Gene genealogies support Fusarium oxysporum f. sp. ciceris as a monophyletic group

Fusarium oxysporum f. sp. ciceris (Foc), the causal agent of fusarium wilt of chickpea, consists of two pathotypes (yellowing and wilting) and eight races (races 0, 1B/C, 1A and 2–6) of diverse geographical distribution. Six Foc isolates, one each of races 0, 1B/C, 1A, 4, 5 and 6, representing the two pathotypes and the geographical range of the pathogen, showed identical sequences in introns of the genes for translation elongation factor 1α ( EF1 α), β-tubulin, histone 3, actin and calmodulin. Eleven additional Foc isolates representative of all races, pathotypes and geographical range, and three isolates of F. oxysporum (Fo) nonpathogenic to chickpea were further analysed for sequence variation in the EF1 α gene. All isolates pathogenic to chickpeas shared an identical EF1 α gene sequence, which differed from that shared by the three Fo isolates nonpathogenic to chickpea. EF1 α gene sequences from the 17 Foc isolates and the three Fo isolates were compared with 24 EF1 α gene sequences in GenBank from isolates of 11 formae speciales of F. oxysporum by parsimony analysis. Foc isolates formed a grouping distinct from other formae speciales and nonpathogenic isolates. These results indicate that F. oxysporum f. sp. ciceris is monophyletic.     

达乌尔黄鼠线粒体Cyt b基因序列特征及其系统进化分析

在甘肃省天祝藏族自治县采集12只达乌尔黄鼠(Spermophilus dauricus),PCR产物直接测序获得Cyt b基因1140bp序列,采用Clustal X 1.84、MEGA 6.0、Dna SP 5.0等生物信息学软件进行了序列特征和系统地位分析。结果显示,达乌尔黄鼠Cyt b基因含116个多态信息位点,群体中多态位点类型有转换、颠换,Cyt b基因T,C,A,G碱基含量分别为33.7%,25.9%,27.6%,12.9%。基于Kimura双参数的遗传距离显示,属内种间大黄鼠(Spermophilus major)与新疆黄鼠(Spermophilus fulvus)间遗传距离最小(0.034),高加索黄鼠(Spermophilus musicus)与达乌尔黄鼠最大(0.172),达乌尔黄鼠群体内遗传距离为0.140,种群分化较大,基于NJ法构建的系统进化树符合传统分类标准,研究为达乌尔黄鼠Cyt b基因标记的种群遗传学应用提供了参考。     

基于投入产出方法的食用菌产业生态补偿演化博弈研究

为了解决传统食用菌产业生态补偿演化博弈模型演化稳定性差的问题,提出基于投入产出方法的食用菌产业生态补偿演化博弈模型。依据食用菌产业实际情况,界定食用菌产业生态补偿利益相关者,引入投入产出方法,以此为基础,构建食用菌产业生态补偿演化博弈模型。以模型为工具,计算模型平衡点,并演化博弈食用菌产业生态补偿情况。仿真试验结果表明:与传统演化博弈模型相比,构建的食用菌产业生态补偿演化博弈模型极大的提升了演化稳定性,表现出了良好的演化博弈性能。     

RESPONSE OF WHEAT COMPOSITE CROSS POPULATIONS TO DISEASE AND CLIMATE VARIATION OVER 13 GENERATIONS

• Agronomic performance of wheat populations comparable to modern cultivars.• Performance of populations depends on parental cultivar selection.• Agronomic advantage of populations under particular environmental stresses.• Heterogeneous populations better suited to low-input conditions.Since the F₅ (2005), three winter wheat composite cross populations (CCPs) based on germplasm specifically suitable for low-input conditions were subjected to natural selection under organic and conventional management. In the F₆, each CCP was divided into two parallel populations (12 CCPs in total) and maintained continuously until 2018. Commonly used modern cultivars with different disease susceptibilities were grown alongside to assess the agronomic performance of the CCPs. The organically managed CCPs were comparable in yield and foliar disease resistance to two continuously used reference cultivars, Achat and Capo. In contrast, under conventional management the cv. Capo outyielded the CCPs (Achat was not tested), highlighting the importance of parental cultivar choice for specific management systems. The CCPs were found to be moderately resistant to brown rust and even to the newly emerged stripe rust races prevalent in Europe since 2011. Differences between the CCPs were mainly due to parental genetic background and were significant in the first five generations, but were no longer so in the last five generations. In addition, these differences tended to vary depending on the experimental year and the environmental stresses present. In conclusion, the CCPs despite being derived from older cultivars are able to compete with more recently released reference cultivars under organic farming practices and represent a dynamic germplasm resource.     

生态位构建理论及其应用

总结了生态位构建在自然选择压的改变、非基因继承、基因具有间接的相互作用和表型的双重角色等4个方面的理论;探讨了生态位构建在进化生物学、生态学协同进化、人类基因遗传和文化过程的关系、管理科学等相关研究领域的应用情况和发展前景.     

