Cohort‐specific variation in juvenile coho salmon habitat use

In this study, we examined summer and fall freshwater rearing habitat use by juvenile coho salmon (Oncorhynchus kisutch) in the quickly urbanising Big Lake drainage in south‐central Alaska. Habitat use was assessed by regressing fish count data against habitat survey information across thirty study sites using generalised linear mixed models. Habitat associations were examined by age‐0 and age‐1+ cohorts separately, providing an opportunity to compare habitat use across different juvenile coho salmon life stages during freshwater rearing. Regression results indicated that the age‐0 cohorts were strongly associated with shallow, wide stream reaches with in‐stream vegetation, whereas age‐1+ cohorts were associated with deeper stream reaches. Furthermore, associations between fork length and habitat characteristics suggest cohort‐specific habitat use patterns are distinct from those attributable to fish size. Habitat use information generated from this study is being used to guide optimal fish passage restoration planning in the Big Lake drainage. Evidence for habitat use partitioning by age cohort during freshwater juvenile rearing indicates that pooling age cohorts into a single “juvenile” stage for the purposes of watershed management may mask important habitat use dynamics.     

Molecular characterization of Ascaridia galli from Bangladesh and development of a PCR method for distinguishing A. galli from Heterakis spp.

We analyzed the nuclear ribosomal internal transcribed spacer (ITS) 1 and ITS2 sequences for Bangladesh isolates of Ascaridia galli, and we determined that the sequences were unreliable as molecular markers for distinguishing A. galli from other Ascaridia species, because the sequences showed high identity with that of A. columbae. However, the ITS1 sequences were available for designing PCR primers distinguishable between Ascaridia galli and Heterakis spp. Bangladesh isolates of A. galli constituted a monophyletic clade along with other geographical isolates in the cytochrome c oxidase subunit I (COI) phylogenetic tree, however, we could not clarify the phylogenetic relationships between A. galli and other Ascaridia spp., because their available sequences in GenBank were very few. The developed PCR method using DNA from A. galli and Heterakis spp. eggs would enable differential diagnosis of the individual infections in the future.     

Construction of Genetic Linkage Map of Bread Wheat （Triticum aestivum L.） Using an Intervarietal Cross and QTL Map for Spike Related Traits

Most often a genetic linkage map is prepared using populations obtained from two highly diverse genotypes. However, the markers from such a map may not be useful in a breeding program as these markers may not be polymorphic among the varieties used in breeding. For the past nine years, intraspecific maps have been gaining importance and such maps based on Swiss （PaiUard et al., 2003）, Japanese （Suenaga et al., 2005）, Australian （Chaimcrs et al., 2001） wheat varieties arc available. A map based on Indian wheat varieties however has not been reported. We constructed a genetic linkage map based on a cross between two Indian bread wheat （Triticum aestivum L.） varieties, Sonalika and Kalyansona. One hundred and fifty F2 individuals were analyzed for arbitrarilyprimed polymerase Chain reaction （AP-PCR）, random amplified polymorphic DNA （RAPD）, inter simple sequence repeats （ISSR）, Sequence Tagged Microsatelhte Sites （STMS）, Amplified Fragment Length Polymorphism （AFLP） markers, seed storage proteins and known genes. A linkage map was constructed consisting of 236 markers and spanning a distance of 3 639 cM with 1 211.2 cM for A genome, 1 669.2 cM for B genome, 192.4 cM for D genome and 566.2 cM for unassigned groups,     

Nitrous oxide emission measurement with acetylene inhibition method in paddy fields under flood conditions

Nitrous oxide (N₂O) emission from flooded rice paddy fields was continuously measured by the closed chamber method at an experimental plot in Thailand for a whole cultivation period. To characterize the N₂O emission with regard to the denitrification N loss, the C₂H₂ inhibition method was applied. Flood water on the soil greatly suppressed the N₂O emission. The N₂O emission was mitigated considerably by even a thin film of the flood water. The overall average N₂O emissions under flood conditions for one crop season (83 days) at the control site and the C₂H₂ treated site were 10.3 and 11.8 μg N m⁻² h⁻¹, respectively. The N₂O emission from the C₂H₂ treated site was consistently higher than that from the control site and the N₂O emission from both sites followed the same diurnal and seasonal variation pattern, indicating the effect of denitrification inhibition by the supplied C₂H₂. The N₂O emission enhanced along with temperature increase when NO₃–N concentration in the soil water was above 0.4 mg N l⁻¹ and soil temperature was above 24°C, suggesting specific temperature influence over the emission. The increase in NO₃–N concentration and temperature in the soil affected only the N₂O emission while the difference in the emission at the C₂H₂ treated site and the control site was not so much affected. It was suggested that most of the actively produced N₂O under higher NO₃–N concentration and temperature would likely to quickly emit to the atmosphere rather than to undergo further reduction to N₂.     

Detection efficiency and habitat use to inform inventory and monitoring efforts: juvenile coho salmon in the Knik River basin,Alaska

Imperfect detection associated with sampling gear presents challenges for wildlife inventory and monitoring efforts. We examined occupancy dynamics and habitat use of juvenile coho salmon, Oncorhynchus kisutch, in shallow lake environments over a summer and early fall season in the Knik River area of south central Alaska using models which control for and estimate sampling gear detection efficiency. In addition, we present statements for the probability that observed absences at a survey site or from a survey area (a collection of sites) are true absences given some amount of sampling effort and analysts' beliefs about site occupancy and sampling gear detection efficiency which can be used to guide inventory and monitoring efforts for juvenile salmon or other wildlife and plant species. Occupancy modelling results demonstrate that minnow traps were effective at sampling juvenile coho in shallow lake environments, with a mean probability of detection across the study period of 0.68 (i.e., probability of detecting the presence of juvenile coho given that they are present at a trap site; SE = 0.03). Juvenile coho salmon migrated into shallow water lakes in late summer and early fall, presumably to seek out overwinter habitat. N‐mixture modelling examination of habitat use demonstrated that once in shallow lake environments, juvenile coho were widely distributed across a range of microhabitats, with some evidence for preference for shallower depths and warmer water temperatures.     

