Genome-wide association study for spot blotch resistance in Afghan wheat germplasm

Spot blotch (SB), caused by Bipolaris sorokiniana, is a devastating disease of wheat globally, especially in South Asia and South America. Understanding the genetics of resistance to SB is important for developing breeding strategies to improve resistance. A panel of 301 genotypes from Afghanistan was phenotyped over two crop seasons using a mixture of virulent B. sorokiniana isolates and genotyped using DArTSeq to obtain genome-wide markers. Fifty genotypes (16.6%) showed disease scores less than the resistant control. Principal component analysis using the genotypic data clustered the genotypes into five different groups. Among models used for genome-wide association mapping, the multilocus mixed model, and fixed and random model circulating probability unification algorithms were most effective in identifying significant marker-trait associations (MTA). Twenty-five MTAs at p ≤ .001 were identified on chromosomes 1A, 1B, 1D, 2B, 2D, 3A, 3B, 4A, 5A, 5B, 6A, 7A, and 7D, indicating the quantitative nature of resistance to SB. Phenotypic variation explained by these markers ranged from 2.0% to 17.7%, and genomic regions on the chromosomes 1D, 2D, 3A, 3B, 4A, 5A, and 5B coincided with loci identified in previous studies. Three single nucleotide polymorphism (SNP) markers on chromosomes 1B (SNP 1113207) and 5A (SNPs 5411867 and 998276) were significant in both crop seasons as well as in the combined analysis across seasons. Marker 5411867 is close to Vrn-A1, shown to be associated with SB in previous studies. Furthermore, among known SB resistance genes, Sb2 on chromosome 5B was predicted to be significant in this panel.     

饲料营养与鱼类的健康

营养状态是决定鱼类抵抗疾病能力的一个重要因子.优质饲料对改善养殖鱼类的健康与提高抗病能力至关重要,这一点已被大量实验所证实.饲料中蛋白质、脂肪、碳水化合物等主要营养成分含量不足,会影响鱼类的正常生长,甚至出现缺乏症;现越来越多的研究发现某些必需营养成分(必需氨基酸、必需脂肪酸、维生素和矿物质)含量不足的饲料会导致鱼类营养不良和抗病力弱,微量营养元素与鱼类抗病力的关系研究日益得到重视.     

Effects of transition season management on soil N dynamics and system N balances in rice–wheat rotations of Nepal

In the low-input rice–wheat production systems of Nepal, the N nutrition of both crops is largely based on the supply from soil pools. Declining yield trends call for management interventions aiming at the avoidance of native soil N losses. A field study was conducted at two sites in the lowland and the upper mid-hills of Nepal with contrasting temperature regimes and durations of the dry-to-wet season transition period between the harvest of wheat and the transplanting of lowland rice. Technical options included the return of the straw of the preceding wheat crop, the cultivation of short-cycled crops during the transition season, and combinations of both. Dynamics of soil N_min, nitrate leaching, nitrous oxide emissions, and crop N uptake were studied throughout the year between 2004 and 2005 and partial N balances of the cropping systems were established. In the traditional system (bare fallow between wheat and rice) a large accumulation of soil nitrate N and its subsequent disappearance upon soil saturation occurred during the transition season. This nitrate loss was associated with nitrate leaching (6.3 and 12.8 kg ha⁻¹ at the low and high altitude sites, respectively) and peaks of nitrous oxide emissions (120 and 480 mg m⁻² h⁻¹ at the low and high altitude sites, respectively). Incorporation of wheat straw at 3 Mg ha⁻¹ and/or cultivation of a nitrate catch crop during the transition season significantly reduced the build up of soil nitrate and subsequent N losses at the low altitude site. At the high altitude site, cumulative grain yields increased from 2.35 Mg ha⁻¹ with bare fallow during the transition season to 3.44 Mg ha⁻¹ when wheat straw was incorporated. At the low altitude site, the cumulative yield significantly increased from 2.85 Mg ha⁻¹ (bare fallow) to between 3.63 and 6.63 Mg ha⁻¹, depending on the transition season option applied. Irrespective of the site and the land use option applied during the transition season, systems N balances remained largely negative, ranging from −37 to −84 kg N ha⁻¹. We conclude that despite reduced N losses and increased grain yields the proposed options need to be complemented with additional N inputs to sustain long-term productivity.     

