Diversity and function of decomposer fungi from a grassland soil

Despite the substantial interest to ecologists of the relationship between species diversity and ecosystem functioning, little is known about how the high species richness of decomposer (saprotrophic) fungi and their relative frequencies of occurrence influence the decomposition of organic matter. Three experiments were conducted to test the ability of culturable saprotrophic fungal isolates to utilise a range of artificial and more natural substrates that occur in organic matter, with the aims of (1) characterising the functional potential of ‘common’ and ‘occasional’ taxa in an upland grassland soil and (2) determining whether there was a high degree of apparent functional redundancy in these communities. ‘Function’ was defined as the ability of a fungal isolate to utilise broad categories of substrates (e.g. sugars, cellulose, lignin) that occur in organic matter and which change in proportion during decomposition. The terms ‘common/abundant/frequent’ and ‘occasional/infrequent’ usually referred here to the frequencies of occurrence of taxa estimated using Warcup soil plates. Accepting the difficulties of sampling fungi in soil, this appeared to be the most useful isolation method to produce a general picture of the microfungal community with an estimate of frequency of occurrence for every taxon obtained, and to provide cultures for use in function tests. The influence of this technique on the interpretation of the results is discussed.Forty-eight fungal isolates, obtained from an upland grassland in Roxburghshire, UK, were selected to cover the most ‘abundant’ taxa and a range of ‘occasionals’. Pure cultures of anamorphic fungi and members of the Zygomycota, Ascomycota and Basidiomycota were tested. Although there was apparently a high degree of functional redundancy (equivalence) in assemblages of culturable decomposer fungi, with ‘frequent’ and ‘infrequent’ taxa largely utilising the same substrates, the ‘infrequent’ taxa played important roles in decomposition. ‘Infrequent’ microfungi tested were potentially more active in decomposition than the ‘frequent’ taxa, i.e. several had a higher overall activity, were able to utilise a wider range of substrates and were more combative than the ‘abundant’ taxa. When ‘abundant’ and ‘occasional’ taxa from the same putative guild were inoculated together on grass litter, there was slight evidence of ‘positive’ indirect effects on decomposition and cellulose degradation. Some ‘negative’ effects on lignin degradation, probably as a result of combat, were observed.It is possible that the ‘occasional’ taxa increased the temporal resilience of the ecosystem process of decomposition, and were ‘waiting in the wings’ to replace the abundant taxa. Nevertheless, greater functional diversity could be associated with the uncultured taxa not studied here.     

Rapid diversity and abundance decline in a Caribbean coral reef sponge community

Sponges are abundant and diverse on coral reefs, and play key functional roles; but virtually nothing is known of their dynamics. This is the first report of coral reef sponge community dynamics documented by a series of censuses in which volume and species of every individual were recorded. At the start of the 14 year study, there were 1395 sponge individuals, representing 39 species in nine orders, and a total sponge volume of 33,721 cm³ in the censused area of a shallow Caribbean reef in San Blas, Panama. The most striking results of the 5 censuses were steady disappearance of species (51.3%) throughout the study period, and a steep drop in total sponge volume (42.6%). Species in keratose orders and with massive growth forms were lost disproportionately. Sponge losses could not be attributed to predators, physical disturbance (including a hurricane), extreme episodes of other abiotic factors, or disproportionately great loss of rare species due to random fluctuations. Disease may have played a role.High loss rates documented at this and nearby sites could be a local phenomenon, but scattered reports of disease and mass mortality of sponges from other sites suggest these data may reflect region-wide losses. Monitoring programs designed for corals and mobile unitary organisms can miss changes in sponges because very high sponge species diversity, facile fragmentation and fusion, and quick and complete disappearance of dead sponges, impedes perception of changes if there are no prior censuses. Whether or not sponge declines are extensive will remain unknown until repeat censuses have been accomplished at additional sites. Sponges can increase water clarity, bind live corals to the reef frame, and facilitate reef regeneration, suggesting that loss of sponges could accelerate declines of coral reefs.     

Exact-Permutation-Based Sign Tests for Clustered Binary Data Via Weighted and Unweighted Test Statistics

Clustered binary data occur frequently in many application areas. When analyzing data of this form, ignoring key features, such as the intracluster correlation, may lead to inaccurate inference, e.g., inflated Type I error rates. For clustered binary data, Gerard and Schucany (Comput Stat Data Anal 51:4622–4632, 2007) proposed an exact test for examining whether the marginal probability of a response differs from 0.5, which is the null hypothesis considered in the classic sign test. This new test maintains the specified Type I error rate and has more power, when compared to both the classic sign and permutation tests. The test statistic proposed by these authors equally weights the observed data from each cluster, regardless of whether the clusters are of equal size. To further improve the performance of the Gerard and Schucany test, a weighted test statistic is proposed and two weighting schemes are investigated. Seeking to further improve the performance of the proposed test, empirical Bayes estimates of the cluster-level success probabilities are utilized. These adaptations lead to 5 new tests, each of which are shown through simulation studies to be superior to the Gerard and Schucany (Comput Stat Data Anal 51:4622–4632, 2007) test. The proposed tests are further illustrated using data from a chemical repellency trial.