Genome-wide association analysis for stripe rust resistance in spring wheat(Triticum aestivum L.) germplasm

Stripe rust is a continuous threat to wheat crop all over the world. It causes considerable yield losses in wheat crop every year. Continuous deployment of adult plant resistance(APR) genes in newly developing wheat cultivars is the most judicious strategy to combat this disease. Herein, we dissected the genetics underpinning stripe rust resistance in Pakistani wheat germplasm. An association panel of 94 spring wheat genotypes was phenotyped for two years to score the infestation of stripe rust on each accession and was scanned with 203 polymorphic SSRs. Based on D' measure, linkage disequilibrium(LD) exhibited between loci distant up to 45 c M. Marker-trait associations(MTAs) were determined using mixed linear model(MLM). Total 31 quantitative trait loci(QTLs) were observed on all 21 wheat chromosomes. Twelve QTLs were newly discovered as well as 19 QTLs and 35 previously reported Yr genes were validated in Pakistani wheat germplasm. The major QTLs were QYr.uaf.2 AL and QYr.uaf.3 BS(PVE, 11.9%). Dissection of genes from the newly observed QTLs can provide new APR genes to improve genetic resources for APR resistance in wheat crop.     

Simultaneous use of plant growth promoting rhizobacterium and nitrogenous fertilizers may help in promoting growth,yield, and nutritional quality of okra

This study was conducted to evaluate the simultaneous use of plant growth promoting rhizobacterium (QS1) and different combinations of urea-nitrogen and biogas slurry-nitrogen for improving growth, yield, and nutritional quality of field grown okra. The isolate QS1 was identified as Bacillus sp. QS1 based on its ribosomal ribonucleic acid (rRNA) sequence analysis. Results revealed that among the combinations, the application of 50% urea-nitrogen + 50% biogas slurry-nitrogen was optimal for improving crop performance. This combination significantly (p ≤ 0.05) promoted okra growth viz. plant height (69.63–80.03 cm), no of branches per plant (14–18), shoot fresh weight (86.66–136.25 g/plant), root fresh weight (22.5–26.58 g/plant), and fruit yield (8.5–13.5 kg/plot) compared to the plants receiving 100% urea-nitrogen. The interactive effective of this nitrogen combination and QS1 inoculation produced the highest growth and yield response. Similarly, the same treatment improved nitrogen, phosphorus, potassium, and protein contents in shoot and fruit of okra compared to other treatments.     

Thermal,swelling and stability kinetics of chitosan based semi-interpenetrating network hydrogels

The present study is focused on studying the swelling kinetics, thermal and aqueous stabilities, and determination of various forms of water in the chitosan (CS) and polyacrylonitrile (PAN) blend and semi-interpenetrating polymer network (sIPN). CS/PAN blend hydrogel films were prepared by solution casting technique. The blend film with optimum swelling properties was selected for the synthesis of sIPN. CS in the blend was crosslinked with the vapors of Glutaraldehyde (GTA) to prepare sIPN. The fabricated CS/PAN blend and sIPN hydrogels films were characterized with Fourier transform infrared (FTIR), thermal gravimetric analysis (TGA) and field emission scanning electron microscope (FESEM). The kinetics of swelling, bound and unbound waters and aqueous stability were determined experimentally. FESEM showed good miscibility between CS and PAN, FTIR showed no chemical interaction between CS and PAN; however, it did show a doublet for the sIPN, TGA showed improved thermal stability and swelling kinetic followed second order kinetics. The degree of swelling of the sIPN hydrogels samples at room temperature varied from ~2200 % (with a fair degree of stability (~30 %)) to ~1000 % (with high degree of aqueous stability (43 %)) with increase in the crosslinking time. The calculated unbound water (W_UB) max., for the blend was 52.3 % whereas for the bound (W_B) the max., was 41.9 %. However, for sIPN hydrogel films, the W_UB water decreased (max. 21.0 %) where as the W_B increased (max. 52.0 %). The decrease in W_UB and increase in the W_B is attributed to the formation of a compact structure and increase in the contact area between the water and polymers in sIPN hydrogels due to the induction of new water contacting point in these hydrogel films, respectively.     

