Carrier rate of the c.235G>C mutation in the bovine isoleucyl-tRNA synthetase (IARS) gene of Japanese Black cows at Kagoshima prefecture, Japan,and analysis of the metabolic profiling and reproductive performance of heterozygous cows

Bovine isoleucyl-tRNA synthetase (IARS) disorder, a major cause of weak calf syndrome, is caused by a homozygous missense (c.235G>C) mutation in the bovine IARS gene of Japanese Black (JB) cattle, which was identified in 2013. However, the extent to which the carrier rate has changed at Kagoshima prefecture, Japan, and whether the carrier status is associated with any clinical or reproductive problems, have yet to be ascertained. In this study, using a real-time polymerase chain reaction-based genotyping assay, we determined the carrier rate in a regional JB cow population at Kagoshima prefecture. Comparative analyses were performed on the metabolic profile test (MPT) results and reproductive performance data obtained for heterozygous carrier and homozygous wild-type cows. In 2009 and 2018, DNA samples were collected from 130 and 462 clinically healthy JB cows, respectively, in Kagoshima prefecture. MPT results and reproductive performance data were evaluated for 62 cows, comprising four heterozygous carriers and 58 wild-type cows. Genotyping revealed that the carrier rate was 6.9% in 2009 and 1.5% in 2018, the difference of which was statistically significant (P<0.005). There were no statistically significant differences between the carrier and wild-type cows with respect to either MPT results or reproductive performance, indicating that the carrier cows have necessary IARS activity to maintain minimal health and reproductive potential.     

New technique of sex preselection for increasing female ratio in boar sperm model

In this study, we tried to optimize the porcine semen extender conditions to maximize the differences between live X chromosome-bearing (X) spermatozoa and to Y chromosome-bearing (Y) spermatozoa without a decline in the fertility rate at different pH conditions during storage. We observed the viability of X and Y boar spermatozoa in acidic (pH 6.2), original (pH 7.2), and alkaline condition (pH 8.2) for 5 days to investigate the effect of storage conditions on the X to Y spermatozoa ratio. The functional parameters of spermatozoa were also examined to evaluate sperm quality. Sperm motility was preserved at pH 7.2 and pH 6.2 for 3 days, while sperm motility at pH 8.2 decreased significantly after 2 days. Non-capacitated spermatozoa increased while capacitated spermatozoa decreased during storage. Sperm viability decreased significantly duration-dependent under all pH conditions, but there was no significant difference during storage at pH 6.2 and 7.2. The X: Y ratio of live spermatozoa in acidic condition was maximized (1.2:1) without affecting the sperm function and fertility-related protein expression after 2 days compared to original conditions. Moreover, insemination of sows using acidic extender increased the number of female pups on days 1 and 2 of preservation. These results indicate that the production of female offspring may increase when acidic BTS is used for 2 days without affecting the success rate of AI. Above all, this method is simple and economical compared to other methods.     

Response of Rice Seedlings to Copper Toxicity and Acidity

Metal toxicity and soil acidity affect plant growth. A hydroponic experiment was conducted to simulate effects of pH and copper concentration [Cu] on early growth and biomass production of high-yielding rice seedlings (Oryza sativa L. cv. ‘NIAB 6’). The rice seedlings were allowed to grow in Yoshida nutrient solution with 1 (control), 8, 16, and 32 μM Cu at buffered pH levels of 4.5, 5.0, and 5.5, respectively. Shoot and root growth, leaf chlorophyll content, and root lipid peroxidation and K⁺ leakage of 15-day-old rice seedlings were determined. Results show that [Cu] had significant adverse effects on rice seedlings. Shoot height and root length were reduced by 18%–60% and 7%–69%, respectively, compared with the control, and shoot and root weight decreased by 26%–56%, and 25%, respectively, in response to progressive increases in [Cu]. Similarly, leaf chlorophyll content decreased by 150%–245% compared with the control treatment. Rice seedling roots suffered from significant increases in lipid peroxidation followed by K⁺ leakage (> 8–23 times) in response to increasing [Cu]. Averaged across [Cu], seedling growth and biomass were greater at pH 5.5 than at other pH treatments. In some instances, increasing pH minimized the adverse effects of Cu at low concentrations on rice seedlings.     

