Influence of failure mode induced by a horizontally operated single-tip penetrometer on measured soil resistance

Excessive soil compaction has negative effects for agriculture and the environment. Measurement of soil strength is a common indirect measure of soil compactness. In the context of precision farming, on-the-go soil mechanical resistance measurements using single- and multiple-tip horizontal sensors have been developed. It has been reported that there was a significant relationship between soil mechanical resistance values measured with both vertically operated cone penetrometer and horizontally operated sensors only for relatively deep layers. It was hypothesized that the differences in horizontally measured soil resistance in different soil layers could be explained by different failure modes. The objective of this research was to develop a horizontal soil mechanical resistance sensor and to observe the failure mode in front of it while penetrating soil at three different depths. A single-tip horizontal penetrometer was equipped with a 30° prismatic tip and had a base area of 324 mm². The prismatic tip was mounted horizontally to an S-shaped load cell housed inside a shank. A data-logging system was also developed to record measurements with 10 Hz sampling rate. The sensor was tested in a field with silty clay loam soil at three depths of 20, 25 and 30 cm. Cone index (CI) values were obtained with 1 cm depth increments and 1 m horizontal intervals along each transect for comparison using a standard cone penetrometer. The results showed that average horizontal soil mechanical resistance index (HRI) values for both depths of 20 and 25 cm were similar due to the brittle failure mode in both cases. However, when the tip was operated below the critical depth of the sensor, the value of HRI at 30 cm depth increased three times when compared with 20 or 25 cm depth values. This was due to change in failure mode from brittle to compressive mode below the critical depth. There was a significant relationship (R² = 0.75) between HRI and CI for the 30-cm depth, whereas for shallower depths the relation was not significant. It can be concluded that the correlation between measurements obtained with the vertically and horizontally operated penetrometers would be significant as long as both produced the same soil failure mode.     

Evaluation of genetic diversity among some Iranian wild asparagus populations using morphological characteristics and RAPD markers

An evaluation of genetic diversity in 39 wild asparagus populations was carried out using morphological and RAPD markers. A combination of morphological traits and random RAPD primers was used to examine the level of genetic variation and polymorphisms among the populations. A factor analysis using Ward's method on mean values of morphological characteristics indicated seven main factors resulting in four groups. Analysis of polymorphic bands using Jaccard's similarity coefficient indicated that genetic similarity ranged between 0.71 and 0.29. At a similarity level of 0.64, the populations were divided in three sub-clusters, containing 34, four and one populations, respectively. Significant regression associations were found between 21 morphological characteristics and 18 RAPD markers, revealing some informative markers associated with some traits. The highest R² was related to 18 RAPD markers associated with gender (53.5%) that among them BA-04₂₀₀₀ had a maximum R². The results showed that Iranian wild asparagus with its high levels of genetic variation could be considered as a valuable gene pool for future asparagus breeding programs. Furthermore, it could be inferred that morphological characteristics and RAPD markers are suitable tools to discriminate asparagus populations for the evaluation of genetic diversity.     

Association between CARD15/NOD2 gene polymorphisms and paratuberculosis infection in cattle

Paratuberculosis represents a major problem in farmed ruminants and at the present is considered a potential zoonosis. The disease is caused by Mycobacterium avium subsp. paratuberculosis, and susceptibility to infection is suspected to have a genetic component. Caspase recruitment domain 15 (CARD15) gene encodes for a cytosolic protein implicated in bacterial recognition during innate immunity. Crohn's disease (CD) is an idiopathic inflammatory bowel disease in humans comparable in many features to bovine paratuberculosis involving an abnormal mucosal immune response. The association between mutations in the CARD15 gene and increased risk of Crohn's disease has been described. The objective of this candidate gene case-control study was to characterize the distribution of three polymorphisms in the bovine CARD15 gene and test their association with paratuberculosis infection in cattle. Three previously reported single nucleotide polymorphisms (E2[-32] intron 1; 2197/C733R and 3020/Q1007L) were screened for the study population (431 adult cows). The statistical analysis resulted in significant differences in allelic frequencies between cases and controls for SNP2197/C733R (P<0.001), indicating a significant association between infection and variant allele. In the analysis of genotypes, a significant association was also found between SNP2197/C733R and infection status (P<0.0001); cows with the heterozygous genotype were 3.35 times more likely to be infected than cows with the reference genotype (P=0.01). Results suggest a role for CARD15 gene in the susceptibility of cattle to paratuberculosis infection. These data contribute to the understanding of paratuberculosis, suggest new similarities with Crohn's disease and provide new information for the control of bovine paratuberculosis.     

