Distribution of ASFV antigens in pig tissues experimentally infected with two different Spanish virus isolates.

Lymph nodes, spleen, liver, lung and kidney obtained from pigs experimentally infected with two African Swine Fever Virus (ASFV) isolates of differing virulence were fixed by perfusion with glutaraldehyde and embedded in paraffin. An immunoperoxidase technique using a polyclonal anti-ASFV serum was performed on tissue sections in order to detect ASFV antigen. The distribution of ASFV antigen in such infected organs is shown and the differences between both infections compared and discussed. Monocytes, macrophages, hepatocytes, endothelial cells, neutrophils and epithelial cells were found to contain ASFV antigens.     

Laboratory diagnosis and disease occurrence in the current African swine fever eradication program in Spain, 1989–1991

The purpose of this study was to determine the rate of decline and geographical distribution by municipality of clinical and subclinical African swine fever (ASF) in the affected areas of Spain. A second aim was to evaluate the performance of diagnostic tests in the Spanish ASF eradication program. Clinical outbreaks were confirmed using both the direct and indirect immunofluorescence test (and if both were negative, by the hemabsorption test). The serological status of swine was determined by an enzyme-linked immunosorbent assay (ELISA) and suspect serum samples were confirmed by the immunoblot assay.

The number of clinical outbreaks (herds) of ASF for 1989, 1990 and 1991 was 170, 347 and 207, respectively. The numbers of municipalities within each affected province experiencing acute outbreaks for the same time periods were 49, 69 and 48, respectively. Serologically diagnosed animals positive for ASF were 1.1% of animals tested in 1989, 0.5% in 1990 and 0.8% in 1991. The corresponding positive predictive values of the standard ELISA test used were 99.0, 97.9 and 98.8, respectively. Similarly, the number of municipalities within each affected province experiencing serologically positive subclinically infected animals was 269, 178 and 147 for each of the years 1989, 1990 and 1991, respectively.     

Effects of cultivar,pelleting and enzyme addition on nutritive value of barley in poultry diets

1. The effect of pelleting process and Trichoderma viride enzymes (TVE) addition on apparent metabolisable energy, corrected for nitrogen balance (AMEn) and on productive value of practical diets containing 40 and 45% of three different barley cultivars and one wheat were studied in poultry.

2. The effect of the pelleting process on AMEn was inconsistent and was dependent on the cereal included and the addition of enzyme.

3. The growth trial showed a significant effect of enzyme addition to pelleted diets over the whole growth period (0 to 42 d). Addition of TVE improved weight gain and food efficiency by 1.3% and 2.9%, respectively and decreased food intake by 1.6% between 0 and 22 d. In the finisher period (23 to 42 d) TVE improved efficiency by 2.8% and reduced food intake by 2.9%.

4. The incidence of sticky droppings was related to the viscosity of barley used, and enzyme supplementation reduced it. Both pelleting and enzyme addition increased dry matter content of excreta.

5. At the end of the experiment, 14 animals per treatment were slaughtered and carcass yield, viscera weight and abdominal fat were determined.     

Can carbon sequestration markets benefit low-income producers in semi-arid Africa? Potentials and challenges

The Clean Development Mechanism (CDM) of the Kyoto Protocol of the United Nations Framework Convention on Climate Change allows a country that emits C above agreed-upon limits to purchase C offsets from an entity that uses biological means to absorb or reduce greenhouse emissions. The CDM is currently offered for afforestation and reforestation projects, but may apply subsequently to sequestration in agricultural soils. Additionally, markets outside of the Protocol are developing for soil C sequestration.     

Asterosaponins: Structures,Taxonomic Distribution,Biogenesis and Biological Activities

Asterosaponins are a class of steroid oligoglycosides isolated from starfish with characteristic structures and diverse biological activities. In this review, we have attempted to combine the most important data concerning asterosaponins and give a list of these secondary metabolites with their structural peculiarities. The purpose of this review is to provide a brief but as complete as possible principal information about their chemical structures, taxonomic distribution in the marine environment, distribution in different geographical areas and depths, some properties, biological activities, and functions. Some other rare steroid metabolites from starfish, closely related in structures and probably biogenesis to asterosaponins, are also discussed.     