Effect of pyrethroids on carbohydrate metabolic pathways in common carp,Cyprinus carpio

The activity levels of succinate dehydrogenase (SDH) and glucose‐6‐phosphate dehydrogenase (G6PD) were assessed in various tissues of Cyprinus carpio var communis which had been exposed to lethal concentrations of group‐II pyrethroids (deltamethrin, cypermethrin, fenvalerate and fluvalinate) for a period of 72 h. The results indicated a steady decrease in SDH activity with a concomitant increase in G6PD activity. The decreased SDH activity indicated inhibition of SDH at mitochondrial level and the increased G6PD activity an enhancement of an alternative pathway of carbohydrate metabolism, viz the hexose monophosphate shunt (HMP) or pentose phosphate pathway as a biochemical adaptation to overcome the toxic stress. © 2001 Society of Chemical Industry     

Insect growth inhibition,antifeedant and antifungal activity of compounds isolated/derived from Zingiber officinale Roscoe (ginger) rhizomes

Fresh rhizomes of Zingiber officinale (ginger), when subjected to steam distillation, yielded ginger oil in which curcumene was found to be the major constituent. The thermally labile zingiberene‐rich fraction was obtained from its diethyl ether extract. Column chromatography of ginger oleoresin furnished a fraction from which [6]‐gingerol was obtained by preparative TLC. Naturally occurring [6]‐dehydroshogaol was synthesised following condensation of dehydrozingerone with hexanal, whereas zingerone and 3‐hydroxy‐1‐(4‐hydroxy‐3‐methoxyphenyl)butane were obtained by hydrogenation of dehydrozingerone with 10% Pd/C. The structures of the compounds were established by ¹H NMR, ¹³C NMR and mass (EI‐MS and ES‐MS) spectral analysis. The test compounds exhibited moderate insect growth regulatory (IGR) and antifeedant activity against Spilosoma obliqua, and significant antifungal activity against Rhizoctonia solani. Among the various compounds, [6]‐dehydroshogaol exhibited maximum IGR activity (EC₅₀ 3.55 mg ml ^?1) while dehydrozingerone imparted maximum antifungal activity (EC₅₀ 86.49 mg litre^?1). © 2001 Society of Chemical Industry     

Subcutaneous pharmacokinetics and dosage regimen of cefotaxime in buffalo calves (Bubalus bubalis)

The pharmacokinetics and dosage regimen of cefotaxime following its single subcutaneous administration (10 mg/kg) were investigated in buffalo calves. Plasma and urine samples were collected over 10 and 24 h post administration, respectively. Cefotaxime in plasma and urine was estimated by microbiological assay technique using E. coli as test organism. The pharmacokinetic profiles fitted one-compartment open model. The peak plasma levels of cefotaxime were 6.48 ± 0.52 µg/ml at 30 min and the drug was detected upto 10 h. The absorption half-life and elimination half-life were 0.173 ± 0.033 h and 1.77 ± 0.02 h, respectively. The apparent volume of distribution and total body clearance were 1.17 ± 0.10 l/kg and 0.45 ± 0.03 l/kg/h, respectively. The urinary excretion of cefotaxime in 24 h, was 5.36 ± 1.19 percent of total administrated dose. A satisfactory subcutaneous dosage regimen for cefotaxime in buffalo calves would be 13 mg/kg repeated at 12 h intervals.     

Molecular characterization of the incitant of cowpea bacterial blight and pustule, Xanthomonas campestris pv. vignicola

Strains of Xanthomonas campestris pv. vignicola (Xcv), isolated from cowpea leaves with blight or minute pustules and collected from various geographic areas, were selected on the basis of pathological and physiological features. All strains were analyzed for genotypic markers by two methods: ribotyping with EcoRI endonuclease, and RFLP analysis with a plasmid probe (pthB) containing a gene required for pathogenicity from Xanthomonas campestris pv. manihotis. Ribotyping revealed a unique pattern for all the strains that corresponded to the previously described ribotype rRNA7. Based on polymorphism detected by pthB among Xcv strains, nine haplotypes were defined. The observed genetic variation was independent of the geographic origin of the strains and of pathogenic variation. Some haplotypes were widely distributed, whereas others were localized. In some cases, we could differentiate strains isolated from blight symptoms and pustules according to haplotypic composition. However, in most cases, no significant differences were observed. Our results and the previous pathogenic and biochemical characterizations suggest that the strains isolated from leaves with blight symptoms or minute pustules belong to the same pathovar. We provide information on pathogen diversity that can be used to identify and characterize resistant germplasm.     

Effect of Spirulina fusiformis on cyclophosphamide and mitomycin-C induced genotoxicity and oxidative stress in mice

Spirulina fusiformis was tested for its possible in vivo protective effects against cyclophosphamide (CP) and mitomycin-C (MMC) induced genotoxicity and oxidative stress in mice. Pre-treatment with S. fusiformis (250, 500 and 1000 mg kg(-1), p.o., daily for 5 days) significantly reduced the chromosomal damage and lipid peroxidation with concomitant changes in antioxidants and detoxification systems. All the three tested doses were effective in exerting a protective effect against CP and MMC.