Partial characterization of phytoplasmas associated with lettuce and wild lettuce phyllodies in Iran

Phytoplasmas associated with lettuce phyllody (LP) and wild lettuce phyllody (WLP) in southern Iran were partially characterized by molecular analyses and host-range studies. Agents of both diseases were transmitted by Neoaliturus fenestratus , a leafhopper colonizing lettuce and wild lettuce, to lettuce, wild lettuce, sowthistle and periwinkle, but not to safflower, sunflower, calendula and sesame. Both phytoplasmas induced bud proliferation, virescence, phyllody and witches' broom in infected plants. Total DNA extracted from infected lettuce and wild lettuce or from vector tissues was subjected to PCR using phytoplasma-specific primer pair P1/P7 or nested PCR using P1/P7 followed by R16F2n/R16R2. PCR product of nested PCR (1·2 kbp) was subjected to restriction fragment length polymorphism (RFLP). RFLP analysis of nested PCR product identified the LP, WLP and N. fenestratus -associated phytoplasmas as members of the pigeon pea witches' broom group, 16SrIX. Phylogenetic analysis of the 16S rRNA gene sequence also clustered LP and WLP phytoplasmas with other known members of the 16SrIX group. While no significant differences could be detected between LP and WLP phytoplasmas, both isolates differed from Lebanese wild lettuce phyllody in molecular properties.     

Effect of Foliar Applications of Humic Acid on Growth,Visual Quality,Nutrients Content and Root Parameters of Perennial Ryegrass (Lolium Perenne L.)

In recent years, applying humic acid (HA) has been common in turfgrass management. A series of experiments were conducted to evaluate the effect of HA on qualitative and quantitative characteristics of “Speedygreen” perennial ryegrass (Lolium perenne L.). Different concentrations of HA (0, 100, 400, and 1000 mg L^?1) were applied monthly as foliar application. Results showed that leaf phosphorus (P), potassium (K), and zinc (Zn) content, fresh and dry weight, chlorophyll content, and root fresh weights were not affected by HA. Meanwhile, HA improved the root and shoot development, except for root fresh weight. While just 100 mg L^?1 improved height, visual quality, nitrogen (N) content, roots length, and surface of roots, all of HA concentrations were effective on iron content. These results suggest that HA foliar application might be of benefit to enhance some nutrients uptake and root development of ryegrass possibly leading to improved drought resistance.     

Phytoplasmas associated with disease of coconut in Malaysia: phylogenetic groups and host plant species

Coconut palm ( Cocos nucifera ), oil palm ( Elaeis guineensis ), Bermudagrass ( Cynodon dactylon ) and Madagascar periwinkle ( Catharanthus roseus ) with symptoms indicative of phytoplasma disease were collected from different locations in Malaysia. PCR assays employing phytoplasma universal rRNA gene primers P1/P7 alone or P1/P7 followed by R16F2n/R16R2 detected phytoplasmas in eight out of 20 Malayan Red Dwarf (MRD), nine out of 12 Malayan Yellow Dwarf (MYD) and 12 out of 12 Malayan Tall (MT) coconut palms displaying coconut yellow decline symptoms. Positive detections were also obtained from six out of six oil palm seedlings showing symptoms of yellowing and necrosis, from 10 out of 10 Bermudagrass samples with white leaf symptoms, and from eight out of eight periwinkle plants showing phyllody, virescence, little leaf, proliferation and foliar yellowing. Phytoplasmas were not detected in any of the symptomless plants tested. Sequencing and phylogenetic analysis of PCR products determined that phytoplasmas infecting both MRD and MT coconuts and Bermudagrass in Serdang, Selangor State, were all members of the 16SrXIV ' Candidatus Phytoplasma cynodontis' group, whereas isolates in periwinkle in Serdang were all members of the 16SrI ' Ca. Phytoplasma asteris' group. However, the phytoplasmas detected in MYD coconuts and oil palms from Banting, Selangor State, and in periwinkle from Putrajaya were collectively very similar (99%), but shared <97·5% similarity with 16S rDNA sequences of all other known phytoplasmas, indicating that they represent a novel taxonomic group. Thus, at least two phylogenetically distinct phytoplasmas are associated with the coconut yellow decline syndrome in Malaysia, both of which were also detected in other plant species.     

Growth performance and plasma metabolites in juvenile Siberian sturgeon <Emphasis Type="Italic">Acipenser baerii</Emphasis> (Brandt, 1869) subjected to various feeding strategies at different sizes

The effect of various feeding strategies was evaluated on growth performance and biochemical parameters in two sizes of Siberian sturgeon (465.75?±?11.18 and 250.40?±?12 g) during 45 days. Fish were distributed into six experimental treatments including large fish with satiation feeding (LA), small fish with satiation feeding (SA), large fish with 50% satiation feeding (LR), small fish with 50% satiation feeding (SR), large starved fish (LS), and small starved fish (SS). Differences in final weight between LA and LR treatments were not noticeable, whereas SA and SR treatments showed significant differences. Growth parameters were more affected in small fish. In condition factor and weight gain in starved treatments, a considerable reduction occurred by interaction between feeding strategies and fish size, so the lowest values were obtained in SS treatment. Glucose levels significantly decreased in small fish during the starvation. Interaction between feeding strategy and fish size indicated the highest and lowest albumin level in SA and SS treatment, respectively. Cholesterol, triglyceride, total protein, and globulin showed no significant differences. It can be deduced that small fish are more sensitive to starvation than the large fish. Since glucose and albumin showed significant decrease in starved small fish, these parameters can help to monitor nutritional status and feeding practices. It was indicated that in both sizes of Siberian sturgeon, feeding 50% satiation reduced the food cost without negative impact on physiological condition, and it can be considered as an appropriate strategy to face unfavorable circumstances.     

