First molecular detection of canine herpesvirus 1 (CaHV-1) in the Eastern Brazilian Amazon

BackgroundCanine herpesvirus type 1 (CaHV-1) infects dogs and is associated with neonatal deaths and reproductive, ocular, neurological, and respiratory problems. In Brazil, reports of CaHV-1 have been restricted to the southeast and south regions, particularly in municipalities in the state of Rio Grande do Sul.ObjectivesTo assess the presence and variability of CaHV-1 in canine populations in the state of Pará, North Brazil.MethodsBiological samples from 159 dogs from 4 municipalities in the State of Pará were evaluated using polymerase chain reaction and phylogenetic analyses, with the target being the viral enzyme, thymidine kinase.ResultsCaHV-1 was detected in 13 dogs (8.2%), with 2 animals being from the municipality of Santa Bárbara do Pará, 8 from Algodoal Island, 2 from Salinópolis, and one from Capanema. The study sequences revealed 100% identity among themselves and 64% to 100% identity with the other nucleotide sequences from Australia, Brazil, United Kingdom, and United States, including 100% identity with the 2002 isolate from Australia. The 1996 isolate from France was grouped in a branch that was different from the sequence of this study.ConclusionsThis study presents the first molecular detection of CaHV-1 in dogs from the Amazon region in northern Brazil. The nucleotide identity between the strains and cytosine insertion in the sequences isolated in this study suggests at least 2 strains of CaHV-1 circulating in Brazil (Pará and BTU-1).     

Short-term changes in nitrogen availability, gas fluxes (CO2, NO, N2O) and microbial biomass after tillage during pasture re-establishment in Rondônia, Brazil

Anthropogenic conversion of primary forest to pasture for cattle production is still frequent in the Amazon Basin. Practices adopted by ranchers to restore productivity to degraded pasture have the potential to alter soil N availability and N gas losses from soils. We examined short-term (35 days) effects of tillage prior to pasture re-establishment on soil N availability, CO₂, NO and N₂O fluxes and microbial biomass C and N under degraded pasture at Nova Vida ranch, Rondônia, Brazilian Amazon. We collected soil samples and measured gas fluxes in tilled and control (non tilled pasture) 12 times at equally spaced intervals during October 2001 to quantify the effect of tillage. Maximum soil NH₄⁺ and NO₃⁻ pools were 13.2 and 6.3 kg N ha⁻¹ respectively after tillage compared to 0.24 and 6.3 kg N ha⁻¹ in the control. Carbon dioxide flux ranged from 118 to 181 mg C–CO₂ m² h⁻¹ in the control (non-tilled) and from 110 to 235 mg C–CO₂ m² h⁻¹ when tilled. Microbial biomass C varied from 365 to 461 μg g⁻¹ in the control and from 248 to 535 μg g⁻¹ when tilled. The values for N₂O fluxes ranged from 1.22 to 96.9 μg N m⁻² h⁻¹ in the tilled plots with a maximum 3 days after the second tilling. Variability in NO flux in the control and when tilled was consistent with previous measures of NO emissions from pasture at Nova Vida. When tilled, the NO/N₂O ratio remained <1 after the first tilling suggesting that denitrification dominated N cycling. The effects of tilling on microbial parameters were less clear, except for a decrease in qCO₂ and an increase in microbial biomass C/N immediately after tilling. Our results suggest that restoration of degraded pastures with tillage will lead to less C matter, at least initially. Further long-term research is needed.     

Explaining variation in Brazil nut fruit production

Brazil nut is widely recognized as the cornerstone of the Amazonian extractive economy. Tight linkages between Brazil nut production, regional income, and intact mature forests have thrust this species into focus as a key component of Amazonian conservation and income generation strategies. Nonetheless, a comprehensive synthesis of factors explaining Brazil nut fruit production variation is lacking. We aimed to address this knowledge gap, asking: (1) What are the rates and annual variation of Bertholletia excelsa fruit production at individual and population levels? (2) What factors explain B. excelsa production variation, focusing on spatial and temporal variables, diameter at breast height (dbh), crown attributes, liana loads, and soil attributes? and (3) Does liana cutting affect fruit production?     