Intake and digestion of barley straw by sheep given expelled groundnut meal with different amounts of calcium

Summary Six wether sheep were used in a 6×6 latin square experiment to study the effect of calcium intake on intake and digestibility of barley straw fedad libitum with low and high oil groundnut meal. The level of added calcium ranged from 1.6 to 3.0 g/day for the low oil and 6.4 to 10.4 g/day for the high oil diet. Each experimental period was of 21 days duration which comprised 14 days for adaption to the diet followed by a sevenday collection. The amount of added calcium had a significant effect only with the high oil groundnut meal. The digestibility of crude fibre in diets which contained this meal was significantly increased (p<0.05) when the amount of added calcium was raised from 6.4 to 8.0 g/day. The sheep showed a marked adaptation to the diets which was manifested as a highly significant increase (p<0.001) in straw intake as the trial progressed. There was a significant difference (p<0.05) between animals in intake and digestibility of some dietary constituents. This was shown particularly by one animal whose intake was substantially greater but whose digestive ability was appreciably less than the other five. The nitrogen retention by the sheep on the six diets differed considerably between the two types of groundnut meal. It was higher when the high oil meal was fed and this difference was mainly due to a smaller excretion of urea.

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Sumario Los ensayos de digestibilidad y pruebas de balance fueron llevadas a cabo en 6 ovinos castrados con el fin de estudiar el efecto del suplemento de calcio sobre la ingestión y digestibilidad dela paja dela cebada con dietas de harina de maní altas y bajas. El incremento en la digestibilidad de la fibra cruda con la harina de maní en dosis altas se atribuyó al calcio suplementado. La adaptación de los ovinos a las dietas fue notada conforme progresaba el experimento junto con una amplia variación entre los animales en ingestión y digestibilidad de algunos constituyentes de la dieta. La retención de nitrógeno fue mas alta en aquellos animales alimentados con niveles altos de harina de maní, y debido a una mas peque?a excreción de urea.

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Résumé Des essais de digestibilité et de bilan ont été effectués sur six moutons pour étudier l’influence d’un complément de calcium sur la consommation et la digestibilité de paille d’orge avec une proportion faible ou élevée de tourteau d’arachide. Une augmentation de la digestibilité de la cellulose brute de ce dernier a été attribuée à l’addition de calcium. L’adaptation des moutons aux rations a été progressive mais une grande variation de la consommation et de la digestibilité de quelques constituants alimentaires a été constatée entre les animaux. La rétention d’azote était plus élevée chez les animaux ayant re?u une proportion élevée de tourteau d’arachide, par suite d’une excrétion plus faible d’urée.

     

The effect of topical tripeptide-copper complex on healing of ischemic open wounds

OBJECTIVE: To evaluate the effects of topical glycyl-L-histidyl-L-lysine tripeptide-copper complex (TCC; Iamin 2% Gel; Procyte Corporation, Redmond, WA) on healing in ischemic open wounds. STUDY DESIGN: Experimental study. SAMPLE POPULATION: Twenty-four adult male Sprague-Dawley rats. METHODS: Rats were divided into 3 groups: topical TCC, topical TCC vehicle (hydroxypropyl-methylcellulose), and no treatment (control). Six-mm-diameter, full-thickness wounds were created within an ischemic bipedicle skin flap on the dorsum of each rat. Each day, for 13 days, wound margins were traced, and the TCC and TCC vehicle groups were treated topically. Tracings were scanned, and wound perimeter and area were calculated. On days 6, 10, and 13, selected wounds were biopsied and analyzed for tumor necrosis factor alpha (TNF-alpha) and matrix metalloproteinases (MMP) 2 and 9. RESULTS: A significant decrease in wound area was seen in the TCC group, but not the vehicle group, when compared with the control group on days 3 to 5, 6 to 9, and 11 to 13 and when TCC was compared with TCC vehicle on days 3 and 9. On day 13, initial wound area had decreased by 64.5% in the TCC group, 45.6% in the vehicle group, and 28.2% in the control group. On days 6, 10, and 13, TCC-treated wounds contained significantly lower concentrations of TNF-alpha and MMP-2 and MMP-9 than control wounds. CONCLUSION: Topical TCC resulted in accelerated wound healing in ischemic open wounds. CLINICAL RELEVANCE: Topical TCC is an effective stimulant of healing of ischemic open wounds in rats and may have an application for the treatment of chronic wounds in other species. Clinical evaluation of topical TCC is warranted.     

Jojoba seed meal proteins associated with proteolytic and protease inhibitory activities

The jojoba, Simmondsia chinensis, is a characteristic desert plant native to the Sonoran desert. The jojoba meal after oil extraction is rich in protein. The major jojoba proteins were albumins (79%) and globulins (21%), which have similar amino acid compositions and also showed a labile thrombin-inhibitory activity. SDS-PAGE showed two major proteins at 50 kDa and 25 kDa both in the albumins and in the globulins. The 25 kDa protein has trypsin- and chymotrypsin-inhibitory activities. In vitro digestibility of the globulins and albumins resembled that of casein and soybean protein concentrates and was increased after heat treatment. The increased digestibility achieved by boiling may be attributed to inactivation of the protease inhibitors and denaturation of proteins.     

