Open-design Recirculating Systems for Zebrafish Culture

The zebrafish is an established vertebrate-animal model in biomedical research. Currently, their mass culture is mainly done using systems provided by commercial suppliers. Commercial systems are compact, recirculating, and use auto-cleaning tanks. These features minimize space use, labour cost, and water wastage; thus, facilitating maintenance of a large number of zebrafish using minimal resources. However, the often considered costs associated with these systems often impose a barrier to current and prospective researchers, especially those with limited funds or working in labs with no access to institutional centralized zebrafish culture facilities. In contrast to commercial systems, custom-made zebrafish maintenance systems are also described in the literature. To distinguish custom-made system from commercial systems, we termed them as “open-design” systems. Open-design systems are cost-effective, modular, and frequently being improved by zebrafish researchers. However, for further development and to present them as a viable option for zebrafish researchers around the world, a review of their current status and technical understanding is required. Here, we compile the disparate data on the purpose and technological development of the open-design systems. We believe this review will be a valuable resource for all zebrafish users and help streamline the open-design technology for zebrafish culture.     

Experimental investigation on the transport of different fish species in a jet fish pump

A jet fish pump with a throat of ø60 mm was designed to study its performance in the transport of different fish species and the physiological changes in fish thereafter. Experiments were conducted to investigate the fish transport rate and energy required to transport each ton of fish when transporting Carassius auratus, commonly known as the Chinese goldfish, Megalobrama amblycephala, or Wuchang bream, and Ctenopharyngodon idella, the grass carp. Fish were examined for external injuries as well as for several important enzymes and hormones which are indicators of tissue injury and stress. The results showed that the transport rate for all three species of fish rose dramatically with an increase in the primary stream rate. In this experiment, the transport rates of C. auratus, M. amblycephala and C. idella reached 2357 ± 37.2 kg ∙ h⁻¹, 2888 ± 41.6 kg ∙ h⁻¹, and 2060 ± 40.2 kg ∙ h⁻¹, respectively. However, both injury rate and energy required to transport each ton of fish increased no matter whether the primary stream rate was too low or too high. Considering both transport rate and injury rate, the mean primary stream rate of 80 m³ ∙ h⁻¹ was determined to be the optimal operating condition in this experiment. Fish were stressed and most likely some of their organs were damaged. However, most physiological indexes almost fully recovered after several hours.     

高蛋白料精等量替代鱼粉饲喂肥育猪对比试验

应用高蛋白料精等量替代鱼粉饲喂肥育猪 ,其结果在 42d试验期内高蛋白料精组头均增重 19.0 6kg ,比鱼粉组多增重 2 .12kg ,增重率提高 12 .5 2 %,头均多增收益 2 1.2 1元 ,差异显著 (P <0 .0 5 )。     

A computer vision system for oocyte counting using images captured by smartphone

This work proposes a computer vision procedure for counting Twospot astyanax (Astyanax bimaculatus) oocytes in Petri dishes using images captured by smartphone. First, the proposed procedure uses simple linear iterative clustering (SLIC) to divide the images into groups of pixels (superpixels). Then, based on their color and space characteristics, the images are classified into light background, dark background, dirt, or oocyte by a machine learning algorithm. Five different types of machine learning algorithms were tested: support vector machines (SVM), decision trees using the algorithm J48 and random forest, k-nearest neighbors (k-NN), and Naive Bayes. To train the algorithms, 8.578 superpixels were classified by an expert into oocyte (n = 354), dirtiness (n = 651), dark background (n = 3.622), and light background (n = 3.951). Of the five learning algorithms, SVM obtained the best result with 97% correct oocyte recognition. Given the wide availability of smartphones, we therefore conclude that the presented procedure can be a valuable tool in future experiments and studies on fertilization and hatching success in Twospot astyanax.     

