Prioritising sites for pollinators in a fragmented coastal nectar habitat network in Western Europe

Landscape Ecology - Habitat loss and fragmentation contribute significantly to pollinator decline and biodiversity loss globally. Conserving high quality habitats whilst restoring and connecting...     

Ancient Polyploidy and Modern Crop Plants

The growing set of fully-sequenced angiosperm genomes highlight the role of polyploidy in angiosperm evolution, and suggest that even the high level of importance we had already attributed to this mechanism was inadequate.     

Atmospheric CO2 enrichment and nutrient additions to planted soil increase mineralisation of soil organic matter, but do not alter microbial utilisation of plant- and soil C-sources

Plants link atmospheric and soil carbon pools through CO₂ fixation, carbon translocation, respiration and rhizodeposition. Within soil, microbial communities both mediate carbon-sequestration and return to the atmosphere through respiration. The balance of microbial use of plant-derived and soil organic matter (SOM) carbon sources and the influence of plant-derived inputs on microbial activity are key determinants of soil carbon-balance, but are difficult to quantify. In this study we applied continuous ¹³C-labelling to soil-grown Lolium perenne, imposing atmospheric CO₂ concentrations and nutrient additions as experimental treatments. The relative use of plant- and SOM-carbon by microbial communities was quantified by compound-specific ¹³C-analysis of phospholipid fatty acids (PLFAs). An isotopic mass-balance approach was applied to partition the substrate sources to soil respiration (i.e. plant- and SOM-derived), allowing direct quantification of SOM-mineralisation. Increased CO₂ concentration and nutrient amendment each increased plant growth and rhizodeposition, but did not greatly alter microbial substrate use in soil. However, the increased root growth and rhizosphere volume with elevated CO₂ and nutrient amendment resulted in increased rates of SOM-mineralisation per experimental unit. As rhizosphere microbial communities utilise both plant- and SOM C-sources, the results demonstrate that plant-induced priming of SOM-mineralisation can be driven by factors increasing plant growth. That the balance of microbial C-use was not affected on a specific basis may suggest that the treatments did not affect soil C-balance in this study.     

Assessing the impact of interfering organic matter on soil metaproteomic workflow

Soil organic matter (SOM) is biologically, chemically, and physically complex. As a major store of nutrients within the soil, it plays an important role in nutrient provision to plants. An enhanced understanding of SOM utilisation processes could underpin better fertiliser management for plant growth, with reduced environmental losses. Metaproteomics can allow the characterisation of protein profiles and could help gain insights into SOM microbial decomposition mechanisms. Here, we applied three different extraction methods to two soil types to recover SOM with different characteristics. Specifically, water-extractable organic matter, mineral-associated organic matter and protein-bound organic matter were targeted with the aim to investigate the metaproteome enriched in those extractions. As a proof-of-concept, replicated extracts from one soil were further analysed for peptide identification using liquid chromatography followed by tandem mass spectrometry. We employed a framework for mining mass spectra for both peptide assignment and fragmentation pattern characterisation. Different extracts were found to exhibit contrasting total protein and humic substance content for the two soils investigated. Overall, water extracts displayed the lowest humic substance content (in both soils) and the highest number of peptide identifications (in the soil investigated) with the most frequent peptide hits associated with diverse substrate/ligand binding proteins of Proteobacteria and derived taxa. Our framework also highlighted a strong peptidic signal in unassigned and unmatched spectra, information that is currently not captured by the pipelines employed in this study. Taken together, this work points to specific areas for optimisation in chromatography and mass spectrometry to adequately characterise SOM-associated metaproteomes.     

Do artificial and natural defoliation have similar effects on physiology of Eucalyptus globulus Labill. seedlings?

? Artificial defoliation is often used to simulate defoliation by herbivory and is usually considered a good indication of a plant’s response to a given type of damage. However, the findings of studies directly comparing the two defoliation types are inconsistent.

? Here, the short term effects of artificial and insect defoliation by larvae of Paropsisterna agricola on growth, biomass allocation and photosynthetic capacity of Eucalyptus globulus seedlings were compared in a glasshouse experiment. The artificial defoliation was carried out to closely resemble the spatial patterns observed for insect defoliation.

? Height and diameter increments were reduced as a result of insect defoliation, whereas artificial defoliation had no significant effect on height. Increased photosynthetic capacity was observed in response to both treatments, but the magnitude of this increase was larger in insect-than in artificially-defoliated seedlings. Significant reductions in foliar carbohydrate content and total biomass were noticeable in artificially-defoliated seedlings. Although the foliar carbohydrate levels also decreased across the crown zones following insect defoliation treatment, seedlings allocated a large amount of their biomass in the branches of the damaged zone.

? Despite our best endeavours to simulate insect defoliation in the artificial treatment, the latter may not reflect accurately the full strength of the effects. However, artificial and insect defoliation were similar in their direction of the responses they caused in E. globulus seedlings.

     

Establishment of the baseline sensitivity and monitoring response of Papaver rhoeas populations to florasulam

In accordance with the EPPO guideline for the efficacy evaluation of plant protection products, resistance risk analysis PP 1/213(1), a method was established to determine the baseline sensitivity of key weed species to florasulam, a new triazolopyrimidine sulfonanilide herbicide for post-emergence control of dicotyledonous weeds in cereals. The aim of the baseline monitoring project was to understand the natural variation in response to florasulam of diverse populations of Papaver rhoeas at the time of product launch. The method entailed seed collection from representative agricultural areas throughout Europe. The seed was subjected to glasshouse tests where dose-response studies were conducted and ED80 values generated. This enabled a sensitivity index to be calculated for each country, giving an indication of the variation in P rhoeas response to florasulam in the populations tested.     