渔船用生物柴油减排的进化博弈分析

渔船污染排放是空气污染的一个重要来源,引起国际社会的广泛关注。生物柴油作为一种清洁的可再生能源,具有显著的减排效果。研究从进化博弈论的角度探讨了渔船应用生物柴油的减排策略,分析了有限理性的渔民之间、渔民和企业之间采取不同策略群体比例的动态变化,以及进行稳定策略的条件。研究认为,政府的补贴政策、渔业部门的监督检验和碳交易的有效实施,可以改变渔民的得益矩阵,引导渔民使用替代能源进行减排。对我国捕捞渔船进行了减排成本估算,结果表明,渔船发动机掺混5%的生物柴油将导致每船每年平均增加燃油成本近3 000元。如果政府能够制定生物柴油补贴政策,并建立有效的碳交易制度,在不增加成本的前提下,渔民会逐渐倾向采用生物柴油进行渔船减排。     

公鸡斗架及其进化稳定策略

公鸡斗架是常见的一种动物争斗行为,作者通过对公鸡斗架行为的根源、方式和结局的分析,说明公鸡斗架行为是由基因控制的,是自然选择的结果,斗架的本质是繁殖斗争,目的是取得与更多异性交配的机会,留下更多的后代.公鸡斗架的节制性符合进化稳定性策略,在进化上具有重要意义.     

长江草鱼群体MHC Class ⅡB的多态性和进化分析

克隆及测序草鱼(Ctenopharyngodon idella)长江3个群体的主要组织相容性复合体(MHC)Class II B基因编码β1和β2区的第2和第3个外显子及两个外显子之间的内含子,分析了草鱼MHC的进化模式和种群遗传结构。结果显示:实验共定义了34个等位基因,每条序列包括长为130~136 bp的第2个外显子,长为218 bp的第3个外显子以及长81~371 bp的内含子。序列分析揭示,第2个外显子有106个核苷酸变异位点(78%)和40个氨基酸变异位点(88%),而第3个外显子有100个核苷酸变异位点(45%)和41个氨基酸变异位点(56%),β1变异要大于β2区。用β1和β2区序列分别构建的邻接(NJ)系统树均显示5个具有高支持率的谱系,结合序列变异特点和内含子长度,推测草鱼至少存在5个MHC Class II座位。分别计算β1的肽结合位点(PBR)、非肽结合位点及β2的非同义替换率(dN)和同义替换率(dS),PBR的dN/dS为2.03(P<0.05),非肽结合位点和β2则小于1,表明草鱼MHC受到歧化选择作用。根据等位基因在群体中的分布频率作分子方差分析(AMOVA),得出FST为0.37%,提示长江草鱼MHC没有遗传分化。     

基于变权重法的Pareto轨迹多目标进化算法

大多数现有的多目标进化算法 (MOEA- Multiobjective Evolutionary Algorithm )都是基于 Pareto机制的 ,如 NPGA (Niched Pareto Genetic Algorithm ) ,NSGA(Non- dom inated Sorting Genetic Algorithm )等。这些算法的每一个循环都要对种群中的部分或全部个体进行排序或比较 ,计算量很大。文中介绍了一种基于变权重线性加权的 Pareto轨迹法 - WSTPEA(Weighted Sum Approach and Tracing Pareto Method) ,该算法不是同时求得所有可能的非劣解 ,而是每执行一个循环步骤求得一个非劣解 ,通过权重变化次数控制算法循环的次数 ,从而使整个种群遍历 Pareto曲线 (面 )。文中给出了算法的详细描述和流程图 ,并且对两个实验测试问题进行了计算 ,最后对结果进行了分析     

城乡要素共生背景下的土地入股双层多方利益博弈主体合作机制

在城乡要素共生背景下,为了探寻土地入股多方参与主体的合作机制,从理论层面建立双层多方演化博弈模型,对地方政府、资本下乡企业、农户、集体经济组织4方参与土地入股合作的利益博弈关系进行剖析,得到各方合作的稳定策略,并基于对内蒙古固阳县马铃薯专业合作社的调查,对多方合作演化博弈模型的稳定策略选择进行验证性分析。研究发现,土地增值收益的合理分配、政府的政策奖励、土地入股合作参与主体的心理预期收益,以及对合谋行为的惩罚力度等都对土地入股合作的稳定性产生较大影响。为构建土地入股四方主体的合作机制,提出如下建议：拓展土地入股合作,提高超额收益;提高违约金,降低各方违约的概率;减少额外收益,提高各方合作的稳定性;根据入股比例确定利益分配系数,提高利益分配均衡性;提高政府奖励与农户获取的其他收入,调动各方合作积极性;提高集体经济组织所得酬劳,增强合作积极性;增大对集体经济组织合谋的惩罚,遏制合谋行为的发生。