Blood Polymorphism in West African Breeds of Sheep

This paper reports the blood groups and blood protein distribution in West African sheep breeds. About 100 animals of the Djallonke, Fulani and Touabire breeds were sampled for blood polymorphism analysis. Their blood groups were typed by haemolytic and agglutination reactions, and their blood proteins by starch gel electrophoresis. Almost all the loci analysed showed variability in the three breeds, with the Touabire and Fulani being closer to each other than to the Djallonke.     

Epidemiology and microscopic diagnosis of tuberculosis in pigs and small ruminants slaughtered at Bobo-Dioulasso abattoir,Burkina Faso

Bovine tuberculosis (bTB) is a zoonotic, infectious, chronic and contagious disease, caused by Mycobacterium bovis that mainly affects cattle. This pathology has a negative impact on animals and animal products trade. Unfortunately, in Burkina Faso where agriculture and livestock sectors represent around 80% of the socio-economic activities, the real situation of the disease is not well known especially in small ruminants and swine. Thus, our study focused on both the epidemiology and the microbiological diagnosis of tuberculosis (TB) in small ruminants and pigs slaughtered at Bobo-Dioulasso abattoir. A prospective study was conducted between August 2017 and December 2017. Epidemiological data collection was performed during routine meat inspection; moreover, samples were taken and transported to the Bacteriology laboratory of Centre Muraz for microbiological analyses. This diagnosis consisted in search of Acid Fast Bacilli (AFB) using the hot Ziehl–Neelsen staining. Out of a total of 14 648 small ruminants and 2430 pigs slaughtered during the study period, 156 and 17 had lesions suggestive of bTB with prevalence of 1.07% and 0.7%, respectively. Females and those between 2 and 4 years old were mainly infected. The most affected organs were: lungs, liver, spleen and lymph nodes. Finally, microscopy revealed 43.35% (75/173) of positive cases for AFB. These results confirm the presence of bTB in small ruminants and pigs in Burkina Faso. Efforts must still be made in the fight against this zoonosis in order to limit its economic and public health impacts.     

Contrasted optimal environmental windows for both sardinella species in Senegalese waters

We investigate Sardinella aurita and Sardinella maderensis recruitment success relative to the variability of oceanographic conditions in Senegalese waters using generalized additive models (GAM). Results show that recruitment of both species is marked by a strong intra‐annual (seasonal) variation with minimum and maximum in winter and summer, respectively. Their interannual variations are synchronous until 2006 (recruitment decreasing), while from 2007 there is no synchrony. The model developed shows that sardinella recruitment variability is closely related to the tested environmental variables in the study area. However, the key environmental variables influencing the recruitment success are different for both species: the Coastal Upwelling Index and the sea surface temperature for S. aurita and S. maderensis, respectively. We report that recruitment success of S. aurita and S. maderensis are associated with distinct ranges of sea surface temperature, upwelling intensity, wind‐induced turbulence, concentration of chlorophyll‐a and north Atlantic oscillation index. Considering food security and socio‐economic importance of both stocks, we recommend that consideration is given to the environmental variability in the small pelagic fish national management plans, particularly in the context of climate change.     

Field detection of resistance to isometamidium chloride and diminazene aceturate in Trypanosoma vivax from the region of the Boucle du Mouhoun in Burkina Faso