Estimating soil hydraulic conductivity using different data-driven models of ANN,GMDH and GMDH-HS

The saturated hydraulic conductivity (\(K_{\text{s}}\)) is one of the important soil hydraulic properties which plays a significant role in developing flow transport models and irrigation and drainage practices. In this research, artificial neural networks approaches, group method of data handling (GMDH) model and a hybrid intelligent model based on combination of GMDH and harmony search (HS) model (GMDH-HS) were developed to estimate \(K_{\text{s}}\) based on 151 field samples collected from the northeast of Iran. Eleven topsoil properties were used as input parameters to estimate \(K_{\text{s}}\). The five quantitative standard statistical performance evaluation measures, i.e., coefficient of efficiency, root-mean-square error, mean square relative error, mean absolute percentage error and relative bias, were employed to evaluate the performance of various developed models. Statistical results indicated that the best performance can be obtained by GMDH-HS in terms of different evaluated criteria during the training and testing datasets for \(K_{\text{s}}\) estimation.     

Candidate gene polymorphisms (BoIFNG, TLR4, SLC11A1) as risk factors for paratuberculosis infection in cattle

Paratuberculosis (Johne's disease) imposes a significant problem to the world dairy and beef industries and today is considered a potential zoonosis. The disease is caused by Mycobacterium avium subsp. paratuberculosis and is characterized by progressive weight loss and profuse diarrhoea. Susceptibility to infection is suspected to have a genetic component, and moderated values for heritability of infection have been reported. Interferon gamma is an inducible cytokine with a crucial role in the innate host response to intracellular bacteria. Toll-like receptors are trans-membrane structures responsible for coordination of innate and adaptive immune responses. The solute carrier family 11 member 1 (SLC11A1, formerly NRAMP1) gene plays an important role in innate immunity, preventing bacterial growth in macrophages during the initial stages of infection. The objective of this candidate gene case–control study was to characterize the distribution of polymorphisms in three candidate genes related to the immune function; interferon gamma (BoIFNG), toll-like receptor 4 (TLR4), and SLC11A1 genes and to test their role as potential risk factors for paratuberculosis infection in cattle. The statistical analysis demonstrated significant differences in allelic frequencies between cases and controls for BoIFNG-SNP₁2781 and SLC11A1 microsatellites, indicating a significant association between infection and variant alleles. In the analysis of genotypes, a significant association was also found between infection status and BoIFNG-SNP₁2781 and SLC11A1-275-279-281 microsatellites. However, when variables such as breed and age were included in the multivariate logistic regression analysis, a tendency toward statistical significance for the effect of polymorphisms in the odds of infection was only found for alleles SLC11A1-275 and 279.     

Cloprostenol injection improves reproductive characteristics in low libido Iranian Holstein bulls

The objective of this study was to determine whether injections of Cloprostenol (PGF2alpha analog) in low libido Holstein bulls can improve seminal characteristics and libido. Ten low libido Iranian Holstein bulls were randomly assigned to two groups and received; (1) 250 microg ofCloprostenol (n=5) or (2) 2 mL of saline (n=5) 30 min prior to collection of semen 2 days per week for 2 months. Reaction time was significantly decreased in treatment group. Duration of ejaculation was significantly increased in treatment group. Semen volume and sperm concentration were greater in treated bulls in compare with controls. The percentage of morphologically normal sperm cells, percentage of live sperm cells, motile sperm cells and post-thaw motile sperm cells were not affected by treatment. Plasma testosterone concentrations were increased approximately two fold after Cloprostenol injection. Overall, injection of Cloprostenol at this dosage and frequency increased libido, semen volume, sperm concentration and plasma testosterone concentration in low libido Holstein bulls.     

Investigation formaize inbred lines resistance to <Emphasis Type="Italic">Maize Rough Dwarf Virus</Emphasis>(MRDV)

Maize rough dwarf virus (MRDV) is the most important disease affecting maize growth in Iran. In the present study, the putative resistance capacity of 35 maize inbred lines against the causal agents of MRDVwas studied under natural field infection in 2010 and 2011. The viral transmitter was a plant hopper known as Laodelphax steriatellus. Early sowing provided suitable temperatures for vector propagation and transmission and therefore natural infection under field conditions. Sowing single rows of SC704 as vector spreader between every five rows of inbred lines caused adequate vector propagation and viral transmission. This shows that viral infection was sufficient and possible resistance was linked to viral resistance, not failure, in vector transmission. In principal component biplot, plant height vector had wide angles with the vectors for disease severity index and MRDV incidence that showed the negative association of plant height with MRDV disease. The percentage of natural infection to MRDV in susceptible control(SC704) was about 64%. The genotypes A679, K3547/3, K3545/6, K3653/2, and B84 were more susceptible to MRDV. Only the line K3640/3 had low disease incidence and severity and it can be considered as resistant for possible use in genetic studies. Results showed that an early sowing of maize in temperate regions increases the chance of transmitting viruses via their vector.