Monitoring shrimp growth with control charts in aquaculture

This work proposes a method for the statistical monitoring of the weekly weight of shrimp in a fish farm. The design of control charts for shrimp growth presents several challenges, the main ones being the presence of trend and autocorrelation. Several control charts are proposed, the most efficient being a chart based on the residuals of a second order autoregression whose parameters vary with the week. A control chart with less computational complexity is also provided. It is simply based on growth rates and works well at detecting negative weight changes. Real data from a large shrimp farm has been used for both the design and the evaluation.     

The role of life-history and location of barriers to migration in the spatial distribution and conservation of fish assemblages in a coastal river system

Water resource development in coastal river catchments contributes to poor fish assemblage health due to the effects of barriers to migration and altered flow regimes. Impacts of migration barriers on fish assemblages depend primarily on the location of each barrier within the river network and migration needs of regional fish fauna. This study examined how temporal and spatial patterns in the distribution and composition of fish assemblages was associated with varying estuarine connectivity and migration barriers in higher altitude reaches in the eastern Hunter River catchment, temperate Australia. Species richness and abundances of diadromous species were expected to be greater in a tributary catchment with unrestricted connectivity to the Hunter River estuary when compared to a neighbouring tributary catchment with restricted connectivity. Six diadromous species were sampled only, or in greater abundances, in the unrestricted tributary when compared to the restricted tributary. As a consequence, assemblage composition in the restricted tributary was dominated by non-diadromous species. Greater abundances of the amphidromous Cox’s gudgeon (Gobiomorphus coxii) were sampled in the unrestricted tributary following their estuarine-freshwater upstream juvenile migration period when compared to the restricted tributary. Differences in the accumulations of migratory species immediately downstream of upland barriers between the two levels of estuary connectivity indicate that migration barriers in lowland reaches have significant effects throughout the entire catchment. Results of this study indicate that the location of each barrier to migration within river networks has varying consequences for catchment-scale connectivity loss and assessing the impacts of multiple barriers. Determining the effects and most appropriate management of migration barriers requires that all obstructions within a river network are recognised, as multiple barriers can have cumulative and interacting consequences for freshwater fish fauna, especially diadromous species.     

不同水肥模式的水稻叶面积修正系数试验研究

叶面积修正系数直接决定着长宽修正系数法测量叶面积的精确程度.为探讨水肥模式对水稻叶面积修正系数的影响,基于水稻实测叶面积及叶片长、宽数据计算叶面积修正系数,并分析其变化规律.结果表明,各处理生育前期水稻叶面积修正系数接近或超过经验值0.75,中期较小,抽穗开花期略有上升并稳定至0.7左右.常规灌溉处理上层叶片叶面积修正系数较控制灌溉大,叶片更加细长.不同肥料处理中,控释肥处理叶面积修正系数普遍偏低;常规肥及实地肥处理在生育前期可以采用经验值进行叶面积计算;抽穗开花及以后各生育期,各处理均可采用相同的叶面积修正系数;生育中期各处理叶面积修正系数较低.     

Spatial integration of freshwater fish markets in the Northern Baltic Sea area

Freshwater fish species and Baltic salmon (Salmo salar) are important to small-scale fisheries in Finland and Sweden. The formerly local markets for these species have expanded as trade has been opened up to international competition. In this study we use cointegration analysis to test the spatial integration of freshwater fish markets in Finland and between Finland and Sweden. The analysed fish species are salmon, perch (Perca fluviatilis), pikeperch (Sander lucioperca), European whitefish (Goregonus lavaretus) and pike (Exos lucius), and the data covers ex-vessel prices from 1993 or 1995 to 2004. We found that the regional prices in Finland were cointegrated. This indicates that the prices are determined on a single market in Finland. Moreover, the study suggests that Finnish and Swedish markets in Baltic salmon, whitefish, pikeperch and perch were partially integrated, while integration of pike markets could not be found. The political implication is that an essential part of the local small-scale fisheries’ operational environment is determined outside the national borders.