The microbial diversity and structure in peatland forest in Indonesia

The microbial community structure and function under forest in tropical peatlands are poorly understood. In this study, we investigated the microbial community structure and diversity in natural peat swamp forest soil, disturbed peat soil and mineral soil in Central Kalimantan, Indonesia, using 454 pyrosequencing. The results showed that the natural peat soil had the greatest fungal species richness (Chao1), which was significantly (p < .05) larger than that in the other two soils. Community structure of both fungi and bacteria in natural peat soil differed significantly from that in the disturbed peat soil (p = .039 and p = .045, respectively). Ascomycota (40.5%) was the most abundant phylum across the three soils followed by Basidiomycota (18.8%), Zygomycota (<0.1%) and Glomeromycota (<0.1%). The linear discriminant analysis with effect size (LEfSe) showed that Ascomycota (p < .05) and genus Gliocephalotrichum (p < .05) dominated in natural peat soil. Functionally, pathotrophs were more abundant in disturbed peat soil (p < .05). Proteobacteria (43.8%) were the most abundant phylum followed by Acidobacteria (32.6%), Actinobacteria (9.8%), Planctomycetes (1.7%). Methylocystis, Telmatospirillum, Syntrophobacter, Sorangium and Opitutus were the more abundant genera in disturbed peat soil, whereas Nevskia and Schlesneria were more abundant in mineral soil and natural peat soil, respectively. The natural peat forest soil supported a more diverse microbiology; however, the land use of such a soil can change its microbial community structure. The results provide evidence that the disturbance of tropical peat land could lead to the introduction and spread of a large number of fungal diseases     

A leakiness index for assessing landscape function using remote sensing

The cover, number, size, shape, spatial arrangement and orientation of vegetation patches are attributes that have been used to indicate how well landscapes function to retain, not ‘leak’, vital system resources such as rainwater and soil. We derived and tested a directional leakiness index (DLI) for this resource retention function. We used simulated landscape maps where resource flows over map surfaces were directional and where landscape patch attributes were known. Although DLI was most strongly related to patch cover, it also logically related to patch number, size, shape, arrangement and orientation. If the direction of resource flow is multi-directional, a variant of DLI, the multi-directional leakiness index (MDLI) can be used. The utility of DLI and MDLI was demonstrated by applying these indices to three Australian savanna landscapes differing in their remotely sensed vegetation patch attributes. These leakiness indices clearly positioned these three landscapes along a function-dysfunction continuum, where dysfunctional landscapes are leaky (poorly retain resources). This revised version was published online in July 2006 with corrections to the Cover Date.     

我国热区疫霉种的分布、疫病及其防治研究进展

综述了我国热带地区疫霉种类及其引起的植物病害,并总结了疫病的防治措施,最后对疫病防治的新策略进行了展望。     

热带农业科技国际合作项目评价体系初探

从国际科技合作项目的特点出发,探讨提出热带农业科技国际合作项目评价体系的雏形,并对评价体系的项目前评价、项目中评价及项目后评价3个阶段的评价指标加以充实,为热带农业科技国际合作项目的科学、规范管理提供参考依据。     

Carbon stocks and carbon fluxes from a 10‐year prescribed burning chronosequence on a UK blanket peat

Prescribed burning is a common land management technique in many areas of the UK uplands. However, concern has been expressed at the impact of this management practice on carbon stocks and fluxes found in the carbon‐rich peat soils that underlie many of these areas. This study measured both carbon stocks and carbon fluxes from a chronosequence of prescribed burn sites in northern England. A range of carbon parameters were measured including above ground biomass and carbon stocks; net ecosystem exchange (NEE), net ecosystem respiration (R_eco) and photosynthesis (P_g) from closed chamber methods; and particulate organic carbon (POC). Analysis of the CO₂ data showed that burning was a significant factor in measured CO₂ readings but that other factors such as month of sampling explained a greater proportion of the variation in the data. Carbon budget results showed that whereas all the plots were net sources of carbon, the most recent burn scars were smaller sources of carbon compared with the older burn scars, suggesting that burning of Calluna‐dominated landscapes leads to an ‘avoided loss’ of carbon. However, this management intervention did not lead to a transition to a carbon sink and that for carbon purposes, active peat‐forming conditions are desirable.     

Influence of biomineralization on the physico-mechanical profile of a tropical soil affected by erosive processes

Most of the soils of tropical countries are affected by erosion processes. As a result, much attention has been dedicated to the use of microorganisms to improve the geotechnical properties and stability of soils in the context of “bioengineering”. This work was carried out to analyze the effects of the use of a CaCO₃ precipitating nutrient on native microbiota with the aim of mitigating the erosion processes in a tropical soil profile. We observed that the use of nutrient B4 enabled native bacteria present in the soil to precipitate calcium carbonate, resulting in improvements in the physical, chemical, mineralogical and mechanical properties of the soil, which allowed the mitigation of the erosion processes that characterize the soil profile studied.     