The effects of corn silage dry matter content and sodium bicarbonate addition on nutrient digestion and growth by lambs and calves

One lamb and three calf trials were conducted to determine if interactions existed between the effects of dry matter (DM) content of corn silage at harvest and sodium bicarbonate supplementation on diet digestibility, nitrogen balance, rate and site of digestion and feedlot performance. Corn plants were harvested from the same field when DM content was approximately 31% (early; E) or 44% (late; L). Sodium bicarbonate (1.2% of DM intake) was added in a completely mixed ration. When lambs were offered diets ad libitum, (trial 1), intakes were greater (P less than .05) for L-silage diets, but apparent digestibilities were similar. Nitrogen balance was greater for sodium bicarbonate-supplemented diets, and was a reflection of greater (P less than .10) DM intakes for these diets. At similar diet DM intakes, N balance was greater for L-silage diets, with no effects measured due to sodium bicarbonate addition. When growing, abomasally cannulated heifers (trial 2) were offered diets 12 times per day, a significant interaction among treatments was measured for total tract and acid detergent fiber (ADF) digestion. Adding bicarbonate to the E-silage diet increased (P less than .05) digestion by 9.1 percentage units (66.4 vs 75.5%) but decreased digestibility of the L-silage diet by 4.2 percentage units (73 vs 68.8%). Grams of ADF apparently digested in the rumen followed the same pattern as for total tract digestion. In trial 3, ruminal rates of liquid and particulate passage and in situ rats of NDF digestion were determined using four rumen-cannulated heifers calves.(ABSTRACT TRUNCATED AT 250 WORDS)     

A review of tree fodder production and utilization within smallholder agroforestry systems in Kenya

Although the biological advantages in terms of animal production and improved soil fertility of the use of herbaceous legumes have been well demonstrated in Kenya and elsewhere, adoption by small-scale farmers has often been disappointing. This has led to increased research into the use of both indigenous and exotic fodder trees. In common with conventional pasture legumes, tree fodders contain high levels of crude protein and minerals and many show high levels of digestibility. They are readily accepted by livestock and presumably because of their deep-root systems, they continue to produce well into the dry season. Antinutritive factors can be a problem, however, and polyphenolics, toxic amino acids, cyanogenic glycosides and alkaloids are found in many tree species. There are abundant niches on small farms where fodder trees can be grown without affecting crop production. Although detailed management recommendations are lacking, guidelines exist with regard to appropriate cutting heights and harvesting frequencies. In the Embu region, it has been estimated that three kg of fresh fodder of Calliandra calothyrsus has the same effect on milk production as one kg of commercial dairy meal. Up to about 500 trees (250 m of hedgerow) will produce enough fodder to supplement one dairy cow for a complete lactation. The tree fodder can either replace the concentrate without loss of yield, or it can complement it to produce more milk. It is being enthusiastically adopted by small-scale farmers, many of whom are starting to produce their own seed. Other tree species are now being studied in order to avoid over-reliance on a single fodder species. This revised version was published online in August 2006 with corrections to the Cover Date.     

Stocking density and artificial habitat influence stock structure and yield from intensive nursery systems for mud crabs Scylla serrata (Forsskål 1775)

Intensive nursery systems are designed to culture mud crab postlarvae through a critical phase in preparation for stocking into growout systems. This study investigated the influence of stocking density and provision of artificial habitat on the yield of a cage culture system. For each of three batches of postlarvae, survival, growth and claw loss were assessed after each of three nursery phases ending at crab instars C1/C2, C4/C5 and C7/C8. Survival through the first phase was highly variable among batches with a maximum survival of 80% from megalops to a mean crab instar of 1.5. Stocking density between 625 and 2300 m⁻² did not influence survival or growth in this first phase. Stocking densities tested in phases 2 and 3 were 62.5, 125 and 250 m⁻². At the end of phases 2 and 3, there were five instar stages present, representing a more than 20‐fold size disparity within the populations. Survival became increasingly density‐sensitive following the first phase, with higher densities resulting in significantly lower survival (phase 2: 63% vs. 79%; phase 3: 57% vs. 64%). The addition of artificial habitat in the form of pleated netting significantly improved survival at all densities. The mean instar attained by the end of phase 2 was significantly larger at a lower stocking density and without artificial habitat. No significant effect of density or habitat on harvest size was detected in phase 3. The highest incidence of claw loss was 36% but was reduced by lowering stocking densities and addition of habitat. For intensive commercial production, yield can be significantly increased by addition of a simple net structure but rapidly decreases the longer crablets remain in the nursery.     

Ancient Polyploidy and Modem Crop Plants

The growing set of fully-sequenced angiosperm genomes highlight the role of polyploidy in angiosperm evolution, and suggest that even the high level of importance we had already attributed to this mechanism was inadequate. Gene loss following whole-genome duplication events has contributed much to the incongruities that we observe in comparative genetic maps, and presumably has also contributed to functional divergence of taxa. Ancient genome duplication has several consequences for levels and patterns of variation in modern plant populations, in particular contributing to the relatively conservative evolution of duplicated genes even at distant locations from one another in the genome. Comparison of gene retention/loss following independent whole-genome duplication events suggests patterns that may be relevant to the survival and productivity of newly-formed polyploids, with numerous implications for crop improvement.