The Sepsis-Coagulant Axis: A Review

Activation of coagulation is a normal component of the acute inflammatory response. Inflammatory cytokines initiate coagulation events locally at sites of inflammation by converting endothelium from an antithrombotic surface to a prothrombotic surface; by stimulating tissue factor production, which activates both the extrinsic and intrinsic coagulation systems; and by stimulating production of platelet-activating factors. The fibrinolytic system is initially activated but is subsequently inhibited. This results in a marked imbalance in coagulation and fibrinolysis resulting in a net procoagulant state. When thrombin generation and platelet activation exceed the body's capacity to inactivate or remove these factors, disseminated intravascular coagulation (DIC) results. DIC directly contributes to multiple organ failure and death associated with sepsis. Presently available treatments (ie, heparin and aspirin) are relatively ineffective in treating DIC; however, newer, more potent drugs may soon be available for clinical use.     

Stability of RAPD markers for determining cultivar specific DNA profiles in rye (Secale cereale L.)

Summary Cultivar specific DNA profiles in rye were revealed by polymerase chain reaction (PCR) using randomly amplified polymorphic DNA (RAPD) sequences. Ten base primers were used for the amplification of genomic DNA of rye cultivars by PCR. RAPD analysis was found to be reproducible among samples between PCR runs. When amplification profiles of different rye cultivars were compared using various primers, the overall profiles were cultivar specific. However, not all primers revealed polymorphisms. These primers appear to amplify conserved sequences in all rye cultivars. Intracultivar studies were conducted on two of the cultivars. In the cultivar Imperial, no polymorphisms were observed among ten plants analyzed with five primers. In the cultivar Balboa, polymorphisms were observed among fifty plants with four of the ten primers analyzed. Despite the small amount of intracultivar variability, RAPD analysis has the potential to be a rapid and reliable method of cultivar identification in this outcrossing species.     

Subcellular compartmentation of sugars in wheat leaves under the influence of salinity and boron toxicity

In this study, long-term effects of salinity and high boron (B) on subcellular distribution of sugars in wheat leaves were investigated. Four treatments with three replications of each; control, high B, sodium chloride (NaCl) and NaCl + high B, respectively were established according to completely randomized design. Plants were grown hydroponically and harvested after 6 weeks onset of experiment. NaCl treatment markedly decreased the shoot fresh and dry weight compared to high B or NaCl + high Boron. It increased the sugar concentrations in subcellular compartments, whereas decreased in NaCl + high B. Contrary, NaCl either alone or in combination with high B decreased the sugar contents in whole leaf compared to control or high B. Overall, higher concentrations of sugars were observed in symplast compared to apoplast indicating the symplast as major compartment for sugar transport. Furthermore, wheat plants accumulate sugars in subcellular compartments to maintain their growth under stress conditions.     

Characterization and molecular mapping of EMS-induced brittle culm mutants of diploid wheat (<Emphasis Type="Italic">Triticum monococcum</Emphasis> L.)

Diploid wheat (Triticum monococcum L, A^mA^m) is an ideal material for induced mutations which can be easily characterized and transferred to polyploid wheats. The EMS-induced brittle culm mutants, brc1, brc2, and brc3 used in the present investigation, were isolated from T. monococcum. All the brittle mutants had brittle roots, leaves, leaf sheaths, culms, and spikes, and were also susceptible to lodging. The mutants had 47–57% reduced α-cellulose in the secondary cell walls than that of T. monococcum indicating that all of them had defective synthesis of cellulose. All the mutants were monogenic recessive. Bulk segregation analysis of the mutants, using A^m genome anchored SSR markers in their F ₂ populations with T. boeoticum, located the mutants, brc1, brc2, and brc3 on chromosome 6A, 3A, and 1A of T. monococcum, respectively. Molecular analysis of the putatively linked markers showed that brc1 mapped on chromosome 6AS between Xbarc37 and Xbarc113 markers, brc2 on chromosome 3AL between Xcfd62 and Xcfa2170 markers whereas brc3 mapped on chromosome 1AL between Xgwm135 and Xwmc470 markers. Isolation and mapping of three different brittle culm mutants in wheat for the first time shows that there might be many more genes in wheat which affect synthesis and deposition of cellulose.     

