Lactobacillus rhamnosus GG SpaC pilin subunit binds to the carbohydrate moieties of intestinal glycoconjugates

Lactobacillus rhamnosus GG (LGG) is a well‐established probiotic strain. The beneficial properties of this strain are partially dependent on its prolonged residence in the gastrointestinal tract, and are likely influenced by its adhesion to the intestinal mucosa. The pilin SpaC subunit, located within the Spa pili structure, is the most well studied LGG adhesion factor. However, the binding epitopes of SpaC remain largely unknown. The aim of this study was to evaluate the binding properties of SpaC to the carbohydrate moieties of intestinal glycoconjugates using a recombinant SpaC protein. In a competitive enzyme‐linked immunosorbent assay, SpaC binding was markedly reduced by addition of purified mucin and the mucin oligosaccharide fraction. Histochemical staining revealed that the binding of SpaC was drastically reduced by periodic acid treatment. Moreover, in the surface plasmon resonance‐based Biacore assay, SpaC bound strongly to the carbohydrate moieties containing β‐galactoside at the non‐reducing terminus of glycolipids. We here provide the first demonstration that SpaC binds to the oligosaccharide chains of mucins, and that the carbohydrate moieties containing β‐galactoside at the non‐reducing termini of glycoconjugates play a crucial role in this binding. Our results demonstrate the importance of carbohydrates of SpaC for mucus interactions.     

Drip irrigation scheduling for tomatoes in unheated greenhouses

During the last two decades, energy-saving solar greenhouses without heating systems, about 150-800 m² (width: 5-10 m, length: 30-80 m) in size, have been widely used in the North of China for vegetable production during cold seasons. The greenhouse is also suitable for use in other countries located in the temperate or warm-temperate zones, especially in the developing countries, because it is inexpensive with a simple structure, and does not need any additional energy for heating in winter. Drip irrigation has been recognized as a sensible method of supplying water inside the greenhouses, and a simple method for drip irrigation scheduling at low cost is urgently required. Using the water-balance method, the authors studied the water consumption of tomato (Lycopersicon esculentum Mill.) and the relationship between evapotranspiration and water surface evaporation measured with 20 cm pan. Research results show that there is no significant water flux at 0.75 m depth when soil water potential is kept higher than -20 kPa at 15 cm depth, and around -20 kPa at 60 cm depth. The accumulative value of evapotranspiration is approximately equal to the accumulative value of water surface evaporation measured using 20 cm pan. Further analysis found that 20 cm pan can be used to determine the water requirement of tomato drip irrigation scheduling in this type of greenhouse.     

How to consider history in landscape ecology: patterns,processes, and pathways

Landscape Ecology - Landscape ecology early on developed the awareness that central objects of investigation are not stable over time and therefore the historical dimension must be included, or at...     

Positionality and protocol in field research: Undertaking community‐based investigations in Samoa

This article considers the experiences of a Samoan female geographer undertaking community‐based field research in her home country, and identifies some lessons for researchers working in similar circumstances. The paper suggests that ethical behaviour in research is ‘place‐specific’, and there is therefore a need to employ culturally sensitive and ‘location‐specific’ methodologies when undertaking community‐based research fieldwork. For the lead researcher, growing up in Samoa played a significant role in gaining an understanding of a set of robust and effective procedures to evaluate citizens' resilience to climatic and other environmental challenges. Fluency in everyday and more formal local languages, and awareness of local differences, each with multi‐layered connections to local communities, understanding cultural nuances and practising respect for va tapuia [sacred space or relationships] protocols, together facilitated the process of knowledge acquisition and helped to confirm the validity of the conclusions derived from the study.     

Application of Azotobacter enhances pond productivity and fish biomass in still water ponds

