Détection moléculaire spécifique de la région vir du plasmide pTi d'Agrobacterium tumefaciens dans les sols et plants au Maroc

Le meilleur moyen de contrôle du crown gall ( Agrobacterium tumefaciens ) est la prévention et donc la détection de la bactérie pathogène dans les sols prévus pour les pépinières. Pour cela nous avons essayé une approche moléculaire utilisant la PCR pour caractériser le plasmide pTi par le couple des amorces spécifiques F14/F44 dans les sols de diverses régions marocaines. Cette technique de détection représente un indicateur potentiel d'avertissement sur l'état d'infection des sols et plants par A. tumefaciens qui permet ainsi de déclencher la lutte biologique par le NoGall, produit commercial australien, hébergeant l'antagoniste K₁₀₂₆.     

Chromosomal and Plasmid Diversity of Agrobacterium Strains Isolated from Ficus benjamina Tumors

Agrobacteria were previously isolated from tumors developing on branches and aerial and hypogeous roots of weeping fig plants in Italy and in The Netherlands. A representative group of 48 strains was analyzed by PCR–RFLP of 16S and 16S + IGS ribosomal regions, PCR–RFLP of six Ti plasmid (pTi) regions and characterized for plasmid content. Two groups of agrobacteria were separated by cluster analysis of PCR–RFLP profiles of rrs gene: seventeen strains were similar to the new species Agrobacterium larrymoorei, while the remaining strains were included within the agrobacterium biovar 1 group. Sixteen different plasmid profiles from one to five plasmids were observed. In addition, 21 ribotypes and 20 pTi structures were arranged in many different combinations, showing that fig agrobacteria were characterized by a wide heterogeneity. A general lack of correlation between strain ribotypes and plasmid content was observed.     

Correction to: Coupling landscape graph modeling and biological data: a review

Landscape Ecology - In the original publication of the article, the sixth author name has been misspelt. The correct name is given in this Correction. The original article has been corrected.     

Mutualism between euryhaline tilapia Sarotherodon melanotheron heudelotii and Chlorella sp.—Implications for nano-algal production in warmwater phytoplankton-based recirculating systems

The West-African euryhaline tilapia, Sarotherodon melanotheron heudelotii shift from visually feeding on zooplankton when juveniles to mostly filter feeding on phytoplankton when adults. When reared using an appropriate ration in intensive aquaculture systems, S. m. heudelotii also consume algal-based detritus, and contribute to sediment mineralization, clean up their environment, and ultimately stimulate and sustain algal growth. We analysed such practical advantages for phytoplankton-based recirculating systems, using S. m. heudelotii and Chlorella sp. as biological material originating from the prototype of such a system operated in Senegal. We performed a 24-h factorial design experiment in 36 tubs, cross-classifying three levels of S. m. heudelotii (fishless control, unfed fish, and fed fish) with four levels of Chlorella initial density.Chlorella overall mean density increased significantly from fishless, to unfed fish, and fed fish treatments, and with Chlorella initial density. S. m. heudelotii did not alter nitrogen nor phosphorus concentrations, only affected by algal initial densities. Most ammonia excreted by fish was probably uptaken by Chlorella. Bacteria-mediated diurnal nitrification was possibly an alternative ammonium loss mechanism at highest oxygen concentrations. Algae were not limited by nitrogen or phosphorus but most likely by low dissolved organic carbon availability. Chlorella differential responses with fed vs. unfed Sarotherodon suggest that CO₂ supplied by heterotrophic S. m. heudelotii respiration played a key role. Observed Chlorella growth rates were similar to the highest rates obtained in algal mass cultures, enriched with CO₂, nitrate and phosphate, under artificial lighting.Our results suggest the existence of a Sarotherodon-Chlorella mutualism in our systems, where S. m. heudelotii provide CO₂, the major limiting factor of Chlorella growth, whereas Chlorella oxygenate and detoxify the water media from ammonia, promoting S. m. heudelotii production. This mutualism could be used to optimize photosynthetic suspended-growth aquaculture systems, particularly in the Tropics where light is abundant and temperature is continuously high.     