Role of active aluminum in the formation of water-stable macroaggregates

Soil structure is determined by the arrangement of particles in soil and the particles of sand, silt, and clay bind together into aggregates of various sizes by organic and inorganic materials. Structural stability which is the ability of the aggregates and pores to remain intact when subjected to stress, markedly affects crop production and soil erosion (Tisdall 1996). Since water, either directly as rainfall or as surface runoff is the main agent of aggregate breakdown, in the analyzes of stable soil aggregation, the term water-stable aggregation is generally used (Lynch and Bragg 1985). Water-stable aggregates have been divided into micro aggregates < 0.25 mm dia.) and macro aggregates (> 0.25 mm dia.) (Edwards and Bremner 1967; Tisdall and Oades 1982). Microaggregates show a relatively high stability against physical disruption (Edwards and Bremner 1967). On the other hand, macro aggregates are sensitive to soil management (Tisdall and Oades 1982).

There are many reports on the relationships between the aggregate stability and the soil physicochemical properties. For example, significant correlations were found between the aggregate stability and the amounts of organic C (Tisdall and Oades 1982), total N, and carbohydrates or the CEC (Chaney and Swift 1984). However, most of these studies were conducted in non-volcanic ash soils. Volcanic ash soils are widely distributed in Japan and are very important soils for crop production. The objective of this study was, therefore, to obtain more information on the relationship between the degree of macro aggregation and the soil physicochemical properties in non-volcanic and volcanic ash soils.     

Effects of Dietary Vitamin C on Blood Chemistry and Nonspecific Immune Response of Juvenile Red Sea Bream,Pagrus major

A trial was conducted to determine the effect of ascorbyl‐2‐monophosphate Na/Ca (AMP‐Na/Ca) on blood chemistry and nonspecific immune response of red sea bream juveniles. Test diets with three levels of AsA (free, 107, and 325 mg/kg diet) were fed to juvenile red sea bream (36.0 ± 1.3 g) two times a day for 3 wk. There were no significant differences in hematocrit, glucose, and blood urea nitrogen. Total cholesterol and triglyceride in plasma of fish fed AsA‐free diet was significantly (P < 0.05) higher than that of fish fed two other diets. There were no significant differences in serum albumin, total bilirubin, and total serum protein. Glutamyl oxaloacetic transaminase in serum of fish fed diets containing 107 and 325 mg of AsA were significantly (P < 0.05) lower than that of fish fed AsA‐free diet. Serum lysozyme activity (LA) of fish fed diets containing 107 and 325 mg of AsA were significantly (P < 0.05) higher than that of fish fed AsA‐free diet. There was no significant difference in mucus LA. The results mentioned above demonstrated that AMP‐Na/Ca is a bioavailable AsA source for red sea bream juveniles. Supplement of more than 107 mg AsA/kg in diets improved blood chemistry and nonspecific immune function of red sea bream juveniles.     

Preparation and characterizations of polypyrrole on liquid ammonia pre-treated wool fabric

Wool fabric was treated with liquid ammonia at -40 °C for 30 and 60 s prior to the application of polypyrrole (PPy). The polymer was deposited on wool fiber using the chemical oxidation method with 0.02 and 0.05 mol/l (Py) monomer concentration and FeCl₃ as a catalyst. Functional groups of wool samples were analyzed using FT-IR, and surface morphology was investigated using SEM micrographs. Properties such as water absorbency, surface resistivity, abrasion resistance, weight add-on, and air permeability of coated specimens were explored. The FT-IR outcomes revealed the liquid ammonia pre-treatment changed the amount of amide I (NH), cystic acid, cystic monoxide, and dioxide content of the fiber. SEM micrographs revealed the descaling of wool surface after pre-treatment and smooth coating of polymer. Pre-treatment of wool in liquid ammonia improved absorbency of wool fabric with respect to the treatment duration. The surface resistivity of wool fabric decreased with the increase of monomer concentration and pre-treatment duration. The results of abrasion resistance confirmed that the pre-treated fabric exhibited lower loss of polymer after 200 cycles of abrasion. The weight of the fabric was increased and air permeability decreased when the monomer concentration and liquid ammonia pre-treatment duration was increased.     

