Anthracnose of centipede grass caused by Colletotrichum caudatum

Anthracnose disease was found on centipede grass [Eremochloa ophiuroides (Munro) Hack.] planted as a ground cover on paddy field levees in Shiga Prefecture in 2004. The symptoms were ear blight, stalk blight, and leaf spots. The causal fungus was morphologically identified as Colletotrichum caudatum (Sacc.) Peck. This is the first report of centipede grass anthracnose caused by C. caudatum.     

Na?ve-like conversion enhances the difference in innate in vitro differentiation capacity between rabbit ES cells and iPS cells

Quality evaluation of pluripotent stem cells using appropriate animal models needs to be improved for human regenerative medicine. Previously, we demonstrated that although the in vitro neural differentiating capacity of rabbit induced pluripotent stem cells (iPSCs) can be mitigated by improving their baseline level of pluripotency, i.e., by converting them into the so-called “naïve-like” state, the effect after such conversion of rabbit embryonic stem cells (ESCs) remains to be elucidated. Here we found that naïve-like conversion enhanced the differences in innate in vitro differentiation capacity between ESCs and iPSCs. Naïve-like rabbit ESCs exhibited several features indicating pluripotency, including the capacity for teratoma formation. They differentiated into mature oligodendrocytes much more effectively (3.3–7.2 times) than naïve-like iPSCs. This suggests an inherent variation in differentiation potential in vitro among PSC lines. When naïve-like ESCs were injected into preimplantation rabbit embryos, although they contributed efficiently to forming the inner cell mass of blastocysts, no chimeric pups were obtained. Thus, in vitro neural differentiation following naïve-like conversion is a promising option for determining the quality of PSCs without the need to demonstrate chimeric contribution. These results provide an opportunity to evaluate which pluripotent stem cells or treatments are best suited for therapeutic use.     

Gene dropping analysis of founder contributions in a closed Japanese black cattle population

Gene dropping simulation was applied to Japanese Black cattle population in Hyogo prefecture, to examine the survivals of alleles originated from founder animals. In the analysis, unique alleles were assigned to founders, and the genotypes of all descendants along the actual pedigree were generated through Monte Carlo simulation following Mendelian segregation rules. By replicating this process 10 000 times, the distribution of frequencies of alleles from each founder was estimated. From the distribution, several quantities useful for the management of genetic diversity, such as the probability of allele extinction and the probability of alleles surviving at a critically low frequency were derived. The materials used were 68 781 animals born in 1955–1998 and their pedigree records traced back to the population in 1937 or before. The expected number of alleles retained in the population drastically decreased during the analyzed period, and reached to 57.9 in the population of 1998, which was only 3.3% of the total number of alleles assigned to founders. Detailed analysis of major founders with relatively high genetic contributions to the current population revealed that alleles from most of the major founders are now at high risk of future extinction. These results strongly suggest that for the management of genetic diversity, the genetic contributions of founders are not fully informative, and emphasize the importance of the detection of live animals having founder alleles with high extinction possibilities.     

Oxytocin Cells in the Supraoptic Nucleus Receive Excitatory Synaptic Inputs from the Contralateral Supraoptic and Paraventricular Nuclei in the Lactating Rat