Using unsupervised learning techniques to assess interactions among complex traits in soybeans

Soybean yield components and agronomic traits are connected through physiological pathways that impose tradeoffs through genetic and environmental constraints. Our primary aim is to assess the interdependence of soybean traits by using unsupervised machine learning techniques to divide phenotypic associations into environmental and genetic associations. This study was performed on large scale, jointly analyzing 14 quantitative traits in a large multi-parental population designed for genetic studies. We collected phenotypes from 2012 to 2015 from a soybean nested association panel with 40 families of approximately 140 individuals each. Pearson and Spearman correlations measured phenotypic associations. A multivariate mixed linear model provided genotypic and environmental correlations. To evaluate relationships among traits, the study used principal component and undirected graphical models from phenotypic, genotypic, and environmental correlation matrices. Results indicate that high phenotypic correlation occurs when traits display both genetic and environmental correlations. In genetic terms, length of reproductive period, node number, and canopy coverage play important roles in determining yield potential. Optimal grain yield production occurs when the growing environment favors faster canopy closure and extended reproductive length. Environmental associations found among yield components give insight into the nature of yield component compensation. The use of unsupervised learning methods provides a good framework for investigating interactions among various quantitative traits and defining target traits for breeding.     

Assessment of molecular detection of Fusarium circinatum in insects and passive spore traps in Pinus radiata plantations

Fusarium circinatum is the causal agent of pitch canker, a destructive disease that threatens natural and planted pine forests around the world. Although pitch canker has caused problems in Spain and Portugal, concerning Europe as a whole, the fungus is not established across the pine distribution area. Its dispersion by wind and/or insect vectors could nevertheless play a role in the colonization of currently uninfected stands. It is therefore crucial to develop monitoring tools for its detection. To this end, we assessed the molecular detection of the pathogen in environmental samples of bark beetles and passive spore traps, collected in two infected Pinus radiata plantations in Basque country, Spain. The spread pattern of F. circinatum was assessed by an experimental design that included insect and spore traps installed at the centre, at the edge and outside the plots. Our results showed that F. circinatum was detected in both types of samples, at almost all collection dates. In both type of samples, positive detections were mainly found at the centre of the plots, a lower proportion at the edge, and very few outside. This suggests that long‐distance dispersion of Fusarium circinatum does not rely on wind spore dispersal neither on insect flight. Our study also shows that molecular methods are a powerful tool to monitor the pathogen in environmental samples.     

Quantitative impact assessment of spray coverage and pest behavior on contact pesticide performance

BACKGROUND: Standard procedures for evaluation of pesticide performance do not take into account pest behavioral response or incomplete spray coverage. In this study, a series of laboratory experiments was conducted with two non‐systemic miticides (propargite and hexythiazox) applied to cotyledon cotton plants, which were subsequently infested with spider mites. The results of these laboratory experiments are discussed through a comprehensive pest population dynamics model. RESULTS: When cotton leaves were submerged in miticide solutions, both miticides provided effective control of spider mites. In a two‐choice test it was demonstrated that propargite was repellent to spider mites, but not hexythiazox. Finally, the spray coverage on cotton plants was varied, and, for both miticides, significantly positive relationships between spray coverage and spider mite mortality were shown. However, propargite required higher spray coverage (20%) than hexythiazox (10%) to control spider mites. A theoretical model showed that, without repellency, the pesticide performance is positively correlated with target pest mobility. If the pesticide is repellent, the probability of exposure decreases, especially for a less mobile pest. CONCLUSION: With an experimental and theoretical modeling approach, it was demonstrated how the combination of behavioral avoidance and low spray coverage can markedly reduce pesticide performance. Copyright © 2012 Society of Chemical Industry     

