A land suitability system for spate irrigation schemes in Eritrea

Abstract. Spate irrigation is a system used for wetting land prior to planting. Use is made of seasonal rivers (wadis) producing flash floods in the uplands, which are directed by structures to irrigate fields in the lowlands. A land suitability system for spate irrigation schemes in Eritrea was studied in the Sheeb area of Eritrea with and without land improvements. The availability of floods and soil moisture were the major land use requirements for spate-irrigated sorghum and maize, while salinity hazard has only a minor effect in spate irrigation systems. The suitable land for spate irrigation in the Sheeb area is distributed as follows: 16% is highly to moderately suitable, 24% is moderately suitable and 17% is marginally suitable. About 40% of the study area was found to be currently unsuitable for spate irrigation mainly due to a lack of floodwater and poor soils. With improvements to the spate irrigation system, such as construction of permanent flood diversion structures, the area of land suitable for spate irrigation will expand. The land suitability system presented in this study could be applied in other spate irrigation schemes of Eritrea and perhaps in other countries also.     

Lipid-soluble antioxidants status and some of its socio-economic determinants among pregnant Ethiopians at the third trimester

OBJECTIVE: To determine the serum levels of three lipid-soluble antioxidants (retinol, beta-carotene and alpha-tocopherol) in pregnant women attending an antenatal clinic (ANC) in Gondar, Ethiopia. DESIGN: A cross-sectional study involving laboratory determination of serum levels of retinol, alpha-tocopherol and beta-carotene using high-performance liquid chromatography and questionnaire-based assessment of socio-economic status. SETTING: ANC of a university teaching hospital. SUBJECTS: Three hundred and twenty-two healthy pregnant women in their third trimester, who attended the ANC. RESULTS: Mean serum levels of retinol, alpha-tocopherol and beta-carotene were found to be 1.23+/-0.5, 25.5+/-0.9 and 0.21+/-0.09 micromol l(-1), respectively. The prevalence of vitamin A deficiency (<1.05 micromol l(-1)) among pregnant women was 38.5%. Women having low retinol (vitamin A) levels were highly likely to live in earth-floored and mud-walled houses, and less likely to own a house and to have a latrine. CONCLUSION: The study shows that serum levels of lipid-soluble antioxidants were low among ANC attendees in northern Ethiopia. It also indicates that some socio-economic factors (such as poor housing standard) are associated with vitamin A deficiency.     

Characterization of fungi (Fusarium and Rhizoctonia) and oomycetes (Phytophthora and Pythium) associated with apple orchards in South Africa

Several species of fungi and oomycetes including Fusarium, Rhizoctonia, Phytophthora and Pythium have been reported as root pathogens of apple where they contribute to a phenomenon known as apple replant disease. In South Africa, little is known about specific species in these genera and their pathogenicity toward apple. Therefore, these aspects were investigated along with the development and optimization of qPCR tests for detection and quantification of the most virulent oomycete species. In eight investigated orchards, the oomycete Phythophthora cactorum was widely distributed, while nine Pythium species were differentially distributed among the orchards. Pythium irregulare was the most widely distributed and the most virulent species along with P. sylvaticum, P. vexans and Ph. cactorum. Seven binucleate Rhizoctonia anastomosis groups (AGs) were also differentially distributed among the orchards, with the majority appearing to be non-pathogenic while certain AG-I and AG-F isolates exhibited low virulence on apple. In the genus Fusarium, F. oxysporum was widely distributed, but isolates were non-pathogenic. Fusarium solani and F. avenaceum were less frequently encountered, with only some isolates having low virulence. qPCR data obtained from seedling roots inoculated with the most virulent Pythium species (P. irregulare, P. sylvaticum and P. vexans) and the genus Phytophthora were not always reproducible between trials, or isolates of the same species. In general, seedling growth inhibition was associated with the presence of a low amount of pathogen DNA (±40 fg μl⁻¹ to 2 pg μl⁻¹) in roots. Pythium irregulare, although having the lowest DNA concentrations in roots, was the only species for which a significant negative correlation was found between seedling weight and pathogen DNA concentration.     

