Variation in Heterobasidion annosum detected by Random Amplified Polymorphic DNAs

The production of Random Amplified Polymorphic DNAs (RAPDs) by Polymerase Chain Reaction (PCR) was used to detect variation in the isolates of Heterobasidion annosum with various geographical origins. Specific RAPD products were detected for each of the intersterility groups: the European S, F, P and the North American S group. There was considerably more polymorphism found among European S than P isolates. The analysis of RAPDs was shown to be a simple and a fast way to generate DNA markers specific to the previously established intersterility groups and thus useful for diagnostic purposes.     

The impact of small-scale design interventions on the behaviour patterns of the users of an urban wasteland

Urban derelict space can form a valuable complementary element to the formal green spaces of a city: wastelands are often biologically diverse and their unregulated status can provoke innovative spatial activities by a wide range of users. Using the case of an urban brownfield in Tallinn, Estonia, this paper examines how such a space is used and evaluates the magnitude of the impact of minor design interventions – so-called urban acupuncture – on the activities carried out by the users. The study used field observations and behaviour mapping to compare the spatial pattern of the users before and after small design interventions. Although there was widespread use beforehand there was both an increase in use and a different pattern afterwards, which was clearly detectable from the composite behaviour maps of both arrangements, where users follow the properties of the particular environment. The small improvements tested showed the largest effect on the female and the older user groups, raising the number of overall visits and increasing the occurrence of active behaviour almost five times. The research demonstrates that small, inexpensive and possibly temporary interventions can have a major positive effect.     

Genetic basis of penicillin resistance of S. aureus isolated in bovine mastitis

Background

The blaZ gene encoding penicillin resistance can be located either chromosomally or on plasmids. The aim of this study was to investigate the genetic relationships and to determine the location of the blaZ gene in S. aureus isolated in bovine mastitis in Finland and Sweden.

Methods

Seventy-eight β-lactamase positive S. aureus isolates from bovine mastitis (34 from Finland and 44 from Sweden) were included in the study. The localization of blaZ gene was determined by Southern blotting. The blaZ genes of the isolates were sequenced and the sequences were translated to beta-lactamase proteins and further grouped as different protein signatures. The isolates and, as control, 33 Swedish and 36 Finnish beta-lactamase negative isolates were typed with pulsed-field gel electrophoresis (PFGE).

Results

In 26 out of 34 Finnish isolates (76.5%) and in 25 out of 44 Swedish isolates (56.8%) the blaZ gene was localized on a plasmid. Six different protein signatures were found. One signature was found only in four Swedish isolates, but all other signatures were found both in Finnish and Swedish isolates. The PFGE results revealed a diversity of S. aureus clones. The protein signatures were not clearly associated with certain pulsotypes.

Conclusions

The plasmid location of the blaZ gene was not statistically significantly more common in Finland than in Sweden, and hence does not explain the higher proportion of penicillin-resistant isolates of S. aureus causing bovine mastitis in Finland compared to Sweden.     

Spatial eco-evolutionary feedback in plant-pathogen interactions

In recent years the potential for evolutionary change to drive ecological dynamics, and vice versa, has been widely recognized. However, the convincing examples of eco-evolutionary dynamics mainly stem from highly artificial experimental systems, with conspicuously few examples contributed by field systems. While rarely considered in the eco-evolutionary literature, the gene-for-gene hypothesis inherently recognizes the tight link between evolutionary and ecological dynamics. The boom-and-bust dynamics of some agricultural pathogens are an extreme demonstration of this. In this perspective, we place plant-pathogen systems in a spatial eco-evolutionary framework, which recognizes that ecology and evolution are tightly linked, take place at the same time scale and are strongly influenced by spatial structure. Specifically, we: i) exemplify how the ecological process of dispersal modifies rapid local coevolutionary dynamics and thereby shapes spatial variation in resistance, infectivity, and local adaptation; and ii) illustrate how the outcome of coevolution (spatial distribution in resistance, infectivity and local adaptation) drives ecological metapopulation processes. Overall, we conclude that both agricultural and wild pathosystems provide a unique illustration of the high relevance of spatial eco-evolutionary feedback in understanding species interactions.     