Expression of Two Basic mRNA Biomarkers in Peripheral Blood of Patients with Non-Small Cell Lung Cancer Detected by Real-Time RT-PCR,Individually and Simultaneously

Introduction: Although extensive research has been conducted on lung cancer markers, a singular clinically applicable marker has not been found yet. The objective of this study was to evaluate the sensitivity and the specificity of carcinoembryonic antigen (CEA) mRNA and lung-specific X protein (LUNX) mRNA biomarkers in peripheral blood to detect lung cancer individually and simultaneously. Methods: Thirty patients affected by lung cancer and 30 healthy individuals were studied in this research. Three vials of cDNA were made from each sample after taking peripheral blood samples and extracting total RNA. Each sample was examined by the real-time RT-PCR technique. The result from each vial was then compared with the sensitivity of overall marker. Results: The CEA mRNA was positive in 24 out of 30 lung cancer patients. Hence, its sensitivity was determined at 80%, differing significantly from that observed in healthy individuals, where 11 positive cases were seen. The overall sensitivity of this marker was significantly associated with positivity in vials 2 and 3 but not in vial 1. The LUNX mRNA was positive in 21 out of 30 patients, indicating 70% sensitivity. This finding significantly differed from that in healthy individuals. The overall sensitivity of this marker was significantly associated with positivity in vials 1 and 3, but not in vial 2. In 93.3% of the patients, at least one positive marker was observed. Conclusion: The mentioned mRNA could be suggested as sensitive and specific markers in peripheral blood for primary diagnosis of lung cancer.Key Words: Lung neoplasms, RNA, Carcinoembryonic antigen, Sensitivity and specificity     

The frequency of eight common point mutations in CYP21 gene in Iranian patients with congenital adrenal hyperplasia

BACKGROUND: Congenital Adrenal Hyperplasia (CAH, the inherited inability to synthesize cortisol) is one of the most common (1 in 10000 to 1 in 15000) autosomal recessive disorders. More than 95% of cases of CAH are caused by 21-hydroxylase deficiency (21-OHD). Females with severe, classic 21-OHD are exposed to excess androgens prenatally and are born with virilized external genitalia. Most patients cannot synthesize sufficient aldosterone to maintain sodium balance and may develop potentially fatal salt wasting crisis if not treated. METHODS: We applied allele specific PCR to detect the eight common mutations in the CYP21 gene in patients. Fifty unrelated patients with symptoms of classical CAH were studied. RESULTS AND CONCLUSION: Seventy percent of our subjects had these mutations. The most frequent mutations were found to be I2G and del-8 bp (28% and 13%, respectively). The frequencies of other alleles were as following: I172N, 9%; V281L, 3%; exon 6 cluster (I236N, V237E and M239K), 4%; Q318X, 9%; R356W, 5%; and P30L, 0%. The frequency of mutations did not differ substantially from other ethnics, however, a higher rate of del-8 bp (13%) was found in our population. The aim of this study was to detect common mutations for setting up a molecular method for prenatal diagnosis.     

Morphological and molecular characterization of Fusarium spp. associated with yellowing disease of black pepper (Piper nigrum L.) in Malaysia

Yellowing disease is one of the most important diseases of black pepper (Piper nigrum L.). To characterize the pathogen(s) responsible for yellowing disease of black pepper in Malaysia, 53 isolates of Fusarium were collected from the roots of diseased black pepper plants and from rhizosphere soils from major growing areas in Sarawak and Johor. A total of 34 isolates of F. solani and 19 isolates of F. proliferatum were obtained and identified based on morphological characteristics and molecular techniques. DNA sequencing of the internal transcribed spacers (ITS1 and ITS2) and 5.8S ribosomal DNA regions was conducted to identify Fusarium species. Nucleotide sequence analysis of the ITS regions revealed that this molecular technique enabled identification of Fusarium at the species level as F. solani and F. proliferatum. In a pathogenicity test on 3-month-old black pepper plants, F. solani was pathogenic, but F. proliferatum was not. On the basis of morphology, DNA sequences and pathogenicity of the fungal isolates from the diseased plants, we showed that yellowing disease on black pepper is caused by F. solani     

Distribution and Contamination of Heavy Metal in the Coastal Sediments of Port Klang, Selangor, Malaysia

The coastal sediments of Port Klang in Malaysia were monitored from November 2009 to October 2010 to evaluate the spatial distribution of heavy metals As, Cu, Cd, Cr, Ni, Pb, Zn, Pb, Mn, Al and Fe. Sediment samples were collected from 21 stations, covering three subsidiary ports, namely West Port, North Port and South Port, at three-month intervals. The geo-accumulation index and the enrichment factor were estimated to assess contamination status based on background values. Additionally, the sediment quality guide was applied to evaluate the adverse biological effects of heavy metals. These results show that the concentrations of some metals, such as As, Cd and Pb were comparatively higher than the background values. This is considered a critical environmental issue for this region. Furthermore, the toxicity estimation indicates that living organisms have a high risk of As exposure. Spatial distribution maps of heavy metals would aid in the identification of pollution sources and vulnerable sites.     

Diagnostic techniques for detection of phytoplasma diseases: past and present

Journal of Plant Diseases and Protection - Phytoplasmas are intracellular plant pathogens originated from a single lineage derived from Gram-positive bacteria and belong to the class Mollicutes....