Inhibition of peroxynitrite-mediated reactions by vanillin

Several neurodegenerative diseases such as Alzeimer's and Parkinson's as well as septic shock and inflammation involve formation of reactive oxygen and nitrogen species that include peroxynitrite (PON). PON can also react with endogenous antioxidants. Therefore, dietary supplementation with antioxidants may help in these diseases. An exogenous antioxidant, vanillin (4-hydroxy-3-methoxybenzaldehyde), used widely as a food flavoring agent, was evaluated for its ability to scavenge PON and inhibit PON-mediated reactions. Nitration of tyrosine by PON was assessed by high-performance liquid chromatography (HPLC). This reaction was inhibited by vanillin. The oxidation of dihydrorhodamine 123 to fluorescent rhodamine 123 was also inhibited by vanillin. The kinetics of reaction between PON and vanillin was studied by stopped-flow technique. The products of this reaction were analyzed by HPLC, and hydroxyvanillin was identified as one of the five products with absorption at 350 nm. These data demonstrate that vanillin effectively scavenges PON in cell-free systems.     

Free radical studies of ellagic acid, a natural phenolic antioxidant

Ellagic acid, a plant-derived polyphenol, inhibits gamma-radiation (hydroxyl radical) induced lipid peroxidation in rat liver microsomes in a dose- and concentration-dependent manner. Its antioxidant capacity has been estimated using the 1,1-diphenyl-2-picrylhydrazyl radical assay. To understand the actual mechanisms involved in antioxidant activity and the free radical scavenging ability,a nanosecond pulse radiolysis technique has been employed. The rate constants for the reactions of several reactive oxygen species and reactive nitrogen species such as hydroxyl, peroxyl, and nitrogen dioxide radicals have been found to be in the range of 10(6)-10(9) M(-1) s(-1). The ellagic acid radicals have been characterized by the absorption spectra and decay kinetics. Studies on the reactions of ellagic acid with the 2,2'-azinobis(3-ethylbenzothiazoline-6-sulfonate) radical and the radicals of ellagic acid with ascorbate have been used to estimate its one-electron reduction potential. Ellagic acid has also been found to be a good scavenger of peroxynitrite. Using stopped-flow reaction analyzer with absorption detection, the rate constant for this reaction has been determined to be 3.7 x 10(3) M(-1) s (-1). The electron spin resonance spectra of the oxidized ellagic acid radicals have been recorded by horseradish peroxidase and hydrogen peroxide method.     

Inhibitory effect of a bioactivity-guided fraction from Rheum undulatum on the acid production of Streptococcus mutans biofilms at sub-MIC levels

Rheum undulatum root has been used traditionally in Korea for the treatment of dental diseases. The purpose of this study was to separate a fraction from R. undulatum showing anti-acid production activity against Streptococcus mutans biofilms and identify the main components in that fraction. Methanol extract of R. undulatum root and its fractions were prepared. To select a fraction exhibiting anti-acid production activity, suspension glycolytic pH-drop assay was performed. Among the fractions tested, dichloromethane fraction exhibited the strongest activity in a dose-dependent manner. To examine the effect of the selected fraction on the anti-acid production of S. mutans biofilms, 74 h old S. mutans biofilms were used. The selected fraction reduced the initial rate of acid production of S. mutans biofilms at sub-minimum inhibitory concentration (MIC) levels. HPLC qualitative analysis of the selected fraction indicated that the presence of anthraquinone derivatives, such as aloe-emodin, emodin, chrysophanol and physcion, as main components.     

Development of the Regional Policy Process for Air Pollution in South Asia,Southern Africa and Latin America

Projections indicate that large increases in emissions may occur in developing countries during the next twenty to fifty years if current development patterns persist. This paper describes the development of co-operation regarding air pollution issues in three sub-regions of three continents. Experiences gained through activities within a programme on Regional Air Pollution in Developing Countries are used to illustrate progress. The sub-regional process in South Asia developed through a series of meetings that led to the Malé Declaration. In southern Africa a policy dialogue led to the Harare Resolution targeted towards progress in the SADC region. A policy dialogue in Buenos Aires concentrated on issues related to regional harmonisation of legal frameworks in the Mercosur region. In all regions the link between scientific information required to support decision making has been emphasised. The sub-regional policy processes are analysed in relation to availability of required scientific information and compared to the process that led to protocol development in Europe.