Survival and vitality of Gremmeniella abietina on Pinus sylvestris slash in northern Sweden

Survival and vitality of Gremmeniella abietina on Pinus sylvestris slash was studied in northern Sweden during 2003 and 2004. Once a month between September 2003 and April 2004, two to three trees were cut down and debranched. Shoots with pycnidia were sampled at the felling date and then at every consecutive month. The percentage of germinated conidia from each shoot was calculated after 24, 48 and 72 h incubation. The vitality of G. abietina pycnidia in the slash remained high the whole period. Intact pycnidia were found on slash several months after the time of conidial sporulation, which indicates that new pycnidia may be produced on dead pine branches. Sampling of shoots from slash on 13‐ to 18‐month‐old clear‐cuts showed conidial germination capacity as high as in pycnidia collected in fresh slash. Due to survival of G. abietina in slash it is recommended to postpone planting of P. sylvestris seedlings in northern boreal areas to the third vegetation period after sanitary clear‐cuts.     

Gremmeniella-infected Pinus contorta as raw material in the production of kraft pulp

Pinus contorta, logs with occluded cankers caused by the pathogen Gremmeniella abietina, as well as logs from unaffected trees were sampled from a 23-year-old plantation in Sweden and compared in terms of their paper properties. Damaged wood gave kraft pulp with poor paper properties: it required a larger amount of beating energy and resulted in paper with low tear strength, air permeability, tensile stiffness, burst strength, and poor light-scattering properties. However, small amounts of damaged wood mixed in with a large amount of healthy wood can pass almost unnoticed. The use of trees with a larger content of damaged wood will lead to serious processing problems and give a pulp with poor paper properties. Thus, wood damaged by Gremmeniella should be sorted out and classed as low-grade raw material.     

Cardiac arrhythmias and electrolyte disturbances in colic horses

Background

Despite increased focus on cardiac arrhythmias in horses, the nature and prevalence is still poorly described. Case reports suggest that arrhythmias occurring secondary to systemic disease are seen more commonly in the clinic than arrhythmias caused by cardiac disease. The aim of this study was to investigate the prevalence of arrhythmias in colic horses referred for hospital treatment. Associations between electrolyte disturbances and arrhythmias were also investigated.The study population consisted of eight control horses and 22 referred colic horses. A Holter electrocardiography (ECG) was recorded during the first 24 hours of admission. The ECG’s were analysed by a software program followed by manual visual inspection. Arrhythmias registered included second degree atrioventricular (AV) blocks, supraventricular premature complexes (SVPCs), and ventricular premature complexes (VPCs). Blood was collected at admission and again between 12 and 24 hours after ECG was applied, and analysed for concentrations of potassium, sodium, ionised calcium, chloride, glucose, and L-lactate.

Results

Heart rate was 37.4 ± 3.7 bpm in the control group, and 51.6 ± 11.8 bpm, in the colic group, which was significantly different (P < 0.0001). AV blocks and SVPCs were found in both groups, however only colic horses showed VPCs. No significant difference between the two groups was found for AV blocks, SVPCs, and VPCs (P = 0.08 - 0.76). The mean levels of potassium, sodium, ionized calcium, and chloride were significantly lower in the colic group compared to the control group at admission. Mean levels of glucose and L-lactate were significantly elevated in the colic group (P < 0.05).

Conclusions

This study describes prevalence of cardiac arrhythmias and electrolytes concentrations in colic horses compared to healthy controls. Although we only observed VPCs in the colic horses, no significant differences between colic horses and controls were found. Despite the colic horses having electrolyte changes at admission no correlation was found between the electrolyte disturbances and cardiac arrhythmias. Although no clear conclusions can be drawn from the present study, the results indicate that relatively mild colic per se is not pro-arrhythmogenic, whereas severe colic probably are more likely to result in ventricular arrhythmia.     