Growth and nutrient accumulation of Brazil nut trees (Bertholletia excelsa) in agroforestry at different fertilizer levels

The Brazil nut tree(Bertholletia excelsa) is a frequent component of agroforestry systems in the Amazon because of its adaptation to nutrient-poor upland soils and multiple uses.We investigated the aboveground biomass production(kg dry weight),nutrient uptake and requirements(N,P,Ca,Mg,K) of Brazil nut trees of different sizes grown under agroforestry conditions and fertilized at different levels.Eight of 70 experimental trees with different size were harvested and stem,branches and leaves were separated.Nutrient contents were determined for three trees of varying size.Average tree growth was fast,but variability was high,suggesting considerable potential for the improvement of this economically important species.The trees responded to increased levels of fertilizer and lime with significantly increased foliar nutrient contents and growth,probably because of the improved availability of Mg and Ca for which the species seems to have a relatively high demand.In contrast to Brazil nut trees grown in forest or dense plantations,the agroforestry trees invested a substantial part of their biomass and nutrients in large branches and developed spreading crowns.To improve stem form,reduce competition with associated crops for light and recycle nutrients,regular pruning of lower branches or planting arrangements that favor self-pruning are recommended.These measures would also increase the recycling of Ca and Mg,large quantities of which are contained in the branches.     

Fragmentation patterns and systematic transitions of the forested landscape in the upper Amazon region,Ecuador 1990–2008

The analysis of the systematic transitions in the forested landscape and the study of the forest fragmentation patterns allow us to deepen our understanding of the changes in the vegetation ground cover. The importance of knowing the intricate patterns of the land usage of the upper basin of the Amazon region is widely recognized. This zone is one of the most diverse biological areas in the world, is home to large areas of mature tropical cloud forest and demonstrates high probabilities of stable climatic conditions in light of global warming. The research quan- tiffed systematic transitions through the ＂loss＂ and ＂gain＂ of the different categories of landscape during the eighteen-year study period of the Ecuadorian Amazon Region （EAR）, the forest fragmentation patterns were also analyzed based on a set of indicators. Therefore, with respect to the entirety of the landscape, the results registered for the ground coverage in forested areas during the first period （1990-2000）, show a decrease of 6.99% and an increase of 0.68%; and during the second period （2000-2008）, show a decrease of 3.99% and an increase of 2.14%. It demonstrated that forest and agricultural areas tended to replace or be replaced by herbaceous vegetation faster than expected fortuitously. Finally, the indices of fragmentation signaled intense changes during the 1990-2000 period with a reduction during the period 2000-2008. Per- centages registered in the Largest Patch Index （LPI） were between 79.58%; 52.39% and 49.99% respectively; while the Patch Density （PD） varied between 0.04; 0.06 and 0.07. This suggests the propensity of for- est cover to remain intact. The results of this investigation suggest a tendency towards stability in Ecuador＇s Amazon landscape. Within the framework for development and management of this area, the tendency is natural regeneration. This permits a consolidation of the conservation, reforestation, forestation and agricultural forestry plans, programs and systems for the protected areas in EAR.     

Selection of Adequate Species for Degraded Areas by Oil‐Exploitation Industry as a Key Factor for Recovery Forest in the Ecuadorian Amazon

One of the requirements for the forest restoration of soils disturbed by the oil‐exploitation industry is that saplings be able to endure soil‐adverse conditions. In this study, saplings of 20 species susceptible to be used in reforestation programs were evaluated for their ability to grow on substrates derived from soils disturbed by petroleum extractions in the Ecuadorian Amazon. Seeds of each species were planted in germination trays. Once seedlings reached 5 cm in height they were transplanted to plastic bags with three treatment substrates: two derived from petroleum‐exploitation activity (soils from mud and drill cutting cells and from areas surrounding oil wells) and a control soil. Plant survival rate, stem height, and diameter were measured on a weekly basis until 14 weeks after transplantation, when we harvested the plants and also measured plant biomass and calculated the Dickson quality index for each species. Oil‐exploitation by‐product substrates impaired the performance of many saplings, with the substrate from mud and drill cutting cells being the one that most affected plant performance. Only saplings of five native species in the Amazon basin—Apeiba membranaceae, Cedrelinga cateniformis, Inga densiflora, Myroxylon balsamum, and Pouroma cecropiifolia—exhibited high or similar Dickson quality index values in all soil treatments and performed better than the rest. The use of these five species in remediation of soils disturbed by petroleum extraction in the Amazon basin could prove important because of their high potential to adapt to these disturbed sites. Copyright © 2016 John Wiley & Sons, Ltd.     

