Photosynthesis of a scots pine shoot: simulation of the irradiance distribution and photosynthesis of a shoot in different radiation fields

Using a model of shoot geometry the distribution of irradiance at the needle surface area of a shoot in different radiation conditions is simulated and shoot photosynthesis calculated. It is shown that the distribution of irradiance is very sensitive to radiation field geometry, affecting the efficiency of the utilization of radiant energy in photosynthesis. As a result, the photosynthetic response of a shoot in natural conditions is, for instance, highly dependent on the proportions of direct and diffuse solar radiation, being higher the greater is the proportion of diffuse radiation.     

Pelger-Hu?t anomaly in cats

Pelger-Hu?t anomaly was diagnosed in a young male cat on the basis of persistent nuclear hyposegmentation of blood granulocytes, absence of clinical disease or feline leukemia virus infection, and demonstration of genetic transmission of the anomaly. Neutrophils, eosinophils, basophils, and monocytes had significantly less nuclear segmentation when compared to similar leukocyte types from a control cat. On smears of bone marrow, megakaryocytes also appeared hyposegmented. A test mating with an unaffected queen produced a litter of five kittens (three males, two females). One male and one female kitten had the Pelger-Hu?t trait on examination of blood smears. Autosomal dominant transmission of this anomaly is suspected based on these findings.     

A novel epidemiological model to better understand and predict the observed seasonal spread of Pestivirus in Pyrenean chamois populations

Seasonal variations in individual contacts give rise to a complex interplay between host demography and pathogen transmission. This is particularly true for wild populations, which highly depend on their natural habitat. These seasonal cycles induce variations in pathogen transmission. The seasonality of these biological processes should therefore be considered to better represent and predict pathogen spread. In this study, we sought to better understand how the seasonality of both the demography and social contacts of a mountain ungulate population impacts the spread of a pestivirus within, and the dynamics of, this population. We propose a mathematical model to represent this complex biological system. The pestivirus can be transmitted both horizontally through direct contact and vertically in utero. Vertical transmission leads to abortion or to the birth of persistently infected animals with a short life expectancy. Horizontal transmission involves a complex dynamics because of seasonal variations in contact among sexes and age classes. We performed a sensitivity analysis that identified transmission rates and disease-related mortality as key parameters. We then used data from a long-term demographic and epidemiological survey of the studied population to estimate these mostly unknown epidemiological parameters. Our model adequately represents the system dynamics, observations and model predictions showing similar seasonal patterns. We show that the virus has a significant impact on population dynamics, and that persistently infected animals play a major role in the epidemic dynamics. Modeling the seasonal dynamics allowed us to obtain realistic prediction and to identify key parameters of transmission.

Electronic supplementary material

The online version of this article (doi:10.1186/s13567-015-0218-8) contains supplementary material, which is available to authorized users.     

Phosphatase activity, microbial phosphorus, and fine root growth in forest soils in the Sierra de Gata, western central Spain

Acid phosphatase activity (APA), labile P fractions and fine root growth were studied in an oak (Quercus pyrenaica Willd.) forest in the Sierra de Gata, in western central Spain. Soils in the region are acid and rich in organic matter, with low levels of extractable inorganic P but with a high proportion of organic P. In such soils, the activity of phosphatase enzymes is likely to be important for the control of P mineralization and P cycling and, consequently, can affect the availability of P for plant uptake. The biomass of fine roots was about 25-fold that of leaf litter, demonstrating a high allocation of C resources to the root system in order to compensate for a low availability of soil nutrients. The study compared plots fertilized with triple superphosphate (100 kg P ha^-1) to control (unfertilized) plots. Fertilizer application had no significant effect on APA and fine root density; however, there were significant differences in available and microbial P. Spatial and seasonal variations in the APA were related to plant root density and biotic demand. Seasonal differences in the APA may also be the consequence of changes in the amount of hydrolysable organic substrates at different times of the year.     

A new approach for modelling vertical stress distribution at the soil/tyre interface to predict the compaction of cultivated soils by using the PLAXIS code

Soil compaction by agricultural machines can have adverse effects on crop production and the environment. Different models based on the Finite Element Method have been proposed to calculate soil compaction intensity as a function of vehicle and soil properties. One problem when modelling soil compaction due to traffic is the estimation of vertical stress distribution at the soil surface, as the vertical stress is inhomogeneous (non-uniform) and depends on soil and tyre properties. However, uniform stress distribution at the soil/tyre interface is used to predict the compaction of cultivated soils in most FEM compaction models. We propose a new approach to numerically model vertical stress distribution perpendicular to the driving direction at the soil/tyre interface, employing the FEM models of PLAXIS code. The approach consists of a beam (characterised by its geometric dimensions and flexural rigidity) introduced at the soil surface and loaded with a uniform stress with the aim to simulate the action of a wheel at the soil surface. Different shapes of stress distribution are then obtained numerically at the soil surface by varying the flexural rigidity of the beam and the mechanical parameters of the soil. PLAXIS simulations show that the soil type (soil texture) modifies the shape of the stress distribution at the edges of the contact interface: a parabolic form is obtained for sand, whereas a U-shaped is obtained for clay. The flexural rigidity of the beam changes the shape of distribution which varies from a homogenous (uniform) to an inhomogeneous distribution (parabolic or U-shaped distribution). These results agree with the measurements of stress distributions for different soils in the literature. We compared simulations of bulk density using PLAXIS to measurement data from compaction tests on a loamy soil. The results show that simulations are improved when using a U-shaped vertical stress distribution which replaces a homogenous one. Therefore, the use of a beam (cylinder) with various flexural rigidities at the soil surface can be used to generate the appropriate distribution of vertical stress for soil compaction modelling during traffic.     

Extracutaneous viral inclusions in psittacine beak and feather disease

Thirty-five birds that died with naturally acquired psittacine beak and feather disease (PBFD) were necropsied to identify extracutaneous viral inclusions. Inclusions were found in various tissue sections from 34 of 35 birds. By immunoperoxidase staining, intranuclear and intracytoplasmic inclusion bodies were shown to contain PBFD viral antigen. Inclusion-bearing lesions were widely disseminated but often closely associated with the alimentary tract. Lesions within the palate, esophagus, crop, intestine, bursa of Fabricius, and liver probably serve as sources for viral shedding into the feces.