Water use of rice and mung bean cultivations in a downstream area of an irrigation system in South Sulawesi in the 2nd dry season

Paddy and Water Environment - This paper revealed the irrigation rate by groundwater, evapotranspiration (ET), total water balance and yield in the experimental rice and mung bean fields in a...     

Injection and sampling methods for drug residue study in calf muscle

Eight calves, weighing 50-150 kg, were given intramuscularly 5 ml of ampicillin (ABPC) aqueous suspensions (200 mg potency/ml) in their right and left gluteal and femoral regions. All calves were sacrificed one hour later to confirm the location of injected drug. The drug was found in a muscle layer when injected with a needle 15 mm long to the following positions, 1. the midpoint between the central position of the gluteal region (CG) and the tuber coxae (M-CTc), 2. the midpoint between CG and the tuber ossis ischii (M-CTo), 3. the central position of M. semimembranaceus in the femoral region (CF). Seven calves, weighing 130-150 kg, were given intramuscularly 5 ml of ABPC suspensions at M-CTo and CF and sacrificed one hour (4 calves) and 3 days (3 calves) later. ABPC diffused along the long axis of the muscle fibers but not to the radial direction. ABPC was detected only in the injected muscle layer even after 3 days indicating that the drug did not diffuse to the neighboring muscles. In the injected muscle layer, concentration of ABPC was remarkably different from part to part. From these results, sampling of the injected muscle for the drug residue study was proposed as follows: 1. isolate about 100 g of muscle just under the stick point marked on the skin considering the direction of drug diffusion, and 2. isolate separately about 200 g of the surrounding muscle to confirm if the sampling is appropriate.     

Juvocimenes: potent juvenile hormone mimics from sweet basil

Two compounds with highly potent juvenile hormone activity were isolated and identified from the oil of sweet basil, Ocimum basilicum L., Labiatae.     

Identification of the core rumen bacterial taxa and their population dynamics during the fattening period in Japanese Black cattle

The rumen microbiota comprises a vast range of bacterial taxa, which may affect the production of high-quality meat in Japanese Black cattle. The aim of this study was to identify core rumen microbiota in rumen fluid samples collected from 74 Japanese Black cattle raised under different dietary conditions using 16S rRNA gene amplicon sequencing. In the rumen of fattening Japanese Black cattle, 10 bacterial taxa, showing >1% average relative abundance and >95% prevalence, irrespective of the dietary conditions and the fattening periods, were identified as the core rumen bacterial taxa, which accounted for approximately 80% of the rumen microbiota in Japanese Black cattle. Additionally, population dynamics of the core rumen bacterial taxa revealed two distinct patterns: Prevotella spp. and unclassified Bacteroidales decreased in the mid-fattening period, whereas unclassified Clostridiales, unclassified Ruminococcaceae, Ruminococcus spp., and unclassified Christensenellaceae increased during the same period. Therefore, the present study reports the wide distribution of the core rumen bacterial taxa in Japanese Black cattle, and the complementary nature of the population dynamics of these core taxa, which may ensure stable rumen fermentation during the fattening period.     

Effects of atelocollagen gel containing bone marrow-derived stromal cells on repair of osteochondral defect in a dog

To clarify the contribution of autologous transplantation of mesenchymal stromal cells (MSCs), an atelocollagen gel containing or not containing fluorescently-labeled canine MSCs was transplanted into an osteochondral defect which did not repair spontaneously and the histological repair of the defect was compared. Although an early repair of the cartilage was not observed in either defect, the reproduction of subchondral bone was remarkable in the MSCs-implanted defect. Moreover, in 2 weeks after operation, the implanted MSCs were located in the deeper regions of the defect, suggesting the differentiation of osteoblasts. There was a possibility that the movement of the implanted MSCs was due to an increase in intra-articular pressure from postoperative inflammation.     

Metabarcoding of feces and intestinal contents to determine carnivorous diets in red-crowned cranes in eastern Hokkaido,Japan

The red-crowned crane Grus japonensis in Hokkaido, Japan forms a closed population as a residence that is independent of the mainland population. Based on observations of a limited number of individuals as well as cranes in captivity, red-crowned cranes are omnivores and eat fish, worms, insects and plants in their own territories except in winter, when they are fed with dent corn that is supplied in eastern Hokkaido. DNA metabarcoding based on high throughput sequencing was carried out using universal primer sets for cytochrome oxidase subunit I gene. Feces from 27 chicks collected in June and July in the period from 2016 to 2018 and intestinal contents from 33 adult and subadult cranes that were found dead almost throughout year in 2006–2013 in the field in eastern Hokkaido were used. Although compositions varied considerably in the cranes, both insects and fish were found in adults and subadults to the same extents, while insects were predominant in chicks. Both insects and fish were detected in all seasons for adults and subadults. Horse flies, scarab beetles and weevils accounted for the most of the insects regardless of the life stage. Dace, stickleback, flatfish and sculpin were the major fish species in adults, while chicks ate almost only stickleback. The results provide the first comprehensive data on carnivorous diets in wild red-crowned cranes in eastern Hokkaido as basis for conservation of red-crowned cranes, for which the life style and area continue to change.     

Incorporating spatial autocorrelation into the general linear model with an application to the yellowfin tuna (Thunnus albacares) longline CPUE data

Catch-per-unit-effort (CPUE) data have often been used to obtain a relative index of the abundance of a fish stock by standardizing nominal CPUE using various statistical methods. The theory underlying most of these methods assumes the independence of the observed CPUEs. This assumption is invalid for a fish population because of their spatial autocorrelation. To overcome this problem, we incorporated spatial autocorrelation into the standard general linear model (GLM). We also incorporated into it a habitat-based model (HBM), to reflect, more effectively, the vertical distributions of tuna. As a case study, we fitted both the standard-GLM and spatial-GLM (with or without HBM) to the yellowfin tuna CPUE data of the Japanese longline fisheries in the Indian Ocean. Four distance models (Gaussian, exponential, linear and spherical) were examined for spatial autocorrelation. We found that the spatial-GLMs always produced the best goodness-of-fit to the data and gave more realistic estimates of the variances of the parameters, and that HBM-based GLMs always produced better goodness-of-fit to the data than those without. Of the four distance models, the Gaussian model performed the best. The point estimates of the relative indices of the abundance of yellowfin tuna differed slightly between standard and spatial GLMs, while their 95% confidence intervals from the spatial-GLMs were larger than those from the standard-GLM. Therefore, spatial-GLMs yield more robust estimates of the relative indices of the abundance of yellowfin tuna, especially when the nominal CPUEs are strongly spatially autocorrelated.