<Emphasis Type="Italic">Cylindrocarpon</Emphasis> species associated with apple tree roots in South Africa and their quantification using real-time PCR

Cylindrocarpon species are known to be a component of the pathogen/pest complex that incites apple replant disease. In South Africa, no information is available on apple associated Cylindrocarpon species and their pathogenicity. Therefore, these aspects were investigated. Among the isolates recovered from apple roots in South Africa, four species (C. destructans, C. liriodendri, C. macrodidymum and C. pauciseptatum) were identified using β-tubulin gene sequencing and phylogenetic analysis. This is the first report of C. liriodendri, C. macrodidymum and C. pauciseptatum on apple trees. Cylindrocarpon macrodidymum was the most prevalent. Isolates within each of the four species were pathogenic towards apple seedlings, but varied in their virulence. With a single exception, all isolates were able to induce lesion development on seedling roots. Only 57% of the isolates, which represented all four species, were able to cause a significant reduction in seedling weight and/or height. The greatest seedling growth reductions were caused by two isolates of C. destructans, and one isolate each of C. liriodendri and C. macrodidymum. A quantitative real-time polymerase chain reaction (qPCR) method was developed for simultaneous detection of all four Cylindrocarpon species. qPCR analyses of Cylindrocarpon from the roots of inoculated seedlings showed that the amount of Cylindrocarpon DNA in roots was not correlated to seedling growth reductions (weight and height) or root rot. The qPCR method is, however, very useful for the rapid identification of apple associated Cylindrocarpon species in roots. The technique may also hold potential for being indicative of Cylindrocarpon disease potential if rhizosphere soil rather than roots are used.     

Effect of forest fragmentation on fruit and seed predation of the tropical dry forest tree Ceiba aesculifolia

Forests fragmentation reduces the density of natural plant populations forming patches of the remaining individuals. One of the biotic interactions that can be affected by forest fragmentation and is poorly studied is seed predation. We determined the effects of forest fragmentation on seed and fruit predation in Ceiba aesculifolia by comparing trees in continuous forest with trees in fragmented forest. We compared the following variables: (a) frequency of fruit predation by Collie’s squirrel (Sciurus colliaei) in each habitat; (b) frequency of the cotton-staining bug seed predator (Dysdercus, Orden Hemiptera) in each habitat; (c) the effect of seed predation on germination frequency and time; and (d) the effect of different life stages of Dysdercus on seed viability. In continuous habitat, 100% of the trees presented fruits with squirrel predation while only 34% of trees in fragmented habitats presented fruit predation. In continuous forest 27% of the trees contained fruits with the seed predator Dysdercus, while only 2% of the trees in fragmented forest presented Dysdercus. The initial weight of damaged seeds was greater than seeds that were not damaged indicating that seed predators select heavier seeds to feed upon. Frequency of seed germination was affected by different life stages; pre-adults decreased germination significantly more than nymphs and adults. Seed predation significantly increased the time it took for germination to occur. Our study shows that forest fragmentation significantly affects predation patterns of squirrels and cotton-staining bugs. Reduction of natural seed predators in forest fragments may have long-term consequences on forest structure and diversity.     

