Myxomycetes in soil

The myxomycetes are a group of protists that form a monophyletic taxon in the phylum Amoebozoa. Evidence of their evolutionary success is the fact that they account for more species (ca. 900 are currently recognized) than the combined total for the rest of the Amoebozoa. Moreover, myxomycetes are present in every terrestrial environment investigated to date and also, as amoebae or flagellated cells, in aquatic environments where they cannot form fruiting bodies. Even if culture-based methods tend to underestimate their occurrence in soil, myxomycetes probably account for ∼50% of soil amoebae. The emergence of molecular-based methods has revolutionized our concepts of biodiversity, but myxomycetes are conspicuously absent from all environmental surveys. Herein we show that this is due to their highly diverging SSU rRNA gene sequences, which contain numerous Group I introns.Further proof comes from a recent study that used a massive sequencing approach without primer bias to amplify RNAs. The results obtained show that the mycetozoans (myxomycetes along with dictyostelids and protostelids) are indeed a dominant group of soil protozoans.     

Soil water availability strongly alters the community composition of soil protists

Drought and heavy rainfall are contrasting conditions expected to result from increasingly extreme weather during climate change; and both scenarios will strongly affect the functioning of soil systems. However, little is known about the specific responses of soil microorganisms, whose functioning is intimately tied to the magnitude of the water-filled pore space in soil. Soil heterotrophic protists, being important aquatic soil organisms are considered as key-regulators of microbial nutrient turnover. We investigated the responses of distinct protist taxa to changes in soil water availability (SWA) using a modified enumeration technique that enabled quantification of protist taxa up to genus level. Our study revealed a non-linear shift of protist abundance with decreasing SWA and this became apparent at a maximum water-filled pore size of ≤40 μm. Generally, taxa containing large specimen were more severely affected by drought, but responses to either drought or rewetting of soils were not uniform among taxa. Changes in water availability may thus affect the functioning of key taxa and soil ecosystems long before aboveground “drought” effects become apparent.