The present experiments were undertaken to examine whether oxytocin cells in the supraoptic nucleus receive synaptic inputs from the contralateral supraoptic nucleus or paraventricular nucleus. Using urethane-anesthetized lactating rats, extracellular action potentials were recorded from single oxytocin or vasopressin cells in the supraoptic nucleus. Electrical stimulation was applied to the contralateral supraoptic nucleus or paraventricular nucleus, and responses of oxytocin or vasopressin cells were analyzed by peri-stimulus time histogram or by change in firing rate of oxytocin or vasopressin cells. Electrical stimulation of the contralateral supraoptic nucleus or paraventricular nucleus did not cause antidromic excitation in oxytocin or vasopressin cells but caused orthodromic responses. Although analysis by peri-stimulus time histogram showed that electrical stimulation of the contralateral supraoptic nucleus or paraventricular nucleus caused orthodromic excitation in both oxytocin and vasopressin cells, the proportion of excited oxytocin cells was greater than that of vasopressin cells. Train stimulation applied to the contralateral supraoptic nucleus or paraventricular nucleus at 10 Hz increased firing rates of oxytocin cells and decreased those of vasopressin cells. The results of the present experiments suggest that oxytocin cells in the supraoptic nucleus receive mainly excitatory synaptic inputs from the contralateral supraoptic nucleus and paraventricular nucleus. Receipt these synaptic inputs to oxytocin cells may contribute to the synchronized activation of oxytocin cells during the milk ejection reflex.     

Age‐dependent distribution of juvenile southern bluefin tuna (Thunnus maccoyii) on the continental shelf off southwest Australia determined by acoustic monitoring

Juvenile southern bluefin tuna (Thunnus maccoyii, SBT) were monitored in nearshore waters off southwest Australia using acoustic tagging and monitoring over five austral summers (2002/2003–2006/2007) to determine patterns in age‐based distribution of SBT. A total of 20–70 receivers were deployed in early December along one to three cross‐shelf transects and at three inshore topographic features (lumps) where SBT are known to occur; and a total of 59–84 juvenile SBT (41–90 cm fork length) were tagged and released each year. After several months, receivers were recovered, and data extracted. In 2002/2003 and 2003/2004, 2‐yr‐old SBT were detected more frequently in nearshore areas than did 1‐yr old fish. Similarly in 2004/2005 and 2006/2007, it was the larger 1‐yr‐old SBT that were detected more frequently at inshore lumps (>85% of detections) while small 1‐yr‐old SBT were detected more widely over the study area. In 2005/2006, although large 1‐yr‐old SBT were still detected more frequently at inshore lumps than small 1‐yr old SBT, the percentage of all detections at lumps was lower at 31.5%, indicating wider distribution of both small and large age‐1 fish. The observed age‐dependent distribution pattern may be enhanced by the distribution of prey, which disperse or concentrate depending on the local oceanography.     

Metagenomic analysis using 16S ribosomal RNA genes of a bacterial community in an urban stream,the Tama River,Tokyo

In an effort to determine genus- or species-level taxonomic profiles and diversity of bacterial consortia in the Tama River around urban Tokyo, next-generation sequencing technology targeting a 16S ribosomal RNA (rRNA) gene amplicon was employed. Metagenomic analysis performed by an Ion Personal Genome Machine after sequentially filtering samples through 5-, 0.8- and 0.2-μm filters yielded 1.48 Gb of 16S sequences (average 2.38 M reads/sample). The results indicated that half of the bacterial sequences belonged to Proteobacteria, followed by Bacteroidetes, Actinobacteria and Cyanobacteria. Flavobacterium (Bacteroidetes), possibly including a potential fish pathogen, was the most numerous genera in the Tama River metagenome, and accounted for?~?16% of assigned 16S reads, followed by Mycobacterium. Other dominant bacterial genera including Zoogloea, Sediminibacterium, Hyphomicrobium, Sphingopyxis, Thiothrix and Lysobacter, were thought to be associated with waste water and sludge. MiSeq metagenomic analysis revealed that environmental factors, particularly water temperature, influenced the bacterial composition throughout the year, with a strong negative correlation observed for Proteobacteria and a positive correlation for Bacteroidetes. In terms of bacterial genera, Flavobacterium was positively correlated with temperature, while Polaromonas, Pseudomonas and Bradyrhizobium were negatively correlated with this, suggesting dynamic change in the free-living bacterial population throughout the year and versatile adaptation strategies in relation to environmental factors.     