Effects of zinc on tissue uptake and toxicity of lead in Sprague Dawley rat

Lead (Pb) exposure occurs together with other metals including zinc (Zn). This study investigated the impact of Zn on Pb tissue accumulation and Pb-induced toxicities. Animals (n=6 rats per group) were exposed to lead acetate (PbAc) or a combination of PbAc and zinc acetate (ZnAc) under the following groups: control (deionized water), low PbAc [12 mg/kg PbAc (3 mg PbAc/rat/day)], low PbAc–ZnAc [12 mg/kg PbAc (3 mg PbAc/rat/day) + 0.2 mg ZnAc/rat/48 hr], high PbAc [120 mg/kg (30 mg PbAc/rat/day)], and high PbAc–ZnAc [120 mg/kg (30 mg PbAc/rat/day) + 1 mg ZnAc/rat/48 hr] for 8 weeks. A significant reduction in body weight gain was observed in the high PbAc group relative to the control group. Muscles and testes both had reduced and increased Pb uptake in low PbAc–ZnAc and high PbAc–ZnAc groups compared to PbAc only groups, respectively. Bone Pb levels in the high PbAc–ZnAc group were lower than the high PbAc group. Zinc co-administration attenuated Pb-induced inhibition of delta aminolaevulinic acid dehydratase enzyme and enhanced catalase enzyme activity at a high level of exposure. Moreover, ZnAc seems to have minimized the effects of Pb-induced mRNA dysregulation in antioxidant and antiapoptotic enzymes encoding genes. Heme oxygenase-1 was downregulated in the kidney and brain in the low PbAc group. Liver glutathione peroxidase and thioredoxin reductase-1 were downregulated in the high PbAc group. These findings suggest that zinc co-administration with lead may partially mitigate against Pb-induced toxicities.     

Evaluation of bread wheat (Triticum aestivum L.) genotypes for yield and related traits under drought stress conditions

ABSTRACT

Drought is a major factor threatening crop production worldwide. Developing wheat varieties that are adapted to drought prone environments is a sustainable strategy to improve wheat production and productivity. The aim of this study was to evaluate and select bread wheat genotypes for yield and yield components, and for stability under drought stress and non-stress conditions. One hundred and twenty genotypes were evaluated at five test sites in the 2018/19 cropping season using a 10 x 12 alpha lattice design with two replicates. The level of drought stress was imposed using different sowing dates (early planting representing non-stressed, while late planting as drought stressed conditions) following the onset of the main rain at each site. Grain yield and yield components were recorded, and drought indices were calculated for each genotype. Among the drought tolerance indices, GMP, MP, HM, STI and YI were found to be the most suitable for predicting drought tolerance because they had significant and positive correlations with yield under drought stress and non-stress conditions. Rank sum analysis identified the most drought tolerant genotypes as ‘YS-34', ‘YS-85' and ‘YS-82’. The selected wheat genotypes are useful genetic resources for future drought tolerance breeding programmes in Ethiopia or similar agro-ecologies.     

Characteristics of cytochrome P450-dependent metabolism in the liver of the wild raccoon,Procyon lotor

Wildlife is exposed to a wide range of xenobiotics in the natural environment. In order to appropriately assess xenobiotic-induced toxicity in wildlife, it is necessary to understand metabolic capacities. Carnivores, in general, have low metabolic abilities, making them vulnerable to a variety of chemicals. Raccoons (Procyon lotor) in the wild have been found to have high levels of xenobiotics. However, little is known about the metabolic capacity of the cytochrome P450 (CYP) enzymes in this species. Thus, this study used liver samples to investigate the characteristics of CYP enzymes in wild raccoons. In 22 wild raccoons, CYP concentrations in hepatic microsomes were examined. To better understand the properties of CYP-dependent metabolism, in vitro metabolic activity studies were performed using ethoxyresorufin, pentoxyresorufin and testosterone as substrates. In addition, three raccoons were fed commercial dog food in the laboratory for one week, and the effects on CYP-dependent metabolism were investigated. In comparison to other mammalian species, raccoons had very low concentrations of CYP in their livers. In an in vitro enzymatic analysis, raccoons’ ethoxyresorufin O-deethylase (EROD) and pentoxyresorufin O-depentylase (PROD) metabolic capacities were less than one-fifth and one-tenth of rats’, respectively. These results indicate the possible high risk in raccoons if exposed to high levels of environmental xenobiotics because of their poor CYP activity. In this study, the features of CYP-dependent metabolism in wild raccoons are described for the first time.     