Occurrence and characterization of methicillin-resistant staphylococci from bovine mastitis milk samples in Finland

Background

Methicillin-resistant staphylococci (MRS) are increasingly being isolated in bovine mastitis. The aim of our study was to evaluate the occurrence of MRS in Finnish mastitis milk samples and characterize the MRS isolates using molecular methods.

Results

Methicillin-resistant S. aureus (MRSA) was a rare finding in bovine mastitis in Finland. Only two out of 135 (1.5%) S. aureus isolates were positive for mec genes. One of these carried mecA and was of spa type t172, SCCmec type IV and ST375, and the other harboured mecC, being spa type t3256, and ST130. MRSA ST375 is common among human MRSA isolates in Finland, but this is the first report in the country of bovine mecC MRSA. In coagulase-negative staphylococci (CoNS) originating from bovine mastitis, methicillin resistance was more common. In the two CoNS collections studied, 5.2% (17/324) and 1.8% (2/110) of the isolates were mecA positive. Eighteen of these were methicillin-resistant S. epidermidis (MRSE), which were divided into 6 separate PFGE clusters. One pulsotype was detected in different parts of the country, indicating clonal spread. Most MRSE (13/18) were of SCCmec type IV, one was of type V and four were non-typeable. Comparison with a human staphylococcal database indicated that bovine MRSE strains were not closely related to human MRSE isolates.

Conclusions

The occurrence of MRS, especially MRSA, in bovine mastitis in Finland was low. Most methicillin-resistant bovine CoNS are MRSE, and we found evidence of a bovine MRSE strain that may spread clonally. This is the first report of a Finnish bovine isolate of MRSA_mecC ST130. The study provides a baseline for further MRS monitoring.     

Retention patches maintain diversity of epiphytic and epixylic indicator lichens more effectively than solitary trees

The effectiveness of retention trees and patches in preserving diversity of nine epiphytic and epixylic old-growth forest lichens was studied in north boreal spruce forests in Finland. We compared (1) 7–8-year-old retention cuts, with at least 5–10 living or dead retention trees per hectare, (2) 10–12-year-old clear-cuts, with some scattered living and dead retention trees on the sites, (3) old-growth spruce forests, and (4) 7-8-year-old retention patches (0.06–0.45?ha) representing the original tree species composition of old-growth forests. The occurrence of indicator lichens was studied on 150 deciduous trees and snags in each forest category. The species richness was significantly higher in old-growth forests than in the clear-cuts and retention cuts, but did not differ between old-growth forests and retention patches. Only three species were found in clear-cuts and two in retention cuts. Foliose cyanolichens Leptogium saturninum and Nephroma bellum thrived on solitary retention trees, whereas humidity-requiring pin lichens from the genus Chaenotheca were found only in old-growth forests and retention patches. Our results suggest that the ability of epiphytic and epixylic species to survive on retained trees depends on several factors: (1) substrate quality (tree species, tree type and diameter of a tree), (2) environmental factors (e.g. humidity, slope exposition), and (3) morphological and physiological characteristics of species. Besides of substrate trees, the retained conifers (esp. spruce) seem to be important in retention patches to provide the shading necessary to maintain humidity.     

Polypore diversity in the herb-rich woodland key habitats of Koli National Park in eastern Finland

Species diversity of polypores (Basidiomycetes) was compared between woodland key habitats (WKHs) and old-growth forest controls in boreal forests in eastern Finland. WKHs, which were set aside for their rich vascular plant flora, turned out not to be hot spots for the species richness of polypores, nor did their species composition represent the overall species richness of the area. Differences in the total volume of CWD, tree species composition and several CWD qualities were reflected as differences in the species assemblages between the groups. The results indicated that only a fraction of the overall polypore diversity was represented in the small-size WKHs (<0.5 ha), and the protection of red-listed and indicator polypores in WKHs was random. However, rare old-growth forest indicators were found even in small-size WKHs, if the CWD quality was appropriate for them. Nevertheless, our study does not answer the question whether the occurrences of rare and red-listed species will survive in small-size WKHs surrounded by altered environments such as clear-cuts, because our study sites were located in undisturbed areas. The results stress the importance to protect typical old-growth forest patches with high CWD volume and quality in boreal forests.