The association of Humicola fuscoatra with corky root symptoms in wilted glasshouse tomatoes

A wilt disease including severe root rot and corky rot was observed near the end of the growing season in glasshouse tomato (Lycopersicon esculentum) plants, growing in soilless systems. Numerous aleuroconidia of the common soil-borne fungusHumicola fuscoatra var.fuscoatra were always present in the cells of affected roots. The pathogenicity ofH. fuscoatra was not established, but inoculation with previously used rockwool from a crop with corky root symptoms reproduced the disease. It is suggested that near the end of the growing season the artificial substrate offers favourable conditions for the development of a complex root disease in whichH. fuscoatra may play a role.     

Managing Phytophthora ramorum in the Netherlands1

Phytophthora ramorum came to the Netherlands in 1993. Despite initially not seeming to pose a high risk, findings in California showed its potential destructive impact on ecosystems. A programme began in the Netherlands to eliminate P. ramorum from nurseries and surveys in the natural environment were held to obtain information to determine a strategy for dealing with the disease. About 1100 nurseries are inspected annually by NAKtuinbouw under the auspices of the Plant Protection Service and measures are taken according to EC directives. The percentage of infected nurseries decreased steadily during recent years, from 4% in 2002/2003 to 0.5% in 2004/2005. Surveys in the natural environment show that P. ramorum occurs on 2% of the sites with Rhododendron and therefore it was concluded that an elimination scenario is not realistic. A programme based on containment measures supported by an extension programme was put into place with its effects being monitored by the Plant Protection Service. 12 years of observing P. ramorum show that the risk for indigenous trees and shrubs in the Netherlands is very limited. Spread from infected rhododendrons to other potential hosts, even at heavily infected Rhododendron sites, hardly takes place although some infected Quercus rubra trees have been found. Recently several new Phytophthora species were found in natural environments in Europe and California, mainly as a result of intensive P. ramorum surveys. As well as P. ramorum, the Phytophthora spp. P. kernoviae, P. numerosa and P. pseudosyringae pose risks, indicating the need for a more general approach against Phytophthora diseases. As a result, a new protocol for detection and identification of Phytophthora spp. both as a group and individually is being developed and workers are asking whether these Phytophthora species could be managed together.     

Diagnostic Values and Utility of Immunological, Morphological, and Molecular Methods for In Planta Detection of Phytophthora ramorum

ABSTRACT In this study, six methods for the detection of Phytophthora ramorum in planta were compared using naturally infested rhododendron plant material. The methods included two immunological methods, one an enzyme-linked immunosorbent assay (ELISA) and the other using a lateral flow format (LFD). Three molecular tests based on the polymerase chain reaction (PCR) using TaqMan chemistry also were assessed, including two assays designed for specific detection of P. ramorum and one designed for genus-level detection of Phytophthora. Isolation followed by morphological identification also was assessed. The diagnostic values of each of the methods, evaluated based on diagnostic sensitivity, diagnostic specificity, positive predictive value, and negative predictive value, were calculated based upon the test results from 148 field samples. The "gold standard" used for the calculations was the final diagnosis, which was based on either a positive PCR result or successful isolation of P. ramorum. The Phytophthora spp. TaqMan PCR, ELISA, and LFD had higher sensitivities than the P. ramorum-specific methods, which make them useful as prescreening methods, where positive results must be confirmed by PCR or isolation. The article discusses practical advantages and disadvantages of each of the methods and how they are valuable in the diagnostic process, according to the circumstances of use (that is, diagnosis or surveillance) and in relation to the prevalence of P. ramorum infestation in the population to be tested.     

Development in Aspergillus

The genus Aspergillus represents a diverse group of fungi that are among the most abundant fungi in the world. Germination of a spore can lead to a vegetative mycelium that colonizes a substrate. The hyphae within the mycelium are highly heterogeneous with respect to gene expression, growth, and secretion. Aspergilli can reproduce both asexually and sexually. To this end, conidiophores and ascocarps are produced that form conidia and ascospores, respectively. This review describes the molecular mechanisms underlying growth and development of Aspergillus.Key words: Aspergillus, fungi, asexual reproduction, sexual reproduction, development, conidium, conidiophore, vegetative mycelium, heterogeneity, ascocarp, ascospore, fruiting body     

The development of a validated real-time (TaqMan) PCR for detection of Stagonosporopsis andigena and S. crystalliniformis in infected leaves of potato and tomato

Stagonosporopsis andigena and S. crystalliniformis are serious foliage pathogens on potato (Solanum tuberosum) and tomato (Solanum lycopersicum). As both species have been recorded only in the Andes area, S. andigena is listed as an A1 quarantine organism in Europe. The actin region of isolates of Stagonosporopsis and allied species of Boeremia, Didymella, Peyronellaea and Phoma was amplified using generic primers. DNA sequence differences of the actin gene were utilised to develop species-specific real-time (TaqMan) PCR assays for the detection of S. andigena and S. crystalliniformis in leaves of potato or tomato. The specificity of the TaqMan PCR assays was determined on genomic DNA extracted from two S. andigena and two S. crystalliniformis isolates and 16 selected isolates of Stagonosporopsis, Phoma and Boeremia, which are the closest relatives. The validation of the methods developed included the DNA extraction and the TaqMan PCR assays. The performance criteria specificity, analytical sensitivity, reproducibility, repeatability and robustness of the TaqMan PCR assays demonstrated the reliability of both methods for the detection of S. andigena and S. crystalliniformis in leaf material. The TaqMan PCR assays were tested on symptomatic leaves of potato and tomato that were obtained after artificial inoculation of detached leaves with both pathogens under quarantine conditions. In the artificial inoculation experiments both S. andigena and S. crystalliniformis caused leaf infections on potato and tomato.