Effect of cropping system on composition of the <Emphasis Type="Italic">Rhizoctonia</Emphasis> populations recovered from canola and lupin in a winter rainfall region of South Africa

Rhizoctonia spp. anastomosis groups (AGs) associated with canola and lupin in the southern and western production areas of the Western Cape province of South Africa were recovered during the 2006 and 2007 growing seasons and identified using sequence analyses of the rDNA internal transcribed spacer regions. The effect of crop rotation systems and tillage practices on the recovery of Rhizoctonia spp. was evaluated at Tygerhoek (southern Cape, Riviersonderend) and Langgewens (western Cape, Moorreesburg) experimental farms. Isolations were conducted from canola planted after barley, medic/clover mixture and wheat, and lupin planted after barley and wheat, with sampling at the seedling, mid-season and seedpod growth stages. In the 2006 study, 93.5% of the Rhizoctonia isolates recovered were binucleate and 6.5% multinucleate; in 2007, 72.8% were binucleate and 27.2% were multinucleate. The most abundant AGs within the population recovered included A, Bo, I and K, among binucleate isolates and 2-1, 2-2 and 11 among multinucleate isolates. Crop rotation sequence, tillage and plant growth stage at sampling all affected the incidence of recovery of Rhizoctonia, but certain effects were site-specific. The binucleate group was more frequently isolated from lupin and the multinucleate group from canola. AG-2-1 was only isolated from canola and AG-11 only from lupin. This study showed that important Rhizoctonia AGs such as AG-2-1, 2-2 and 11 occur in both the southern and the western production areas of the Western Cape province and that crop rotation consistently influences the incidence and composition of the Rhizoctonia community recovered from the cropping system.     

A multi-phasic approach reveals that apple replant disease is caused by multiple biological agents, with some agents acting synergistically

Apple replant disease (ARD) has been reported from all major fruit-growing regions of the world, and is often caused by a consortium of biological agents. The aim of this study was to investigate the etiology of ARD in South Africa in six orchard soils, using a multiphasic approach under glasshouse conditions. This approach first involved determining the ARD status of the soils by monitoring apple seedling growth responses in non-treated soil versus growth in pasteurized soil, as well as in 15% non-treated soil that was diluted into pasteurized soil. Subsequently, the potential for specific organisms to function as causal agents of ARD was investigated using (i) biocide applications, (ii) quantitative real-time PCR (qPCR) analyses of ARD ‘marker’ microbes (Pythium irregulare, Pythium sylvaticum, Pythium ultimum, Pythium vexans, Rhizoctonia solani AG-5 and the genera Cylindrocarpon and Phytophthora), (iii) nematode analyses, (iv) isolation of actinomycetes and (v) pathogenicity testing of actinomycetes individually, and when co-inoculated with P. irregulare or Cylindrocarpon macrodidymum. The analyses showed that the soils could be grouped into low, moderate and severe ARD soils, with each group containing two soils. Several lines of evidence suggested that actinomycetes are not involved in ARD in South Africa. Multiple biological agents were determined to contribute to ARD including (i) oomycetes (Phytophthora and Pythium) that are important based upon their widespread occurrence, and the fact that metalaxyl application improved seedling growth in four soils (ii) the genus Cylindrocarpon that was also widespread, and for which a synergistic interaction with P. irregulare was demonstrated and (iii) occasionally parasitic nematodes, mainly Pratylenchus penetrans, Pratylenchus scribneri and Pratylenchus delattrei, since fenamiphos application improved seedling growth in two orchards. qPCR analyses of the ARD marker microbes showed that R. solani AG-5 is absent from South African orchards, and that P. ultimum is widespread, even though the latter species could not be detected in previous isolation studies. The other marker microbes were also widespread, with the exception of P. sylvaticum. qPCR quantification of the marker microbes could not be correlated with the severity of ARD in any manner. qPCR analyses did, however, show that possible root pruning pathogens such as P. irregulare, P. sylvaticum and P. ultimum had much lower DNA concentrations in seedling roots than P. vexans and the genera Cylindrocarpon and Phytophthora.