Broad range 16S rRNA gene PCR compared to bacterial culture to confirm presumed synovial infection in horses

The objectives of the present study were to evaluate the accuracy of broad range 16S rRNA gene PCR compared to bacterial culture for the detection of synovial infection in horses. The study included 57 synovial fluid samples from horses with presumed synovial infection and a control group consisting of 31 synovial fluid samples originating from clinically normal horses and horses with aseptic synovial inflammation. All samples were analysed by 16S PCR with reverse line blot (RLB) hybridisation. Synovial fluid samples were cultured using conventional agar plate methods (APM) and/or blood culture medium (BCM). The results of the study showed a superior detection rate (89.5%) for 16S PCR with RLB. Bacterial culture had lower sensitivity, but highly acceptable detection rates (77.6%) were observed using BCM. APM had very low sensitivity (37.8%) and infection was never detected by plate isolation without positive incubation in BCM. The highest sensitivity (91.8%) for the detection of synovial infection was achieved when the results of incubation in BCM and 16S PCR were combined. For all the tests, the specificity was higher than 90%.     

Host status of cover crops for root-lesion nematodes (Pratylenchus spp.) associated with apple orchards in South Africa

Journal of Plant Diseases and Protection - The host response of 17 cover crop cultivars to infection by single-species populations of Pratylenchus hippeastri, Pratylenchus vulnus and Pratylenchus...     

Considering sink strength to model crop production under elevated atmospheric CO2

Climatic changes and elevated atmospheric CO₂ concentrations will affect crop growth and production in the near future. Rising CO₂ concentration is a novel environmental aspect that should be considered when projections for future agricultural productivity are made. In addition to a reducing effect on stomatal conductance and crop transpiration, elevated CO₂ concentration can stimulate crop production. The magnitude of this stimulatory effect (‘CO₂ fertilization’) is subject of discussion. In this study, different calculation procedures of the generic crop model AquaCrop based on a foregoing theoretical framework and a meta-analysis of field responses, respectively, were evaluated against experimental data of free air CO₂ enrichment (FACE) environments. A flexible response of the water productivity parameter of the model to CO₂ concentration was introduced as the best option to consider crop sink strength and responsiveness to CO₂. By varying the response factor, differences in crop sink capacity and trends in breeding and management, which alter crop responsiveness, can be addressed. Projections of maize (Zea mays L.) and potato (Solanum tuberosum L.) production reflecting the differences in responsiveness were simulated for future time horizons when elevated CO₂ concentrations and climatic changes are expected. Variation in future yield potential associated with sink strength could be as high as 27% of the total production. Thus, taking into account crop sink strength and variation in responsiveness is equally relevant to considering climatic changes and elevated CO₂ concentration when assessing future crop production. Indicative values representing the crop responsiveness to elevated CO₂ concentration were proposed for all crops currently available in the database of AquaCrop as a first step in reducing part of the uncertainty involved in modeling future agricultural production.     

Crop rotation sequencing to minimize yield losses of summer-irrigated lowland rice in Myanmar caused by the rice root-knot nematode Meloidogyne graminicola

Abstract

The effect of different rice-based crop rotation sequences on the population densities of Meloidogyne graminicola and on the yield of rice was evaluated in a microplot experiment under lowland rice field conditions. Ten treatments of cropping sequences were grown in four successive growing seasons: continuous growing of the susceptible rice cultivar Thihtatyin (rice-rice-rice-rice), four treatments of 1- season crop rotation sequences (rice-rice-chickpea-rice, rice-rice-black gram-rice, rice-rice-soybean-rice, rice-rice-cowpea-rice), and five treatments of 2-season crop rotation sequences (groundnut-rice-chickpea-rice, green gram-rice-black gram-rice, cowpea-rice-soybean-rice, sesame-rice-cowpea-rice, sunflower-rice-sesame-rice). Population densities of M. graminicola recovered from the rice plants and the nematode multiplication factors (Mf) in the soil in the continuous rice cropping sequence (rice-rice-rice-rice) was the highest among the ten cropping sequences. Lowest nematode Mf in the soil was observed in the 2-season crop rotation sequence sunflower-rice-sesame-rice and the highest was observed in the 1-season crop rotation sequence rice-rice-cowpea-rice among the nine crop rotation sequences. Highest rice yield was obtained in the 2-season crop rotation sequences green gram-rice-black gram-rice, sesame-rice-cowpea-rice and sunflower-rice-sesame-rice, which were about 2 times higher compared with the 1-season crop rotation sequences and about 3 times higher compared with the continuous rice cropping sequence.     