Optimizing aphid biocontrol with the predator Aphidoletes aphidimyza,based on biology and ecology

Aphidoletes aphidimyza is one of the most important predators used in the augmentative biological control of aphids, key pests of many crops worldwide. Adult females are very efficient in locating aphid infestations over a relatively long range, up to 45 m, and deposit eggs near or within aphid colonies. The predatory larvae are aphid generalists preying on several agriculturally important aphid species. The successful use of this biocontrol agent in agricultural systems depends on several biotic and abiotic factors. Among biotic factors, aphid species, plant structure, interspecific competition and intraguild predation may significantly impact the predator´s population dynamics. Key abiotic conditions include day lengths (above a critical threshold to prevent diapause), availability of mating sites in the crop, temperature (above 15 °C to enable egg laying), air relative humidity (above 70%) and availability of pupation sites. Although several successes have been reported in open field crops with naturally occurring or released populations, commercial releases are primarily used in protected crops. Optimized emergence boxes combining provisioning of food sources for the adults, integration with the technological advances that occurred in the greenhouse environment lately, insights into the nutritional ecology in open field crops and exploration of the genetic variability are proposed as future directions to improve adoption and efficacy of A. aphidimyza in crop protection. © 2018 Society of Chemical Industry     

Biscrolling nanotube sheets and functional guests into yarns

Multifunctional applications of textiles have been limited by the inability to spin important materials into yarns. Generically applicable methods are demonstrated for producing weavable yarns comprising up to 95 weight percent of otherwise unspinnable particulate or nanofiber powders that remain highly functional. Scrolled 50-nanometer-thick carbon nanotube sheets confine these powders in the galleries of irregular scroll sacks whose observed complex structures are related to twist-dependent extension of Archimedean spirals, Fermat spirals, or spiral pairs into scrolls. The strength and electronic connectivity of a small weight fraction of scrolled carbon nanotube sheet enables yarn weaving, sewing, knotting, braiding, and charge collection. This technology is used to make yarns of superconductors, lithium-ion battery materials, graphene ribbons, catalytic nanofibers for fuel cells, and titanium dioxide for photocatalysis.     

The Antinociceptive and Anti-Inflammatory Activities of Caulerpin,a Bisindole Alkaloid Isolated from Seaweeds of the Genus Caulerpa

The antinociceptive and anti-inflammatory activity of caulerpin was investigated. This bisindole alkaloid was isolated from the lipoid extract of Caulerpa racemosa and its structure was identified by spectroscopic methods, including IR and NMR techniques. The pharmacological assays used were the writhing and the hot plate tests, the formalin-induced pain, the capsaicin-induced ear edema and the carrageenan-induced peritonitis. Caulerpin was given orally at a concentration of 100 μmol/kg. In the abdominal constriction test caulerpin showed reduction in the acetic acid-induced nociception at 0.0945 μmol (0.0103–1.0984) and for dypirone it was 0.0426 μmol (0.0092–0.1972). In the hot plate test in vivo the inhibition of nociception by caulerpin (100 μmol/kg, p.o.) was also favorable. This result suggests that this compound exhibits a central activity, without changing the motor activity (seen in the rotarod test). Caulerpin (100 μmol/kg, p.o.) reduced the formalin effects in both phases by 35.4% and 45.6%, respectively. The possible anti-inflammatory activity observed in the second phase in the formalin test of caulerpin (100 μmol/kg, p.o.) was confirmed on the capsaicin-induced ear edema model, where an inhibition of 55.8% was presented. Indeed, it was also observed in the carrageenan-induced peritonitis that caulerpin (100 μmol/kg, p.o.) exhibited anti-inflammatory activity, reducing significantly the number of recruit cells by 48.3%. Pharmacological studies are continuing in order to characterize the mechanism(s) responsible for the antinociceptive and anti-inflammatory actions and also to identify other active principles present in Caulerpa racemosa.