wild grass species.     

A computer vision system for oocyte counting using images captured by smartphone

This work proposes a computer vision procedure for counting Twospot astyanax (Astyanax bimaculatus) oocytes in Petri dishes using images captured by smartphone. First, the proposed procedure uses simple linear iterative clustering (SLIC) to divide the images into groups of pixels (superpixels). Then, based on their color and space characteristics, the images are classified into light background, dark background, dirt, or oocyte by a machine learning algorithm. Five different types of machine learning algorithms were tested: support vector machines (SVM), decision trees using the algorithm J48 and random forest, k-nearest neighbors (k-NN), and Naive Bayes. To train the algorithms, 8.578 superpixels were classified by an expert into oocyte (n = 354), dirtiness (n = 651), dark background (n = 3.622), and light background (n = 3.951). Of the five learning algorithms, SVM obtained the best result with 97% correct oocyte recognition. Given the wide availability of smartphones, we therefore conclude that the presented procedure can be a valuable tool in future experiments and studies on fertilization and hatching success in Twospot astyanax.     

Monitoring shrimp growth with control charts in aquaculture

This work proposes a method for the statistical monitoring of the weekly weight of shrimp in a fish farm. The design of control charts for shrimp growth presents several challenges, the main ones being the presence of trend and autocorrelation. Several control charts are proposed, the most efficient being a chart based on the residuals of a second order autoregression whose parameters vary with the week. A control chart with less computational complexity is also provided. It is simply based on growth rates and works well at detecting negative weight changes. Real data from a large shrimp farm has been used for both the design and the evaluation.