Changes in epidemiological patterns of sea lice infestation on farmed Atlantic salmon, Salmo salar L., in Scotland between 1996 and 2006

Analyses of a unique database containing sea lice records over an 11 year period provide evidence of changing infestation patterns in Scotland. The data, collected from more than 50 commercial Atlantic salmon farms, indicate that both species of sea lice commonly found in Scotland, Lepeophtheirus salmonis and Caligus elongatus, have declined on farms over the past decade. Reductions for both species have been particularly marked since 2001 when more effective veterinary medicines became available. Treatment data were also available in the database and these show a growing trend towards the use of the in-feed medication emamectin benzoate (Slice), particularly in the first year of the salmon production cycle. However, this trend towards single product use has not been sustained in 2006, the latest year for which data are available. There is some evidence of region to region variation within Scotland with the Western Isles experiencing higher levels of infestation. However, compared to the levels observed between 1996 and 2000, all regions have benefited from reduced lice infestation, with the overall pattern showing a particular reduction in the second and third quarters of the second year of production.     

Soil S availability in upland pastures of NE Scotland: relationship of extractable soil S and soil respiration to soil and site characteristics

Abstract. The mean extractable sulphur (S) concentration in 315 upland topsoil samples collected in 1988/89 from beneath pasture in NE Scotland was 13 μg S g⁻¹ (range 2–77 μg S g⁻¹). More than two thirds of the samples had S concentrations less than that acceptable for productive soils. Continued decreases in atmospheric S inputs may have increased this proportion subsequently. The analysis of herbage S also indicated that two-thirds of the samples were below 0.2% S. A 'respirometric index', namely CO₂ produced during cellulose decomposition without added S as a percentage of that produced with added S, was significantly less than 100% in a quarter of the soils. Results of three different extraction procedures suggested that sulphate in the soils was present mainly as free plus adsorbed rather than precipitated forms. Soil extraction identified a significant non-sulphate S fraction, presumably organic S. The variability in extractable S stemmed from a combination of geographical, depositional and local site and soil factors. Extractable S was significantly correlated with soil organic matter content and inversely with soil pH and together these factors explained 37% of the variability. While significant differences in mean concentrations between geographical area, soil association and drainage status were evident, no trends could be observed between the major soil subgroups or with altitude.     

Long-term changes in the sea-age at maturity and seasonal time of return of salmon, Salmo salar L., to Scottish rivers

Abstract Using catch data, changes in salmon, Salmo salar L., sea-age and seasonal return time were compared between several Scottish east coast rivers over the last 150–200 years. Parallel long-term trends were found, suggesting common influences affecting salmon at sea. Long-term associations with marine environmental factors were investigated by literature review and comparisons with an index of Icelandic sea-ice abundance. Apparent associations were shown to exist since about 1900, although the cause was not demonstrated. However, over a longer timescale, the same associations were not apparent. Unique gradual marine changes since 1900 may have resulted in perceptible associations with salmon data which may otherwise be imperceptible when short-term marine environmental variability is greater than long-term variability. Marine factors must affect salmon, but the complexity of the marine environment and controls on age at maturity and time of return mean that a retrospective analysis cannot be expected to identify the causal factors.     

Changes in the carbon concentrations and other soil properties of some Scottish agricultural soils: Evidence from a resampling campaign

The change in soil carbon (C) concentration, soil pH and major nutrients for approximately 1,000 topsoil sampled from on-farm experimental sites over a thirty-year period from 1950 to 1980 in north-east Scotland are summarized. This period coincided with increased agricultural intensification, which included regular liming and fertilizer additions. During 2017, 37 of these sites were resampled and reanlaysed. While pH and extractable phosphorus (P) and potassium (K) increased over this period, there was no detectable change in the percentage loss on ignition. Composite soil samples were taken by auger from a depth of 0–15 cm and compared with the corresponding archived samples collected at the initiation of each experiment. Analysis of these resampled soils indicated no significant change in soil carbon (C), although soil pH, extractable magnesium (Mg) and K and Nitrogen (N) concentrations were significantly greater (p < .001) but extractable soil P concentration was significantly less (p = .015) compared with the original samples. Even though measuring C concentration alone is a poor indicator of overall changes in soil C stocks, it does provide a relative quick “early warning” of C losses that would justify a more comprehensive measure of stocks.     

An assessment of salmon farms and wild salmonids as sources of Lepeophtheirus salmonis (Krøyer) copepodids in the water column in Loch Torridon, Scotland

Wild salmonids and farmed salmon can both be sources of Lepeophtheirus salmonis (Krøyer, 1838) larvae . Farmed salmon smolts free of L. salmonis infections are stocked in sea cages and may subsequently contract L. salmonis infections, probably from wild fish. The contribution of gravid L. salmonis at Atlantic salmon, Salmo salar L., farms to populations of L. salmonis larvae in the water column has in the past been based on estimated parameters, such as louse fecundity. This present study augments these calculations by combining empirical data on densities of infective L. salmonis copepodids in the field with estimates of the number of gravid L. salmonis on farmed and wild salmonids in Loch Torridon. Data collected between 2002 and 2007 show a significant correlation between mean densities of L. salmonis copepodids recovered in the water column and the numbers of gravid L. salmonis at the local salmon farms. Generally, the farms with greatest numbers of salmon were observed to have stronger correlations with densities of copepodids in the water than the farms with fewer fish. The study suggests that louse management approaches, e.g. treatment trigger levels, need to take account of individual farm biomass, or numbers of fish. This study highlights the importance of control of L. salmonis on salmon farms for the co-existence of both wild salmonid populations and the aquaculture industry.     

