Using Canonical Correspondence Analysis (CCA) to identify the most important DEM attributes for digital soil mapping applications

Topography has an important influence on the distribution of soils and their properties, especially in hilly lands, and related data are easily available, measurable and recognizable from digital elevation models (DEMs). To our knowledge, little attention has previously been paid to the effect of DEM attributes on the distribution of soils, using ordination methods. The objective of this study was to analyze relationships between topographical properties derived from DEM and soil distribution and to discuss their applicability in Digital Soil Mapping (DSM). The study was carried out in the Borujen area of central Zagros, Iran. A total of 13 plots (each one of 6.75 ha) were set up to calculate the percentages of the dominant soil series. Fifteen DEM attributes, including slope, aspect, curvature, maximum and minimum curvature, planform curvature, profile curvature, tangent curvature, wetness index, power index, sediment index, area solar radiation, direct radiation, diffuse radiation and direct duration were also computed. Canonical Correspondence Analysis (CCA) was used to summarize the data set and to evaluate the expected relationships. The results obtained show that there was a relatively strong correspondence between soils' series distribution and topographical properties. The DEM attributes that best related to the first axis were maximum curvature, slope and sediment index, all of which significantly positive correlated, and wetness index, direct duration and minimum curvature, all of which were negatively related. The second axis showed a negative trend with wetness index, direct duration and aspect, and a positive trend with sediment index and slope. These gradients were closely related to the first three canonical axes and explained 71.8% of the total variance of the soil series. The residual variance (28.2% of the total variance) was related to other soil forming factors, like parent material and vegetation cover, which were not investigated in this study. Considering that DEMs are still the most important source of environmental information, understanding the role of topographical factors in a region should help us to identify soils and their properties better and enable us to apply these derivates as input data in DSM.     

Natural Food Selectivity Changes with Weights of Nile Tilapia,Oreochromis niloticus (Linnaeus), Reared in Fertilized Earthen Ponds

This work was carried out to study the relationship between fish weight and natural food selectivity of Nile tilapia, Oreochromis niloticus (Linnaeus) reared in earthen ponds without supplementary diet and to guide the adaptation of feeding and fertilization strategies. Fish were stocked (1.5 fish/m²) in four fertilized earthen ponds (0.1 ha) for 6 months. Fifty fish were sampled monthly to estimate individual total weight and length and evaluate stomach contents. Fish specimens were categorized into different weight classes: <25 g, 25–50 g, 50–75 g, 75–100 g, and 100–125 g. Overall, the 50–75 g weight class had the highest degree of stomach fullness. The intestinal length-fish length ratio was similar across all fish weights, ranging from 2.9–3.4. Likewise, the composition of food items found in fish stomach was ranked as phytoplankton > detritus > zooplankton. Phytoplankton contribution to gut content increased with increasing fish weight, while detritus and zooplankton contribution decreased. Zooplankton never exceeded 1% of total stomach contents. Cyanobacteria, Chlorophyceae, Bacillariophyceae and Euglenophyceae mostly represented the phytoplankton. Bacillariophyceae dominated the phytoplanktonic portion of stomach contents at small fish size (<75 g/fish), while Chlorophyceae is the dominant group at large fish size (> 75 g/fish). Fish could select Cyanobacteria and Euglenophyceae at all fish weights, meanwhile Chlorophyceae and Bacillariophyceae were eaten with slight selectivity at larger weights..     

Production of monoclonal antibody against recombinant bovine sex-determining region Y (SRY) and their preferential binding to Y chromosome-bearing sperm

Separation of X and Y chromosome-bearing sperm is an appropriate method for the selection of desired sex of offspring to increase the profit in livestock industries. The purpose of this study was the production of a monoclonal antibody against recombinant bovine sex-determining region Y protein for separation Y sperm. The hybridoma cells from splenocytes of immunized female's balb/C mice and Sp2/0 cells were made. The binding affinity of our monoclonal antibody (mAbSRY2) was compared with mouse monoclonal SRY-15. The Western blot method indicated that mAbSRY2 successfully detected the rbSRY protein. The specificity and sensitivity of mAbSRY2 is comparable to SRY-15 commercially ones. The SRY gene in 100% of bull semen contains the Y chromosome that had the strongest binding affinity to mAbSRY2 was synthesized. In other words, the binding affinity of semen contains the X sperms near the negative control. In general, this immunological method can help to separate X from Y sperms. However, the mAbSRY2 is bind to Y-bearing sexed sperm, but in the future; the sexed sperms need to apply in farms.     

