SNP Markers Discovery in Soybean with Use of Degenerate Oligolucleotide Primed PCR

There are several strategies that can be applied in SNP discovery, as for example the locus-specific amplification of target genome regions （Primmer et al., 2002; Van et al., 2004） or simultaneous assembly of anonymous sequences which are the product of whole genome shotgun sequencing （Webber and Myers, 1997） or reduced representation shotgun sequencing （Altshuler et al., 2000）. The majority of these methods are highly cost-prohibitive, however, and there is a necessity for development of new strategies that would be more suitable for small and medium-scale laboratories.     

广西巴马小型猪1号染色体 DNA文库的构建和鉴定

研究利用玻璃针显微分离了巴马小型猪外周血淋巴细胞有丝分裂中期的1号染色体,然后将显微分离的染色体进行简并寡核苷酸引物PCR（DOP—PCR）扩增,通过PCR技术和荧光原位杂交（Florescence in situ hybridization,FISH）技术对扩增产物来源进行鉴定后,将DOP—PCR产物与pMD18-T载体连接、转化以构建1号染色体微克隆文库。结果表明：DOP—PCR扩增产物与猪的1号染色体DNA同源,并且得到了插入片段为100～600bp的巴马小型猪的1号染色体微克隆DNA文库。     

尼罗罗非鱼X和Y染色体原位杂交探针的制备

通过染色体显微切割的方法，分别从尼罗罗非鱼XX和YY个体有丝分裂中期相染色体滴片上，割取第1对染色体，随后经简并PCR扩增，分别用生物素和地高辛标记，得到X和Y染色体探针。将探针与尼罗罗非鱼XY个体的染色体进行荧光原位杂交，在第1对染色体上得到很强的杂交信号。结果表明，染色体显微切割和简并PCR技术相结合，可以有效地制备鱼类DNA探针。     

猪13/17罗伯逊易位染色体的显微分离及DOP-PCR扩增

以13／17罗伯逊易位杂合子猪[2n=37，XY或XX，rob（13：17）]为材料，制备其有丝分裂中期染色体，利用显微分离技术对13／17罗伯逊易位染色体进行分离，并将单条染色体进行简并寡核苷酸引物PCR（degenerate oligonucleotide primer-PCR．DOP-PCR）扩增，其扩增片段大小主要在0．2～2．5kb之间；以DOP-PCR扩增产物为模板，分别以猪13、17号染色体近着丝点微卫星标记S0282和SW335为扩增目的基因，对D0P-PCR扩增产物进行鉴定，结果表明DOP-PCR产物来源于13／17罗伯逊易位染色体。该方法的成功建立为进一步从分子水平上研究家猪13／17罗伯逊易位所引起的表型效应的遗传机制以及筛选猪13和17号染色体上新的分子遗传标记奠定了基础。     

Aneuploids as a key for new molecular cloning strategies: development of DNA markers by microdissection using Triticum aestivum-Aegilops markgrafii chromosome addition line B

Summary We established a chromosome specific DNA library of the Aegilops markgrafii chromosome B. Eight microdissected chromosomes B obtained from a monosomic T. aestivum-Aegilops markgrafii addition line were PCR-amplified and the DNA was cloned in Escherichia coli DH5. Clones were characterized by dot blot hybridization with total Ae. markgrafii DNA. 62% of clones represented repetitive sequences and 38% low or single copy sequences. The estimated length of excised inserts varied between less than 200 bp and more than 500 bp. The average size of inserts was 310 bp.Abbreviations bp base pairs - DOP-PCR degenerated oligonucleotide primed polymerase chain reaction