Association mapping reveals loci associated with multiple traits that affect grain yield and adaptation in soft winter wheat

Genome-wide association studies (GWAS) are useful to facilitate crop improvement via enhanced knowledge of marker-trait associations (MTA). A GWAS for grain yield (GY), yield components, and agronomic traits was conducted using a diverse panel of 239 soft red winter wheat (Triticum aestivum) genotypes evaluated across two growing seasons and eight site-years. Analysis of variance showed significant environment, genotype, and genotype-by-environment effects for GY and yield components. Narrow sense heritability of GY (h ²  = 0.48) was moderate compared to other traits including plant height (h ²  = 0.81) and kernel weight (h ²  = 0.77). There were 112 significant MTA (p < 0.0005) detected for eight measured traits using compressed mixed linear models and 5715 single nucleotide polymorphism markers. MTA for GY and agronomic traits coincided with previously reported QTL for winter and spring wheat. Highly significant MTA for GY showed an overall negative allelic effect for the minor allele, indicating selection against these alleles by breeders. Markers associated with multiple traits observed on chromosomes 1A, 2D, 3B, and 4B with positive minor effects serve as potential targets for marker assisted breeding to select for improvement of GY and related traits. Following marker validation, these multi-trait loci have the potential to be utilized for MAS to improve GY and adaptation of soft red winter wheat.     

Postharvest quality response of strawberries with aloe vera coating during refrigerated storage

Strawberries (Fragaria × ananassa Duch.) were coated either with chitosan (1, 1.5, and 2% solution, w/v) or aloe vera (AV) gel and the coatings were air dried. Coated strawberries were put in a polypropylene box and stored in refrigerator (6 ± 1°C and 50 ± 5% relative humidity. The success of coating in retaining the postharvest quality of the strawberries was evaluated by determining respiration rate, firmness, weight loss, external colour change, ascorbic acid content, total soluble solids, acidity, pH, microbial decay and sensory quality. The incidence of microbial rot started on day-6 in uncoated and 1% chitosan coated strawberries. Strawberries coated with 1.5 and 2% chitosan were affected by microbial decay on day-9 of storage. On the other hand, rot incidence was initiated in AV gel coated strawberries on day-15 of storage. Aloe vera gel or chitosan coating reduced respiration rate, weight loss, and microbial decay and preserved firmness, ascorbic acid content, and other quality parameters, thus delaying ripening and the progress of fruit decay due to senescence or microbial attack. Furthermore, AV gel delayed the changes in external colour and retained all other postharvest quality of strawberries compared to chitosan coated or uncoated ones throughout the storage.     

Performance of Bangladesh indigenous rice in a weed infested field and separation of allelopathy from resource competition

This study aimed to identify the potential allelopathic indigenous rice (Oryza sativa L. ssp. indica) varieties from Bangladesh using a performance study in a weed‐infested field and to assess the extent of allelopathic interference relative to resource competition in a glasshouse experiment. Six varieties – namely, “Boterswar,” “Goria,” “Biron” and “Kartiksail” as the most allelopathic, “Hashikolmi” as weakly allelopathic and “Holoi” as nonallelopathic – were raised following a nonweed control method. The infestation levels of weed species were calculated using Simpson's Diversity Index (SDI), which ranged from 0.2 to 0.56. However, a significant correlation coefficient (0.87, P < 0.001) was obtained from these field data compared with the root inhibition percentage from the laboratory bioassay, and the “Boterswar” variety was the most allelopathic. The interactions between the allelopathic variety “Boterswar,” weakly allelopathic variety “Hashikolmi” and Echinochloa oryzicola via a target (rice)‐adjacent (E. oryzicola) cogrowth culture were determined in a hydroponic arrangement. The relative competitive intensity (RCI) and the relative neighbor effect (RNE) values showed that the crop–weed interaction was facilitation for “Boterswar” and competition for “Hashikolmi” and E. oryzicola in rice/E. oryzicola cogrowth cultures. The allelopathic effects of “Boterswar” were much higher than the resource competition in rice/E. oryzicola cogrowth cultures. The converse was observed for “Hashikolmi.” Moreover, the mineral content of E. oryzicola was severely affected by “Boterswar”/E. oryzicola cogrowth cultures’ exudate solution. Therefore, the allelopathic potential of “Boterswar” variety might be useful for developing the weed‐suppressing capacity of rice, which will likely have a significant influence on paddy weed control.