Evaluation of the temporal distribution of <Emphasis Type="Italic">Fusarium graminearum</Emphasis> airborne inoculum above the wheat canopy and its relationship with Fusarium head blight and DON concentration

With the aim of unravelling the role of airborne Fusarium graminearum inoculum in the epidemic of Fusarium head blight (FHB) caused by this species in wheat spikes, a network of Burkard air samplers was set up in five wheat fields distributed in Belgium from 2011 to 2013. Each year from April to July, the daily amounts of F. graminearum inoculum above the wheat canopy were quantified using a newly developed TaqMan qPCR assay. The pattern of spore trapping observed was drastically different per year and per location with a frequency of detection between 9 and 66% and a mean daily concentration between 0.8 and 10.2 conidia-equivalent/m³. In one location, air was sampled for a whole year. Inoculum was frequently detected from the wheat stem elongation stage until the end of the harvesting period, but high inoculum levels were also observed during the fall. Using a window-pane analysis, different periods of time around wheat flowering (varying in length and starting date) were investigated for their importance in the relation between airborne inoculum and FHB parameters (FHB severity, frequency of F. graminearum infection and DON). For almost all the combinations of variables, strong and significant correlations were found for multiple window lengths and starting times. Inoculum quantities trapped around flowering were highly correlated with F. graminearum infection (up to R?=?0.84) and DON (up to R?=?0.9). Frequencies of detection were also well correlated with both of these parameters. DON concentrations at harvest could even be significantly associated with the F. graminearum inoculum trapped during periods finishing before the beginning of the anthesis (R?=?0.77). Overall, these results highlight the key role of the airborne inoculum in F. graminearum epidemics and underline the importance of monitoring it for the development of disease forecasting tools.     

Effect of null mutations in the AbNIK1 gene on saprophytic and parasitic fitness of Alternaria brassicicola isolates highly resistant to dicarboximide fungicides

Alternaria brassicicola field isolates highly resistant to dicarboximide fungicides (DCF) and carrying non‐sense codons or micro‐deletions in the AbNIK1 gene encoding a group III histidine kinase were characterized at the protein level using specific antibodies. These isolates, as well as laboratory mutants expressing the same resistant phenotype, were shown to correspond to null mutants. The fitness of these isolates was compared to that of wild‐type isolates by measuring i) mycelial growth, ii) sporulation and iii) conidial germination under standard conditions. None of these factors were affected in the resistant isolates. Mycelial growth was also measured under stress conditions. Unlike suboptimal incubation temperatures or exposure to the superoxide ion generator menadione, osmotic stress generated by high sorbitol concentrations in the culture medium significantly affected the growth of AbNIK1‐null mutants compared to wild‐types. The effects of these mutations on parasitic fitness were estimated under both controlled and field conditions after inoculation of radish with individual isolates, to measure their aggressiveness, or with mixed conidial suspensions, to measure their competitive ability against wild‐type isolates. These tests on radish seedlings revealed that DCF‐resistant isolates were still aggressive. Despite this, the data obtained in the competition experiments showed that the loss of the ability to synthesize AbNIK1p in A. brassicicola DCF‐resistant mutants was linked to a severe decrease in their competitiveness.     

Decreasing azole sensitivity of Z. tritici in Europe contributes to reduced and varying field efficacy

Journal of Plant Diseases and Protection - Septoria tritici blotch (STB; Zymoseptoria tritici) is the most important leaf disease of wheat in Northern and Western Europe. The problem of fungicide...     

Real-time PCR quantification and spatio-temporal distribution of airborne inoculum of <Emphasis Type="Italic">Puccinia triticina</Emphasis> in Belgium

In order to better understand the epidemiology of Puccinia triticina and the relationship between airborne inoculum and disease severity, a method for quantifying airborne inoculum was developed using volumetric Burkard 7-day spore traps and real-time PCR. The method was applied using a spore trap network from 1 March to 30 June over a 5-year period. At one site, the inoculum was quantified continuously over 3 years, during which it showed a seasonal distribution, with the highest quantities and detection frequencies occurring between May and June. High mean daily quantities (65.8–121.2 spores/day) and detection frequencies (±20 % of days) were also reported after harvest from September to December. In the coldest months of the year, almost no detection was recorded (1–6 % of days). The study results indicate that the absence of inoculum in the air when upper leaves are emerging could be a limiting factor for the risk of epidemics. Mean daily quantities of airborne inoculum (0–131.4 spores/day) were measured from the beginning of stem elongation (GS30) to the flag leaf stage (GS39). These values were well correlated with the disease severity levels measured during grain development. A multiple regression analysis showed that total rainfall in late summer and autumn and mean minimum temperature in winter positively influence spore density between GS30 and GS39 in the following spring (R² = 0.73). This relationship and the patterns of airborne inoculum observed in fields strongly suggest the existence of a ‘green bridge’ phenomenon in Belgium. Our study also showed that the quantification of airborne inoculum or its estimation using a weather-based predictive model could be useful for interpreting disease severity models and avoiding over-estimates of disease risk.     

Multiplex qPCR assay for simultaneous quantification of CYP51-S524T and SdhC-H152R substitutions in European populations of Zymoseptoria tritici

Demethylation inhibitor (DMI) and succinate dehydrogenase inhibitor (SDHI) fungicides are currently relied upon for the control of septoria tritici blotch (STB) in European wheat fields. However, multiple mutations have occurred over time in the genes encoding the targeted proteins that have led to a practical loss of fungicide efficacies. Among the different amino acid substitutions in Zymoseptoria tritici associated with resistance to these fungicides, S524T in CYP51 (DMI target) and H152R in SdhC (SDHI target) are regarded as conferring the highest resistance factors to DMI and SDHI, respectively. To facilitate further studies on the monitoring and selection of these substitutions in Z. tritici populations, a multiplex allele-specific quantitative PCR (qPCR) assay allowing for estimation of both allele frequencies in bulk DNA matrices was developed. The assay was then used on complex DNA samples originating from a spore trap network set up in Belgium, Denmark, Sweden, and Ireland in 2017 and 2018, as well as on leaf samples with symptoms. The S524T allele was present in all field samples and its proportion was significantly higher in Ireland than in Belgium, whereas the proportion of H152R was only sporadically present in both countries. The frequency of S524T varied greatly in the airborne inoculum of all four countries; however, the H152R allele was never detected in the airborne inoculum. The method developed in this study can be readily adopted by other laboratories and used for multiple applications including resistance monitoring in field populations of Z. tritici.