Comparing the carbon sequestration capacity of temperate deciduous forests between urban and rural landscapes in central Japan

Urbanisation is increasing tremendously in some parts of the world. Consequently, many rural forests may become depleted, although many opportunities exist for urban forests to increase. However, few studies have quantified the carbon (C) sequestration capacities of urban and rural forests in specific climatic zones. The present study compared carbon sequestration in two temperate deciduous forests located in Nagoya and Toyota, central Japan. The Nagoya University forest represented an urban forest, and a site in Toyota represented a rural forest. The urban forest at Nagoya University had comparatively smaller areas of green space and larger areas of buildings and roads. Land uses for building and road, which are typical of urban areas, result in smaller diurnal temperature ranges but higher air temperature, vapour pressure deficit, and atmospheric carbon dioxide (CO₂) concentration. The urban forest in this study exhibited higher gross ecosystem exchange (GEE), especially in the active growing season from May to September, suggesting the possible effect of CO₂ fertilisation. However, higher air temperatures caused comparatively smaller net ecosystem exchange (NEE) because of higher ecosystem respiration (RE). Although both forests functioned as CO₂ sinks at annual time scales, the rural Toyota forest site (5.43 t C ha^–1 yr^–1) had 36% higher net ecosystem production (NEP=–NEE; the negative sign indicates uptake by the forest ecosystem from the atmosphere) than that at the urban forest. The higher normalised respiration (i.e., RE/GPP ratio; GPP=–GEE where GPP represents gross primary production) at the Nagoya University forest might be attributable to factors associated with the degree of urbanisation. Thus, in temperate forests, factors associated with urbanisation may reduce the atmospheric carbon sink function by accelerating respiration. This is an issue of global interest, as many countries are experiencing rapid urbanisation.     

Interannual variation in summer habitat utilization by juvenile southern bluefin tuna (Thunnus maccoyii) in southern Western Australia

The spatial habitat utilization of juvenile southern bluefin tuna in southern Western Australia was investigated using automated acoustic receivers with acoustic transmitters implanted in tagged fish during three austral summers (2004/2005, N = 79 fish, 2005/2006, N = 81, 2006/2007, N = 84). Seventy acoustic receivers were deployed at three cross-shelf lines and three coastal topographic features (lumps) between December and May. We observed markedly different patterns of habitat utilization between the three seasons: (i) aggregation at lumps in 2004/2005 and 2006/2007, and (ii) wide distribution over the continental shelf (i.e., few occurring at lumps) in 2005/2006. Vertical profile by conductivity-temperature-depth casts showed these spatial shifts were caused by interannual changes in the presence of sub-Antarctic water. The sub-Antarctic water was present in the subsurface layer close to the continental slope only during 2005/2006, and the area had higher chlorophyll-a concentrations than the coastal areas, including at the lumps. These environmental characters, related to the nutrient rich sub-Antarctic water, appear to have a strong influence on fish distributions in 2005/2006, and may occur generally during La Niña events. Interannual fluctuations in habitat utilization will influence detection of fish in recruitment monitoring surveys and thus bias the resulting juvenile abundance indices.     

Effect of Japan Sea climate on geographic distribution ofCastanopsis sieboldii andC. cuspidata

The geographic distributions ofCastanopsis sieboldii andCastanopsis cuspidata overlap each other on the Pacific coast of Japan, but on the Japan Sea coastC. sieboldii tends to dominate at similar temperatures. The authors attempted to explain this phenomenon by analyzing the effects of climatic factors. Nuts were collected from the Pacific and Japan Sea coasts of the Kinki and Chugoku districts, and the nut characteristics and the number of layers of epidermis in the leaves of the seedlings were investigated. The distribution ofC. sieboldii andC. cuspidata was satisfactorily explained by a multiple regression equation that was developed using three climatic factors: maximum snow depth in winter, lowest temperature in the coldest month, and annual mean temperature, out of fourteen such factors that were considered. The estimated distribution ofC. sieboldii andC. cuspidata from the multiple regression equation agreed with 66.2% of the actual observations.