Plant nutrients in a degraded soil treated with water treatment sludge and cultivated with grasses and leguminous plants

The objective of this work was to evaluate rates for applications of water treatment sludge (WTS) as a nutrient source for grasses and leguminous plants cropped in a soil degraded by tin mining in the Amazon Region (Natural Forest of Jamari, Rondonia State, Brazil). The treatments consisted of three rates of nitrogen supplied by WTS (100, 150 and 200 mg kg⁻¹ soil), five combinations of plants, two controls (absolute control, without fertilization; and chemical control, soil+lime+chemical fertilizers). WTS modified the contents of macro and micronutrients in the degraded soil, but it was not, as used in the present study, sufficient for the rehabilitation of the degraded area.     

Determinants of yield in a non-timber forest product: Copaifera oleoresin in Amazonian extractive reserves

Developing sustainable extractive industries in otherwise intact tropical forest regions requires a sound understanding of the production potential of key resource populations. The oleoresin extracted from Copaifera trees is an economically important non-timber forest product harvested throughout the lowland Amazon basin. We studied oleoresin extraction from four species of Copaifera trees with known harvest histories within two contiguous extractive reserves in western Brazilian Amazonia. We conducted a large-scale experimental harvest of 179 previously unharvested Copaifera trees, in both seasonally flooded (várzea) and adjacent unflooded (terra firme) forests. The likelihood of trees yielding any oleoresin was principally determined by their species identity: C. multijuga was the only species to regularly yield oleoresin (70% of trees). Yield volumes varied both amongst species and forest types: C. multijuga (restricted to terra firme forest) had the highest mean yield of 505 ml, whilst C. guyanensis produced higher volumes of oleoresin in várzea (139 ml) than terra firme (15 ml) forest. Intraspecific differences were driven mainly by tree size. To assess extraction sustainability, we reharvested a sample of C. multijuga trees and compared the oleoresin production of 24 conspecific trees that had been initially harvested one year previously with that of 17 trees initially harvested three years previously. Reharvested trees produced just 35% of the oleoresin volume compared to that when originally drilled, but this response was not affected by the time interval between consecutive harvests. We demonstrate that, within a population of Copaifera, both morphological and environmental factors restrict total productivity; consideration of these factors should inform sustainable management practises. We additionally raise methodological considerations that may improve the comparability of studies.     

Spatial patterns of diversity and genetic erosion of traditional cassava (<Emphasis Type="Italic">Manihot esculenta</Emphasis> Crantz) in the Peruvian Amazon: An evaluation of socio-economic and environmental indicators

This study evaluates quantitatively the suitability of the use of site-specific socio-economic and environmental data as indicators to rapidly assess patterns of diversity and genetic erosion risk in cassava. Socio-economic data as well as farmers’ estimation of genetic erosion were collected in the study area, the Ucayali region of the Peruvian Amazon, through interviews with 285 cassava farmers in 50 communities, while diversity was assessed based on agromorphological characterization of 295 cassava accessions. Using multivariate regression analyses, 50 and 45% of the variation in respectively diversity and genetic erosion estimation could be explained by a selected set of socio-economic and environmental indicators. In both regression models four out of the total of 38 variables proved to contribute significantly (at p < 0.10 level). Additionally, the study revealed that farmers are a good direct source of information on the diversity present at community level, which can contribute to the development of methodologies to assess diversity more rapidly. The results of this study are valuable for the development of models to rapidly assess diversity dynamics in large areas.