Regeneration in sugarcane via somatic embryogenesis and genomic instability in regenerated plants

In the present study, embryogenic calli of sugarcane variety BL4 were induced using 2,4-dichlorophenoxyacetic acid (2,4-D) and kinetin in different concentrations and combinations. In contrast to earlier studies, embryogenic callus sectors were identified and isolated microscopically within 1–2 weeks. Subsequently, 51 media formulations were used for regeneration of proliferated embryogenic callus, using MS medium supplemented with three different cytokinins [kinetin, 6-Benzylamino purine (BAP), and thidiazuron (TDZ)] and auxins (IAA/NAA and IBA) in different combination and concentrations. After acclimatization, the genomic DNA of regenerated plants was studied to explore the insertion polymorphism of transposable elements in order to ascertain the variation among somaclones. Though low concentration of kinetin with 2,4-D was found supportive to embryogenic callus development, the highest number of regenerated plantlets was observed using BAP (1 μM), however the plantlets had very low fresh weight (2.2 g). Conversely, TDZ alone supported a significant increase in the number of plantlets regenerated (38–40) with higher fresh weight. The somaclones generated during this study showed considerable positional polymorphism of activator-like transposable elements possibly due to the stress associated with in vitro culture. This study provides a procedure to produce regenerated sugarcane plants from embryogenic callus in a relatively short time.     

Non-genetic factors affecting reproductive traits in Lohi sheep

Abstract

The data on breeding and performance records (3830) of 1134 Lohi ewes kept at an Institutional Livestock Experiment Station, Okara in Punjab province during the period from 1972 through 2001 were used to study the influence of some non-genetic factors such as year and season of birth/lambing, age and weight at first service sex of lamb born, birth type, age of dam on various reproductive traits. The age of ewes at first service averaged 615.6±8.2 days and was not significantly affected by the year and season of birth of the ewes. The ewes born during spring season had comparatively low (613.6±7.9 days) age at first service than autumn born (617.5±9.8 days). The type of birth did not significantly influence age at first service. The least squares mean for the weight at first service was 42.10±0.24 kg and was significantly (P<0.01) influenced by the ewe's year and season of birth. The spring-born ewes were heavier (42.3±0.3 kg) at first service than autumn-born ewes (41.9±0.3 kg). The weight at first service was also significantly affected by the age at first service. The type of birth did not significantly influence weight at first service. The number of services per conception averaged 1.29±0.03 and varied significantly (P<0.01) between seasons. The number of services per conception was higher (1.37±0.02) in ewes bred during autumn than those bred in spring (1.16±0.06). The effects of years and weight at service on the number of services per conception were non-significant. The number of services per conception significantly increased with advancing age. Mean gestation period was 152.31±0.08 days and it was significantly affected by the years and seasons of lambing and the age of the ewe at lambing. However, gestation length was not significantly affected due to birth type and sex of the lamb born.     

Effect of vitamins,probiotics and protein level on semen traits and seminal plasma biochemical parameters of post-moult male broiler breeders

1. A study was designed to investigate the comparative effect of supplementary vitamin E, vitamin C, probiotics and dietary crude protein concentration on semen traits and seminal plasma biochemical parameters in male broiler breeders after Zn-induced moulting.

2. A total of 180 male broiler breeders were induced to moult at 65 weeks of age by mixing ZnO in diet at the rate 3000?mg/kg of feed. After moulting, the males were divided into six groups that were given feed supplemented with: vitamin C (500?IU/kg), vitamin E (100?IU/kg), protein (140?g CP/kg), probiotics (50?mg/kg) and the combination of these components, while one group was kept as a control. Semen samples were collected weekly and semen volume, spermatozoa concentration, motility and dead spermatozoa percentage were determined. Seminal plasma was separated to determine the concentration of total antioxidant capacity (TAC), homocysteine, paraoxonase (PON1), arylesterase, ceruloplasmin, aspartate aminotransferase (AST) and alanine aminotransferase (ALT) activities.

3. Semen volume was significantly higher in the vitamin E and C groups compared to the control. Spermatozoa motility was higher in the vitamin E group and dead spermatozoa percentage was significantly lower in the vitamin C group compared with the control group.

4. Seminal plasma TAC was higher in the vitamin E group, homocysteine was lower in the vitamin C and E groups. PON1 was higher in the combination group. Arylesterase increased significantly in the vitamin C and combination groups over time. Seminal plasma AST was significantly lower in the vitamin C and E supplemented groups whereas ALT decreased significantly only in the vitamin E group compared with the control. Higher concentrations of ceruloplasmin were observed in the combination group compared with the other treatments.

5. It was concluded that additional vitamin E and C or their combination was the most potent nutrient treatment for improving the semen traits and seminal plasma biochemical characteristics in male broiler breeders after Zn-induced moulting.