A longitudinal study assessed the chemoresistance to isometamidium chloride (ISM) and diminazene aceturate (DA) in the region of the Boucle du Mouhoun in Burkina Faso. A preliminary cross-sectional survey allowed the identification of the 10 villages with the highest parasitological prevalences (from 2.1% to 16.1%). In each of these 10 villages, two herds of approximately 50 bovines were selected, one being treated with ISM (1mg/kg b.w.) and the other remaining untreated as control group. All animals (treated and untreated herds) becoming infected were treated with DA (3.5mg/kg b.w.). In total, 978 head of cattle were followed up. Fortnightly controls of the parasitaemia and PCV were carried out during 8 weeks. The main trypanosome species was Trypanosoma vivax (83.6%) followed by Trypanosoma congolense (16.4%). In two villages, less than 25% of the control untreated cattle became positive indicating no need to use prophylactic treatment. These two villages were not further studied. Resistance to ISM was observed in 5 of the remaining 8 villages (Débé, Bendougou, Kangotenga, Mou and Laro) where the relative risk (control/treated hazard ratios) of becoming infected was lower than 2 i.e. between 0.89 (95% CI: 0.43-2.74) and 1.75 (95% CI: 0.57-5.37). In contrast, this study did not show evidence of resistance to DA in the surveyed villages with only 8.6% (n=93) of the cattle relapsing after treatment. Our results suggest that because of the low prevalence of multiple resistances in the area a meticulous use of the sanative pair system would constitute the best option to delay as much as possible the spread of chemoresistance till complete eradication of the disease by vector control operations.     

Climatic determinants of lowland rice development

Accurate modelling of plant development is the basis for any assessment of climate change impact on crop yields. Most rice models simulate development (phenology) based on temperature and photoperiod, but often the reliability of these models is reduced beyond the environment they were calibrated for. In our study, we tested the effects of relative air humidity and solar radiation on leaf appearance rate in greenhouse experiments and analysed data sets from field studies conducted in two extremely different rice-growing environments in Nepal and Senegal. We also analysed environmental effects on duration to flowering of one popular IRRI material (IR64) for eight different sites covering the entire temperature range where rice is widely cultivated. Both low relative air humidity and low solar radiation significantly decreased leaf appearance rate. Mean air temperature explained 81% of the variation in duration to flowering across sites, which was furthermore significantly influenced by relative air humidity. Across all sites, a simple linear regression approach including mean air temperature and mean relative humidity in the calculation of duration to flowering led to a root mean square error (RMSE) of 10 days, which was slightly lower than the RMSE of 11 days achieved with an automated calibration tool for parameter optimization of cardinal temperatures and photoperiod sensitivity. Parameter optimization for individual sites led to a much smaller prediction error, but also to large differences in cardinal temperatures between sites, mainly lower optimum temperatures for the cooler sites. To increase the predictive power of phenological models outside their calibration range and especially in climate change scenarios, a more mechanistic modelling approach is needed. A starting point could be including relative air humidity and radiation in the simulation procedure of crop development, and presumably, a closer link between growth and development procedures could help to increase the robustness of phenological models.     

On the origin of leprosy

Leprosy, a chronic human disease with potentially debilitating neurological consequences, results from infection with Mycobacterium leprae. This unculturable pathogen has undergone extensive reductive evolution, with half of its genome now occupied by pseudogenes. Using comparative genomics, we demonstrated that all extant cases of leprosy are attributable to a single clone whose dissemination worldwide can be retraced from analysis of very rare single-nucleotide polymorphisms. The disease seems to have originated in Eastern Africa or the Near East and spread with successive human migrations. Europeans or North Africans introduced leprosy into West Africa and the Americas within the past 500 years.     

瑞典种猪的引进、饲养管理与繁殖性能观测

长白、大白、杜洛克三个种猪品种系从瑞典王国引进的优良种猪资源,经过精心饲养与管理,已表现出较强的适应性和优良的繁育性能.     

New quantitative trait loci for enhancing adaptation to salinity in rice from Hasawi,a Saudi landrace into three African cultivars at the reproductive stage