Multi-criteria decision making methods to address rural land allocation problems: A systematic review

Land allocation has been an important issue in land use planning research studies. Land allocation involves different multifunctional activities of maximizing environmental, economic and social benefits. Multi-criteria decision making (MCDM) method is the most popular tool to optimize land allocation problems by considering decision variables, conflicting objectives, and criteria. Hence, decision-makers face problems on how to optimize the land allocation while minimizing the conflicting trade-offs existing in the decision analysis. With this review study, we aim at identifying and extracting information on MCDM methods to solve land allocation problems from English language articles published between 2000 and 2019 and indexed by four scientific literature databases (Web of Science, Science Direct, Scopus, Google scholar). To this end, we applied a systematic literature review approach, i.e. the Preferred Reporting Items for Systematic Reviews and Meta-Analysis procedure (Moher et al., 2009), with a structured database search expression. 120 articles were selected of which, after careful screening of title, keywords and abstract, 69 were retained for detailed review. This review study report compiles comprehensive information by classifying the papers into application area, optimization objectives, criteria used, decision techniques, publication year and study region. In summary, we found that in the last two decades, the use of the MCDM method has increased, particularly in Europe and China. AHP (analytical hierarchal process) is frequently used for multi-attribute land allocation problems with reference to ecotourism and ecosystem management. LP (linear programming) and SA (simulating annealing) methods are predominantly used to optimize multi-objectives complex agricultural and forest land allocation problems respectively.     

Most fish destined for fishmeal production are food‐grade fish

Marine fisheries target and catch fish both for direct human consumption (DHC) as well as for fishmeal and fish oil, and other products. We derived the fractions used for each for 1950–2010 by fishing country, and thus provide a factual foundation for discussions of the optimal use of fisheries resources. From 1950 to 2010, 27% (~20 million tonnes annually) of globally reconstructed marine fisheries landings were destined for uses other than DHC. Importantly, 90% of fish destined for uses other than DHC are food‐grade or prime food‐grade fish, while fish without a ready market for DHC make up a much smaller proportion. These findings have implications for how we are using fish to feed ourselves or, more appropriately, how we are not using fish to feed ourselves.     

Effect of the fungicide imazalil on hepatic microsomal cytochrome P-450 and cytochrome P-450 dependent activities in the Bobwhite quail (Colinus virginianus)

Bobwhite quails were treated with imazalil for 8 weeks. The fungicide was given admixed in the food at 0, 100, 300, 500 and 1000 mg kg^?1. Even at the highest dose tested, imazalil did not affect the liver weight or the hepatic microsomal protein content. In treated quails, no significant induction of cytochrome P-450 or NADPH-cytochrome c-reductase activity was observed. Furthermore, imazalil did not induce or inhibit 7-ethoxyresorufin or 7-ethoxycoumarin O-deethylase in quail microsomes. Only a slight but significant increase by 35% and 49% in aniline hydroxylase activity was measured for the 500- and 1000-mg kg^?1 dose levels, respectively. After a drug-free period of one week, aniline hydroxylase activity returned to control values, indicating that the effect was fully reversible. It is concluded that imazalil does not induce or inhibit drug-metabolizing enzymes in the quail, even at doses which exceed by far the maximum levels currently used to dress seed under field conditions (100 mg kg^?1).     

Components of resistance to late blight (Phytophthora infestans) in eight South AmericanSolanum species

Four components of partial resistance toPhytophthora infestans were measured after inoculation in the greenhouse and in the field ofSolanum arnezii x hondelmannii, S. berthaultii, S. circaeifolium, S. leptophyes, S. microdontum, S. sparsipilum, S. sucrense andS. vernei, and four hybrid progenies ofS. microdontum withS. tuberosum. The four components were infection efficiency, lesion growth rate, generation time and sporulation capacity. The results were compared with resistance ratings derived from field experiments, and with observations made on the potato cultivars Bintje, Bildstar, Libertas and Pimpernel. Genetic variation for all components was found, while the relative importance of the components of partial resistance appeared to vary between the species. InS. microdontum, generation time, infection efficiency and lesion growth rate, and inS. tuberosum infection efficiency, lesion growth rate and sporulation capacity appeared positively associated, but in other species no such association was found. A strong hypersensitive reaction, the expression of which appeared to depend on environmental conditions, was found inS. microdontum. ForS. berthaultii, infection efficiency appeared to be the main resistance component.Abbreviations ADPC area under the disease progress curve - IE infection efficiency - LGR lesion growth rate - GT generation time - SC sporulation capacity     

Classification of Dutch and German avian reoviruses by sequencing the sigma C protein

We have amplified, cloned and sequenced (part of) the open reading frame of the S1 segment encoding the sigma C protein of avian reoviruses isolated from chickens with different disease conditions in Germany and The Netherlands during 1980 up to 2000. These avian reoviruses were analysed phylogenetically and compared with sequences of avian reoviruses in the Genbank database. The avian reoviruses could be grouped in 5 different genotyping clusters and this classification was identical when the sequences were compared of the 5' end, the 3' end or the whole open reading frame of the sigma C protein. Therefore sequencing of either part of the gene encoding the sigma C protein seems to be reliable for classification. We were unable to identify a correlation between sigma C sequences of the avian reoviruses and the disease condition they were isolated from. The sequences found in The Netherlands and in Germany are, like those in Taiwan, more dispersed than the known avian reovirus sigma C sequences in the USA and Australia. We did not establish temporal or geographic differences in the avian reoviruses studied.