Geographical distribution of salmonid alphavirus subtypes in marine farmed Atlantic salmon, Salmo salar L., in Scotland and Ireland

Sequence data from salmonid alphavirus (SAV) strains obtained from farmed marine Atlantic salmon, Salmo salar L. , over a 20-year period between 1991 and 2011 was reviewed to examine the geographical distribution of the genetically defined SAV subtypes in twelve regions across Ireland and Scotland. Of 160 different Atlantic salmon SAV strains examined, 62 belonged to subtype 1, 28 to subtype 2, 34 to subtype 4, 35 to subtype 5 and 1 to subtype 6. SAV subtypes 1, 4 and 6 were found in Ireland, while subtypes 1, 2, 4 and 5 were found in Scotland. In the majority of regions, there was a clear clustering of subtypes, with SAV subtype 1 being the dominant subtype in Ireland overall, as well as in Argyll and Bute in Scotland. SAV subtype 2 predominated in the Shetland and Orkney Islands. The emergence in Atlantic salmon of subtype 2 strains typically associated with sleeping disease in rainbow trout in Argyll and Bute, strongly suggesting transmission of infection between these species, was noted for the first time. SAV subtype 4 was the most common subtype found in the southern Western Isles, while SAV subtype 5 predominated in the northern Western Isles and north-west mainland Scotland. No single strain was dominant on sites in the western Highlands, with a number of sites in this region in particular having more than one subtype detected in different submissions. The significance of these results in relation to aspects of the epidemiology of infection, including transmission, biosecurity and wildlife reservoirs are discussed and knowledge gaps identified.     

Exploring for senescence signals in native scots pine (Pinus sylvestris L.) in the Scottish Highlands

The main aim of this project was to explore whether the pine trees in Glen Affric (GAF), one of the more extensive pine woodlands in the northern Scottish Highlands, are, on average, reaching a senescent stage which could ultimately be detrimental to the sustainability of the pine woodland in this region under present management conditions. This aim was realized by (1) comparing the mean stand age of the GAF trees to other pine woodlands around Scotland, (2) exploring whether there was a significant pre-death trend in ring-width series from naturally dead trees and (3) assessing whether a notable change in response of tree growth to climate was noted as a function of age which could indicate that trees were entering a state of senescence.     

Lightning damage to potatoes

Summary Two distinct round patches were observed in a potato field where the haulm showed symptoms like those of blackleg. The remainder of the field was in vigorous growth. Affected stems had long cracks andErwinia carotovora var.atroseptica was isolated from some. This had probably developed subsequently on damaged tissue and no rotting was apparent below soil level. Most of the tubers were decayed but noErwinia and only green pseudomonads were detected. Local meteorological records showed that thunderstorms occurred on only one day (1 August) in the six weeks before observation of the field symptoms. It was concluded from all evidence that the condition described was caused by a lightning strike on that day.     

The carbon content of soil and its geographical distribution in Great Britain

Abstract. England and Wales have 155 314 1 × 1 km squares, of which 140049 have more than 50% soil cover. The total soil organic carbon content, based on the dominant soil series and dominant land cover type, is estimated to be 2773 × 10⁶ t C. Scotland has 84929 1 × 1 km squares, of which 82 420 have a nominated dominant soil series. The total soil organic carbon content is estimated to be 19011 × 10⁶ t C, 6.85 times the total organic carbon content of the soil of England and Wales. The total organic carbon content of the soil of Great Britain is estimated to be 21 784 × 10⁶ t C, of which 87% is in Scottish soils and 75% is in Scottish peats. A map of the mean soil organic carbon content of 10 × 10 km squares of the National Grid using classes of equal range illustrates the narrow range of organic carbon contents of the soils of England and Wales and the dominance of organic carbon in Scottish soils. A map using the same data, but with classes of unequal ranges increasing in size with increasing carbon content, is better for showing detailed differences within England and Wales.     

Priorities towards national-level soil protection: a survey of soil stakeholders in Scotland

Abstract. Soil protection policies are being developed in many countries, particularly those in the European Union where pan-national regulatory frameworks now exist. We report an analysis of a survey of the views of a wide range of stakeholders in the soil resource of Scotland, including representatives of rural and urban land users, public bodies and authorities, non-governmental environmental organizations, and soil scientists based in Scotland. The four soil issues considered of particular importance were soil pollution, soil erosion, loss of soils to development, and loss of biodiversity. Comments were strongly polarized, either strongly promoting issues or indicating lack of awareness, on a set of topics: the loss of valued soils, loss of archaeological sites, and changes in terrestrial carbon store. It is argued that an integrated approach is required to implement any future soil protection strategies, and that special attention should be paid to monitoring long-term changes and to provision of soil survey data from urban areas.