Sequence and phylogenetic analysis of the non-structural 3A and 3B protein-coding regions of foot-and-mouth disease virus subtype A Iran 05

The A Iran 05 foot-and-mouth disease virus (FMDV) subtype was detected in Iran during 2005 and has proven to be highly virulent. This study was undertaken to focus on molecular and phylogenetic analysis of 3A and 3B coding-regions in the A Iran 05 field isolate. To assess the genetic relatedness of A Iran 05 isolate the nucleotide and predicted amino acid sequences of the 3AB region of type A FMDV isolates were compared with twenty previously described type A FMDV isolates. The phylogenetic tree based on the 672 bp 3AB gene sequences of type A FMDV from thirteen different locations clustered them into five distinct lineages. The A Iran 05 isolate clustered in lineage A along with four type A variants and was closely matched with viruses isolated in Turkey and Pakistan during 2005~2006. The number of protein sequence differences exhibited by each of the isolates revealed that A Iran 05 isolate contains three amino acid substitutions at positions 47 and 119 of 3A and 27 of the 3B coding region. The nucleotide identity between A Iran 05 and the other four isolates of lineage A was estimated to be 98%.     

Quantifying the effect of inbreeding on average daily gain and Kleiber ratio in Mazandaran native chickens

Tropical Animal Health and Production - The aims of this study was to evaluate inbreeding effects for growth rate (average daily gain from hatch to 8&nbsp;weeks of age (ADG1–8), average...     

Induction of superoxide dismutase,malate dehydrogenase and phenylalanine ammonia-lyase during enhancing resistance of common bean against Xanthomonas axonopodis pv. phaseoli by exogenous salicylic acid

Journal of Plant Diseases and Protection - Bacterial blight of common bean caused by Xanthomonas axonopodis pv. phaseoli (Xap) is one of the most devastating diseases and causes serious yield...     

Dietary curcumin nanoparticles promoted the performance,antioxidant activity,and humoral immunity,and modulated the hepatic and intestinal histology of Nile tilapia fingerlings

Fish Physiology and Biochemistry - The current study investigated the effects of dietary curcumin nanoparticles (C-NPs) on the performance, hemato-biochemical profile, digestive enzymes activities,...     

Rates of inbreeding and genetic diversity in Iranian Holstein Cattle

The accumulation of inbreeding and the loss of genetic diversity is a potential problem in Holstein dairy cattle. The goal of this study was to estimate inbreeding levels and other measures of genetic diversity, using pedigree information from Iranian Holstein cattle. Edited pedigree included 1 048 572 animals. The average number of discrete generation equivalents and pedigree completeness index reached 13.4 and 90%, respectively. The rate of inbreeding was 0.3% per year. Effective number of founders, founder genomes, non‐founders and ancestors of animals born between 2003 and 2011 were 503, 15.6, 16.1 and 25.7, respectively. It was proven that the unequal founder contributions as well as bottlenecks and genetic drift were important reasons for the loss of genetic diversity in the population. The top 10 ancestors with the highest marginal genetic contributions to animals born between 2003 and 2011 and with the highest contributions to inbreeding were 48.20% and 63.94%, respectively. Analyses revealed that the most important cause of genetic diversity loss was genetic drift accumulated over non‐founder generations, which occurred due to small effective population size. Therefore, it seems that managing selection and mating decisions are controlling future co‐ancestry and inbreeding, which would lead to better handling of the effective population size.