Soil aggregate formation and stability induced by starch and cellulose

Soil aggregate (SA) can be formed and stabilized when soil organic matter (SOM) is decomposed in the soil. However, the relationships between the SA dynamics and SOM with different decomposition rates have not been clarified. Therefore, this study examined the effects of the addition of polysaccharides to soil on SA formation and stability. A Japanese tropical soil was incubated for 99 d at 30 °C in a dark environment following the addition of 0.5% (w/w) starch or cellulose. The decomposition rates of the amendments, and SA formation and stability were evaluated by measuring soil respiration rates, and distribution fractions of soil aggregate sizes and mean weight diameter (MWD) of SA, respectively. The cumulative soil respirations with all treatments rapidly increased until Day 12 of the incubation. The initial slope of the cumulative soil respiration in the soil with starch was significantly higher than that in the soil with cellulose. In either soil with starch or cellulose, the fractions of macro-aggregates (>1000 μm in diameter) significantly increased, respectively, compared with control soil. However, the fractions of meso-aggregates (250–1000 μm) and nano-aggregate (<20 μm) in the soil with starch significantly decreased, while those fractions in the soil with cellulose fluctuated until Day 6. The MWDs reached the maximum on Day 6, indicating the SA formation in the soils with starch or cellulose. The increasing rate of the SA formation in the starch-amended soil was greatly higher than that in the cellulose-amended soil. After Day 6, the MWDs in the soils with either polysaccharide decreased with similar trends with no significant differences between treatments, indicating similar stability of the SA in both treatments. This study showed that the different decomposability of the organic amendments might influence the SA formation differently, but not the SA stability.     

Amelioration of a highly degraded tropical alfisol by planting I. Changes in soil physical and chemical properties 1989-91

This paper examines soil amelioration by planting 15 leguminous and graminaceous plant species, including herbaceous annuals, perennials and biennials, and woody perennials and biennials. Disturbed and undisturbed natural regrowth were planted with leguminous species, in some cases with fertilizer applied at planting (400 kg ha⁻¹ of 15:15:15 NPK). The studies were made on two highly degraded sites in southwestern Nigeria which had been subjected to intensive mechanized cropping for a period of 10 years. Changes in soil physical and chemical properties were monitored from 1989 to 1991. Acacia difficilis, Brachiaria lata and Mucuna utilis had the lowest survival rates by the following growing season. Soil fertility and compaction levels differed between sites. Planting had no effect on the latter. The decreases in compaction (i.e. macroporosity) between 0.00 and 0.10 m depth at both sites one month before and five and 17 months after planting were 43, 59 and 61 per cent, respectively were attributed to exclusion of heavy machinery from the sites. Large decreases in fertility occurred at both sites and were attributed to a combination of nutrient extraction and to leaching. Between fallow species, exchangeable Ca, pH and the cation-exchange capacity (CEC) were greater and total acids lower for herbaceous cover compared with woody perennials, and was attributed to a higher Ca demand by the latter. Highest and lowest values of Ca, CEC and pH occurred in plots where plant material was returned to the soil (i.e. by cutting or die-back) and in cropped plots, respectively. Natural regrowth was as effective or better than planted species in improving soil physical and chemical properties. Therefore the use of exotic plant species for ameliorating highly degraded alfisols is unnecessary. Amelioration of highly degraded alfisols may be best effected by allowing natural regrowth to occur while excluding all mechanized traffic from the site.     

The pelagic habitat analysis module for ecosystem‐based fisheries science and management

We have developed a set of tools that operate within an aquatic geographic information system to improve the accessibility, and usability of remote‐sensed satellite and computer‐modeled oceanographic data for marine science and ecosystem‐based management. The tools form the Pelagic Habitat Analysis Module (PHAM), which can be applied as a modeling platform, an investigative aid in scientific research, or utilized as a decision support system for marine ecological management. Applications include fisheries, marine biology, physical and biological oceanography, and marine spatial management. The GIS provides a home for diverse data types and automated tools for downloading remote sensed and global circulation model data. Within the GIS environment, PHAM provides a framework for seamless interactive four‐dimensional visualization, for matching between disparate data types, for flexible statistic or mechanistic model development, and for dynamic application of user developed models for habitat, density, and probability predictions. Here we describe PHAM in the context of ecosystem‐based fisheries management, and present results from case study projects which guided development. In the first, an analysis of the purse seine fishery for tropical tuna in the eastern Pacific Ocean revealed oceanographic drivers of the catch distribution and the influence of climate‐driven circulation patterns on the location of fishing grounds. To support management of the Common Thresher Shark (Alopias vulpinus) in the California Current Ecosystem, a simple empirical habitat utilization model was developed and used to dynamically predict the seasonal range expansion of common thresher shark based on oceanographic conditions.     

Sex change in coral reef fish

Gonadal differentiation can take many forms in fish, ranging from gonochorism, where individuals directly develop as male or female and finally possess only testis or ovaries at sexual maturation, to hermaphroditism where the same individuals can produce mature male and female gametes at some time in their lives. Hermaphrodite fish are, thus, an excellent model for studying the plasticity of sex determination and differentiation in vertebrates. We have shown that sex steroids play a principal role in sex differentiation and sex change in fish. Our laboratory implements several fish models that undergo sex change from female to male or male to female or in both directions. In this review, we will briefly discuss recent advances in our understanding of the mechanism of sex change in coral reef fish.