Empirical predictions of plant material C and N mineralization patterns from near infrared spectroscopy, stepwise chemical digestion and C/N ratios

Prediction of carbon (C) and nitrogen (N) mineralization patterns of plant litter is desirable for both agronomic and environmental reasons. Near infrared reflectance (NIR) spectroscopy has recently been introduced in decomposition studies to characterize biochemical composition. The purpose of the current study was to use empirical techniques to predict C and N mineralization patterns of a wide range of plant materials incubated under controlled temperature and moisture conditions. We hypothesized that the richness of information in the NIR spectra would considerably improve predictions compared to traditional stepwise chemical digestion (SCD) or C/N ratios. Initially, we fitted a number of empirical functions to the observed C and N mineralization patterns. The best functions fitted with R²=0.990 and 0.949 to C and N, respectively. The fractions of C and N mineralized at different points in time were then either predicted directly with regression functions or indirectly by prediction of the parameters of the empirical functions fitted to incubation data. In both cases, partial least squares (PLS) regressions were used and predictions were validated by cross-validations. We found that the NIR spectra (best R²=0.925) were able to predict C mineralization patterns marginally better than the SCD fractions (best R²=0.911), but considerably better than the C/N ratios (best R²=0.851). In contrast, N mineralization was better predicted by SCD fractions (best R²=0.533) than the C/N ratio (best R²=0.497), which was better than NIR predictions (best R²=0.446). Although the predictions with the NIR spectra were only slightly better for C and worse for N mineralization compared to SCD fractions, NIR spectroscopy still holds advantages, as it is a much less laborious and cheaper analytical method. Furthermore, exploration of the applications of NIR spectroscopy in decomposition studies has only just begun, and offers new ways to gain insights into the decomposition process.     

Bias in Peer Review of Organic Farming Grant Applications

Peer reviews of 84 organic farming grant applications from Sweden were analyzed to determine whether the reviewers’ affiliation to one of two types of agriculture (i.e., organic and conventional) influenced their reviews. Fifteen reviewers were divided into three groups: (1) scientists with experience in organic farming research; (2) scientists with no experience in organic farming research; and (3) users of organic farming research. The two groups of scientists assessed the societal relevance and scientific quality of the grant applications based on three criteria (i.e., presentation, methodology, qualifications), whereas the user group only assessed societal relevance. The analysis showed that the two groups of scientists provided very different reviews. Scientist reviewers with experience in organic farming research agreed more with the user group on research relevance than did scientist reviewers without such experience, and the assessment of relevance was closely correlated to the assessment of scientific quality within both scientific groups. As both scientific groups did not clearly distinguish between societal relevance and scientific quality, the idea of an objective science is challenged. The contextual values associated with the norms of good agriculture were not clearly distinguished from the constitutive values of science associated with the traditional norms of good science. This raises the question of whether organic and conventional grant applications should be mixed for review regardless of the reviewers.     

Conservation policies and planning under climate change

Biodiversity conservation policies focus on securing the survival of species and habitats according to their current distribution. This basic premise may be inappropriate for halting biodiversity decline under the dynamic changes caused by climate change. This study explores a dynamic spatial conservation prioritization problem where climate change gradually changes the future habitat suitability of a site’ current species. This has implications for survival probability, as well as for species that potentially immigrate to the site. The problem is explored using a set of heuristics for both of two policy objectives focusing on (1) the protection on current (native) species, and (2) all species, including immigrating species. The trade-offs between the protection of native species versus all species is illustrated. The study shows that the development of prediction models of future species distributions as the basis of decision rules can be crucial for ensuring the effectiveness of conservation plans. Finally, it is discussed how more adaptive strategies, that allow for the redirection of resources from protected sites to privately-owned sites, may increase the effectiveness of the conservation networks. Climate change induced shifts in the suitability of habitats for species may increase the value of such adaptive strategies, the benefit decreasing with increasing migration probabilities and species distribution dynamics.     