Salinity is a major constraint affecting rice productivity in rainfed and irrigated agro-ecosystems. Understanding salinity effects on rice production at the reproductive stage could improve adaptation for this trait. Identifying quantitative trait loci (QTLs) controlling adaptation to salinity may also accelerate breeding rice germplasm for environments prone to this stress. We used the salt tolerant landrace ‘Hasawi’ as a donor parent to generate three F₂ offspring (consisting each of 500 individuals) with three African cultivars (‘NERICA-L-19’, ‘Sahel 108’ and ‘BG90-2’) used as recipient parents (RP). The F₂s and F_2:3s were evaluated for grain yield and other traits in saline fields. Salinity caused reduction in all measured traits across the F₂-derived offspring, e.g. grain yield reduced between 65 and 73 %, but some offspring had twice the RP’s grain yield. QTL analysis revealed 75 QTLs for different traits in all 3 genetic backgrounds (GBs): 24 of them were common among all the 3 GBs while 31 were noted in 2 GBs, and 17 in one GB. ‘Hasawi’ contributed on average 49 % alleles to these QTLs. Two yield and yield related QTLs (qGY11 and qTN11) common in all 3 GBs were mapped on the same chromosomal segment suggesting these QTLs might be stable across different GBs. Four other QTLs were strongly associated with salinity tolerance with peak marker RM419, representing a potential candidate for MAS due to high LOD score and relatively large effect QTLs.     

Genetic diversity,population structure and differentiation of rice species from Niger and their potential for rice genetic resources conservation and enhancement

Rice genetic resources conservation and evaluation is crucial to ensure germplasm sources for further crop breeding. We conducted a wide collection of Oryza species in Niger and characterize its diversity with microsatellites (or simple sequence repeats, SSR). The aims of this research were to get a better understanding of the extent of genetic diversity, its structure and partition within rice eco-geographical zones of Niger. There were 264 accessions found in farmers’ and other fields: 173 O. sativa (Asia’s rice), 65 O. glaberrima (Africa’s rice), 25 O. barthii, and 1 O. longistaminata (weedy perennial rice), which were genotyped with 18 SSR. A total of 178 alleles were detected, with a mean of 9.89 alleles per locus. The polymorphism information content was 0.65 and heterozygosity was estimated as 0.14. Two main well-differentiate genotypic groups, which correspond to Asian and African rice species, were identified. The SSR set divided the Asia’s rice group (solely indica) into irrigated and floating rice, with rainfed lowland rice in between. The African rice species group was composed of O. glaberrima, O. longistaminata and O. barthii accessions, but without any clear genetic differentiation among them likely due admixtures within the samples of O. barthii. Five accessions that could be natural interspecific hybrids were too admixed for assigning them to any of the two well-differentiated groups. The partitioning of the overall diversity showed that maximum variation was within genotypic groups and subgroups or cropping ecologies, rather than between eco-geographical zones. The eco-geographical distribution of the diversity suggests germplasm exchange in Niger. Next-steps for conserving rice and crop wild relatives in Niger could be taken using the findings of this research.     

Rice yield gaps in irrigated systems along an agro‐ecological gradient in West Africa

Irrigated rice (Oryza sativa L.) in West Africa covers about 12 % of the regional rice‐growing area, and is produced all along the agro‐ecological gradient from the forest zone to the Sahara desert margins. Spatial and temporal variability of yield gaps (i.e., difference between actual and potential yield) were determined to set priorities for research and target technologies. On‐farm trials were conducted on 191 irrigated lowland fields in the humid forest, the savanna and the Sahel. Farmers' yields were compared with those of super‐imposed treatments of improved fertilization and weed management. Farmers' yields varied between 0.2 and 8.7 Mg ha^‐1, with average yields of 3.4 Mg ha^‐1 (Guinea savanna), 3.6 Mg ha^‐1 (humid forest), 3.9 Mg ha^‐1 (Sahel), and 5.1 Mg ha^‐1 (Sudan savanna). Simulated potential yields increased from 7 Mg ha^‐1 in the forest to about 10 Mg ha^‐1 in the Sahel. Accordingly, yield gaps were large, ranging from 3.2 to 5.9 Mg ha^‐1. Researcher weed control in the Sahel gave grain yield increases of about 1.0 Mg ha^‐1. Improved weed and N fertilization management increased yields by 1 to 2 Mg ha^‐1 in the forest and Guinea savanna sites. A share of 57‐80 % of the yield gap could not be accounted for. Improving weed control is likely to have the highest pay‐off in the Sahel while improved management of fertilizer N will be most beneficial in the forest and savanna environments.