Metabarcoding of feces and intestinal contents to determine carnivorous diets in red-crowned cranes in eastern Hokkaido,Japan

The red-crowned crane Grus japonensis in Hokkaido, Japan forms a closed population as a residence that is independent of the mainland population. Based on observations of a limited number of individuals as well as cranes in captivity, red-crowned cranes are omnivores and eat fish, worms, insects and plants in their own territories except in winter, when they are fed with dent corn that is supplied in eastern Hokkaido. DNA metabarcoding based on high throughput sequencing was carried out using universal primer sets for cytochrome oxidase subunit I gene. Feces from 27 chicks collected in June and July in the period from 2016 to 2018 and intestinal contents from 33 adult and subadult cranes that were found dead almost throughout year in 2006–2013 in the field in eastern Hokkaido were used. Although compositions varied considerably in the cranes, both insects and fish were found in adults and subadults to the same extents, while insects were predominant in chicks. Both insects and fish were detected in all seasons for adults and subadults. Horse flies, scarab beetles and weevils accounted for the most of the insects regardless of the life stage. Dace, stickleback, flatfish and sculpin were the major fish species in adults, while chicks ate almost only stickleback. The results provide the first comprehensive data on carnivorous diets in wild red-crowned cranes in eastern Hokkaido as basis for conservation of red-crowned cranes, for which the life style and area continue to change.     

Change in translucency of squid mantle muscle upon storage

ABSTRACT:   Change in the translucency of squid mantle muscle during itsstorage at 0°C was studied by monitoring L* valueand turbidity. Two indicators showed that squid mantle muscle lostits translucency and reached maximal turbidity within 24 hof storage. Thickness of mantle muscle also increased by 15% in12 h, earlier than the loss of translucency. ATP contentdecreased with storage time and was completely lost in almost 24 h,a similar period to translucency loss, but later than rigor contraction.Development of black color on skin surface by chromatophores wasfully achieved in 24 h. It was thus concluded that ATPcontent was well correlated with a loss of translucency or increasein the turbidity of mantle muscle and development of dark coloron the surface skin of mantle.     

Genetic and antigenic characterization of bovine viral diarrhea viruses isolated from cattle in Hokkaido,Japan

In our previous study, we genetically analyzed bovine viral diarrhea viruses (BVDVs) isolated from 2000 to 2006 in Japan and reported that subgenotype 1b viruses were predominant. In the present study, 766 BVDVs isolated from 2006 to 2014 in Hokkaido, Japan, were genetically analyzed to understand recent epidemics. Phylogenetic analysis based on nucleotide sequences of the 5′-untranslated region of viral genome revealed that 766 isolates were classified as genotype 1 (BVDV-1; 544 isolates) and genotype 2 (BVDV-2; 222). BVDV-1 isolates were further divided into BVDV-1a (93), 1b (371) and 1c (80) subgenotypes, and all BVDV-2 isolates were grouped into BVDV-2a subgenotype (222). Further comparative analysis was performed with BVDV-1a, 1b and 2a viruses isolated from 2001 to 2014. Phylogenetic analysis based on nucleotide sequences of the viral glycoprotein E2 gene, a major target of neutralizing antibodies, revealed that BVDV-1a, 1b and 2a isolates were further classified into several clusters. Cross-neutralization tests showed that BVDV-1b isolates were antigenically different from BVDV-1a isolates, and almost BVDV-1a, 1b and 2a isolates were antigenically similar among each subgenotype and each E2 cluster. Taken together, BVDV-1b viruses are still predominant, and BVDV-2a viruses have increased recently in Hokkaido, Japan. Field isolates of BVDV-1a, 1b and 2a show genetic diversity on the E2 gene with antigenic conservation among each subgenotype during the last 14 years.     

Local convergence zones or discontinuous lines in the Taklimakan Desert, Northwest China

In order to study convergence zones or discontinuous lines formed locally in the Taklimakan Desert,we analyzed available MODIS images onboad TERRA or AQUA satellite for ten cases:29 March 2002,14 April 2002;2 January 2003;21 April 2003;26 March 2004;28 April 2004;30 January 2005;25 June 2005;3 December 2005;and 26 July 2006.We used weather maps published by the Japan Mete-orological Agency for the Asia and Pacific region at 500 hPa,700 hPa and 850 hPa,at 00Z and 12Z to analyze the meteorological conditions occurring in each case.We estimated the positions of air streams,convergence zones or discontinuous lines between them,and thermal conditions on the maps and con-firmed the presence of cumulus and cumulonimbus clouds through satellite images in particular.After a review of previous studies,this paper introduced the results of the present study.Closed warm areas in the Taklimakan Desert and on the Tibetan Plateau and local convergence zones or discontinuous lines in the Taklimakan Desert were discussed together with their diurnal changes,using composite maps of the ten cases.Along the long axis of the desert the convergence zones or discontinuous lines normally extend 70-80 km in a west-east direction,but are suspected to exceed 100 km in extreme cases.On the other hand,the convergence zones or discontinuous lines extending in a north-south direction on the southern fringe of the desert have a length of 40-60 km.The closed warm areas show clear diurnal changes,but they were not detected at the 500 hPa level.An example of a clear convergence zone running in a north-south direction on 26 July 2006 was presented in detail with corresponding satellite images.     

Rhizome dynamics in Calystegia japonica Choisy and Calystegia hederacea Wall. in relation to overwintering

Calystegia japonica Choisy and Calystegia hederacea Wall., common perennial weeds throughout cropped and uncropped land in Japan, are known to regenerate mostly by rhizomes. The rhizome dynamics of the two species were investigated, focusing on their overwintering characteristics. The dry weight of rhizomes continued to increase for 6–7 weeks after the decrease in weight of the aerial parts began, then it decreased in winter because of the partial death and consequent fragmentation of the rhizomes. Overwintering as naturally fragmented rhizomes is a unique characteristic of the two Calystegia spp. as it is not observed in other rhizomatous weeds that maintain systematic connections at least during the following regeneration in spring. In C. japonica , rhizome degradation was more pronounced and more systematic than in C. hederacea , where thicker fragments that included apices remained. Qualitative changes in C. japonica rhizomes, such as increases in dry matter accumulation and starch, and a temporary decrease in sprouting ability, seem to relate to this specialized survival mechanism. Calystegia hederacea did not show either specialization or preparation for overwintering in its rhizome. The adaptability of Calystegia weeds to annual crop fields can be attributed to their capacity to regenerate from naturally fragmented rhizomes.