Structure of the exon junction core complex with a trapped DEAD-box ATPase bound to RNA

In higher eukaryotes, a multiprotein exon junction complex is deposited on spliced messenger RNAs. The complex is organized around a stable core, which serves as a binding platform for numerous factors that influence messenger RNA function. Here, we present the crystal structure of a tetrameric exon junction core complex containing the DEAD-box adenosine triphosphatase (ATPase) eukaryotic initiation factor 4AIII (eIF4AIII) bound to an ATP analog, MAGOH, Y14, a fragment of MLN51, and a polyuracil mRNA mimic. eIF4AIII interacts with the phosphate-ribose backbone of six consecutive nucleotides and prevents part of the bound RNA from being double stranded. The MAGOH and Y14 subunits lock eIF4AIII in a prehydrolysis state, and activation of the ATPase probably requires only modest conformational changes in eIF4AIII motif I.     

Streptococcus equi subsp. zooepidemicus isolates from equine infectious endometritis belong to a distinct genetic group

Streptococcus equi subsp. zooepidemicus is the pathogen most commonly isolated from the uterus of mares. S. zooepidemicus is an opportunistic pathogen and part of the resident flora in the caudal reproductive tract. The aim of this study was to investigate whether a genotypically distinct subpopulation of S. zooepidemicus is associated with endometritis in the mare, by genotyping and comparing uterine S. zooepidemicus strains with isolates from the vagina and clitoral fossa. Mares with (n = 18) or without (n = 11) clinical symptoms of endometritis were included. Uterine samples were obtained using a guarded endometrial biopsy punch, whereas a swab was used to recover samples from the cranial vagina and the clitoral fossa. If S. zooepidemicus was present, up to three colonies were selected from each anatomical location (max. 9 isolates per mare). Bacterial isolates were characterized by pulsed-field gel electrophoresis (PFGE) and multilocus sequence typing (MLST). S. zooepidemicus was isolated from the endometrium of 12 mares. A total of 88 isolates were analyzed by PFGE: 31 from the endometrium, 26 from the cranial vagina and 31 isolates from the clitoral fossa. For MLST 21 isolates were chosen. Results demonstrated a higher genetic similarity of the isolates obtained from infectious endometritis compared to isolates obtained from the caudal reproductive tract. In conclusion, we demonstrate for the first time that a genetically distinct group of S. zooepidemicus is associated with infectious endometritis in the mare.     

Evidence of cormorant‐induced mortality,disparate migration strategies and repeatable circadian rhythm in the endangered North Sea houting (Coregonus oxyrinchus): A telemetry study mapping the postspawning migration

Life history theory predicts a trade‐off between migration and residency where migration is favoured when it infers elevated fitness. Although migration to more favourable environments may offer higher growth rates, migrants often experience increased mortality due to predation. Here, we investigated mortality and migration behaviour of the North Sea houting (Coregonus oxyrinchus), an anadromous salmonid endemic to the Wadden Sea. We used acoustic telemetry to map the migration of the only remaining indigenous population by applying stationary hydrophones combined with manual tracking. Data suggested a total mortality of 26%, with 30% of the total mortality attributed to predation by great cormorants (Phalacrocorax carbo sinensis), highlighting that North Sea houting conservation could be jeopardised by increased cormorant predation. Risk of cormorant predation was size‐dependent, with smaller fish suffering higher risk of predation. The study found North Sea houting to exhibit disparate migration strategies and identified a lentic area in the estuary as an important habitat. Two newly established artificial lakes within the river system significantly reduced the migration speeds, possibly indicating constrained navigation through the lakes. The migration into the Wadden Sea correlated with temperature perhaps indicating osmoregulatory constraints of sea entry. Unlike many salmonid species, migration occurred both day and night. Moreover, fish exhibited repeatable individual differences in diel activity patterns, suggesting that individuals differ consistently in their migratory activity throughout the 24‐hr period. Our study provides novel information on salmonid migration, which is crucial for the development of science‐based conservation strategies.