Two strains (derepressed-nitrogen fixing, Mac-27 and phosphate solubilizing, PS-21) of Azotobacter chroococcum were inoculated in fish culture ponds, singly and in combination with inorganic fertilizers (urea, single superphosphate–SSP). Physico-chemical parameters of pond waters, plankton production and fish biomass were studied. Inoculation of A. chroococcum (Mac-27) enhanced nitrogenase activity and rate of nitrogen fixation. A slight reduction in nitrogen fixation and nitrogenase activity was noticed when urea at 96 kg ha–1 y–1 was mixed with the biofertilizer (Mac-27). Inoculation of PS-21 enhanced phosphate solubilization, but Kjeldahl-nitrogen concentration values remained low in comparison with controls. On the other hand, inoculation of Azotobacter (either strain) enhanced the accumulation of ammonium-N, nitrite-N and nitrate-N. A significant (p < 0.05) reduction in dissolved oxygen (DO) concentration also took place when Azotobacter (both Mac-27 and PS-21) was inoculated in fish ponds. However, when used along with inorganic fertilizers, the reduction was not significant. The pH values were only slightly lowered when the phosphate-solubilizing strain (PS-21) of Azotobacter was inoculated. Inoculation of biofertilizer enhanced plankton production, net primary productivity and fish biomass. However, highest values in most of these parameters were noticed only in ponds that were treated with the higher doses of inorganic fertilizers (urea 192 kg and SSP 1500 kg ha–1 y–1). © Rapid Science Ltd. 1998     

Community structure of bacteria on different types of mineral particles in a sandy soil

Various types of mineral particles in a soil probably provide different microenvironments for microorganisms. The purpose of this study is to investigate whether different types of mineral in a soil harbor different bacterial populations. DNA was extracted from five types (quartz, feldspar, pyroxene, magnetite, iron-coated reddish brown particles) of sand-size mineral particles separated from a sandy soil, and was amplified for partial 16 S rRNA gene by polymerase chain reaction (PCR). Twenty-nine to 69 amplicons per each type of mineral were cloned and sequenced, followed by phylogenetic affiliation of the sequences. As a result, some types of bacteria were detected on all of the types of mineral including the orders Rhizobiales, Bacillales, and Acidobacteriales. In the case of Acidobacteriales, higher percentages were found on magnetite and quartz. Some taxa were restricted to specific types of mineral; the class Actinobacteria was found on pyroxene but not on quartz, and rarely on magnetite and feldspar. Bacterial diversity at the order level estimated by Chao1 value was higher in feldspar and pyroxene than the other three types of mineral. The UniFrac Significance test indicated that the differences in bacterial communitiy structures among the particles were suggestive except that between feldspar and pyroxene. These results support the idea that different communities of bacteria were associated with each of the mineral types.     

Influences of indigenous phototrophs on methane emissions from a straw-amended paddy soil

A pot experiment was conducted to investigate the influences of indigenous phototrophs on methane (CH₄) emissions from a paddy soil where rice straw was incorporated or was surface-applied. During the cultivation, half of the pots were covered with aluminum foil, except for the minimum space for rice plants, to prevent ambient light reaching the floodwater or the soil surface. Growth of oxygen-producing phototrophs was hardly observed in the unilluminated plots, whereas intensive growth of algae, duckweed and hydrophytes was found in the illuminated ones. Plant growth was not affected by the different treatments. Seasonal changes in CH₄ emission determined by a closed chamber method indicated that illumination had no or only minor effects on CH₄ emissions when rice straw was incorporated or was not applied, but significantly reduced CH₄ emissions when rice straw was surface-applied. Methanogenesis occurring in the soil-floodwater interface was further investigated in two lab-scale model experiments measuring methanogenic activity. As a result, more activated methanogenesis was found in the surface-applied rice straw and the soil around the straw compared with the soil incubated without rice straw. The magnitude of the methanogenic activity in the rice straw incubated under illuminated conditions was significantly lower than that incubated in the dark. Consequently, this study demonstrates that methanogenesis in paddy soil occurs even in the soil-floodwater interface if plant residues like rice straw exist, and such methanogenesis is likely to be suppressed by growth of indigenous phototrophs under illumination.     

Drying Enhancement of Rough Rice by an Electric Field

Corona discharge produced by a multiple point-to-plate high-voltage electric field (HVEF) was used to investigate the enhancement of rough rice drying and its effect on rice fissuring and germination. The HVEF consisted of a 16 needle point cathode with a direct current power supply, and a grounded stainless steel plate anode. The drying rate of the treated rough rice was notably greater than that of the control, and the drying rate was described by an exponential model. There was a good agreement between the predicted and experimental results (coefficient of determination R²=0·98). The electric field treatment significantly enhanced drying but had no effect on rice fissuring at a lower temperature. The average drying rate of the treated rice increased 2·83, 1·59 and 1·63 times at 25, 40 and 50°C, respectively, compared to the corresponding control. The drying rate also increased with increasing electric field strength. The electric field treatment did not have significant effects on the percentage of kernels having heavy fissures or the germination rate of rough rice (probability P>0·05). The total number of fissured kernels in the treated sample was increased compared to the control.