Soil crusting and infiltration on steep slopes in northern Thailand

Predicting the rate at which rain infiltrates on steep slopes is very uncertain. There is no consistent information in the literature. We have therefore related infiltrability to slope gradient under field conditions by experimenting on a gravelly loamy soil occupying the upper half of a cultivated convex hill in northern Thailand. Fifteen 1 m × 1 m plots with slope gradients ranging from 16 to 63% were established, and simulated rain was allowed to fall on them at controlled rates and for fixed times. We obtained the following results. The surface fell 0.4–7.2 mm due to compaction and soil loss. The proportions of crust (0–40%) and embedded gravel (10–60%), the runoff coefficient (0.05–0.78 mm mm^?1), the mean sediment concentrations (0–5.6 g l^?1), and soil detachment (10–313 g m^?2) were more pronounced on the gentle slopes than on the steep ones. The steady final infiltration rate (1–107 mm hour^?1) increased sharply with increasing slope gradient. Microaggregates tended to behave like sand and become tightly packed on gentle slopes (packing crust). These results suggest that the vertical component of kinetic energy, which is greater on gentle slopes, has a dominant role. Nevertheless, the differences in compaction and in sediment concentration could not be ascribed to the vertical component of kinetic energy alone. On steep slopes the horizontal component of the kinetic energy is transformed into shear stress, hampering the development of crusts so that water can still infiltrate. On steeper slopes, the water film was thinner, thereby limiting the role of splash. We conclude that the relationship between slope gradient and infiltrability depends on the nature of the soil and must be examined in the light of surface crusting processes.     

Large-scale deployment of a rice 6 K SNP array for genetics and breeding applications

Background

Fixed arrays of single nucleotide polymorphism (SNP) markers have advantages over reduced representation sequencing in their ease of data analysis, consistently higher call rates, and rapid turnaround times. A 6 K SNP array represents a cost-benefit “sweet spot” for routine genetics and breeding applications in rice. Selection of informative SNPs across species and subpopulations during chip design is essential to obtain useful polymorphism rates for target germplasm groups. This paper summarizes results from large-scale deployment of an Illumina 6 K SNP array for rice.

Results

Design of the Illumina Infinium 6 K SNP chip for rice, referred to as the Cornell_6K_Array_Infinium_Rice (C6AIR), includes 4429 SNPs from re-sequencing data and 1571 SNP markers from previous BeadXpress 384-SNP sets, selected based on polymorphism rate and allele frequency within and between target germplasm groups. Of the 6000 attempted bead types, 5274 passed Illumina’s production quality control. The C6AIR was widely deployed at the International Rice Research Institute (IRRI) for genetic diversity analysis, QTL mapping, and tracking introgressions and was intensively used at Cornell University for QTL analysis and developing libraries of interspecific chromosome segment substitution lines (CSSLs) between O. sativa and diverse accessions of O. rufipogon or O. meridionalis. Collectively, the array was used to genotype over 40,000 rice samples. A set of 4606 SNP markers was used to provide high quality data for O. sativa germplasm, while a slightly expanded set of 4940 SNPs was used for O. sativa X O. rufipogon populations. Biparental polymorphism rates were generally between 1900 and 2500 well-distributed SNP markers for indica x japonica or interspecific populations and between 1300 and 1500 markers for crosses within indica, while polymorphism rates were lower for pairwise crosses within U.S. tropical japonica germplasm. Recently, a second-generation array containing ~7000 SNP markers, referred to as the C7AIR, was designed by removing poor-performing SNPs from the C6AIR and adding markers selected to increase the utility of the array for elite tropical japonica material.

Conclusions

The C6AIR has been successfully used to generate rapid and high-quality genotype data for diverse genetics and breeding applications in rice, and provides the basis for an optimized design in the C7AIR.

     

Suspended sediment budget and intra-event sediment dynamics of a small glaciated mountainous catchment in the Northern Caucasus

Journal of Soils and Sediments - The sediment dynamics of (peri-)glacial catchments can be highly variable and complex. Understanding these dynamics and their underlying causes is not only of...     

Genetic Structure of Peruvian Populations of Phytophthora infestans

ABSTRACT Isolates of the late blight pathogen Phytophthora infestans (n = 327) from the central to southern Peruvian Andes were systematically collected in 1997 to 1999 and analyzed to determine the pathogen's population structure at its host's center of diversity. No isolates of the A2 mating type were detected. Cluster analysis of DNA fingerprinting data indicated that the collection consisted of five major groups that were interpreted to be clonal lineages. Two of the lineages (US-1 and EC-1) have been previously described, and three (PE-3, 5, and 6) are described here for the first time. Collections from three areas in the central Peruvian Andes, including two key sites used in an international potato breeding program, consisted of isolates of the EC-1 lineage, which has been reported to dominate the pathogen population in Andean countries to the north of Peru. The collections from Cusco and Puno were more diverse. More than one lineage was detected in 10 of the 20 fields sampled in Cusco. Data on virulence, metalaxyl sensitivity, and band data for allozymes, mitochondrial DNA, and ipiB1 suggested that PE-3 may have been produced through recombination events between US-1 and EC-1. Restriction fragment length polymorphism and amplified fragment length polymorphism marker data were not consistent with this hypothesis.