Prevalence of rotavirus A infection and the detection of type G3P[11] strain in ruminants in Yobe state,Nigeria

Rotaviruses have a worldwide distribution and the infection is associated with diarrhea in young of ruminants as well as children. However, limited data exist on its prevalence and types in Yobe state, Nigeria. Detection of rotavirus A and types in ruminant population in Yobe state was the aim of the study. A total of 470 diarrheic fecal samples were collected and tested for rotavirus and types using serology and molecular techniques respectively. A prevalence rate of 2.98% (14/470) was found in the three species with specific rates of 2.9% (6/202), 3.8% (6/158), and 1.8% (2/110) in goat, sheep, and cattle respectively. The prevalence rates of 3.6% (12/331), 1.2% (1/84), and 1.8% (1/55) were for those aged < 1–3, 4–6, and 7–9 months old, respectively, while 4.9% (9/185) and 1.7% (5/285) were in males and females respectively. Rotavirus genes VP7 and VP4 were detected in 2 (14.3%) out of the 14 ELISA-positive samples while deduced amino acid sequences of the major variable regions revealed the genes to belong to types G3P[11] strain. Significant association was found between the infection and sex (P < 0.05) unlike in the species and age groups of the ruminants. The circulation of rotavirus virus in ruminants and type G3P[11] in cattle has been confirmed in the study. Hence, there is a need for continuous surveillance, awareness campaign, and assessment of the economic losses and public health implications of rotavirus infection in Nigeria.

     

Effect of water quality indices on phytoplankton of a sluggish tidal creek in Lagos, Nigeria

The phytoplankton of a tidal creek in Lagos was investigated for six months (September 1998-February 1999). The physico-chemical environment was essentially neutral (pH 7.00-7.30), relatively more transparent (> 0.23 m), expressed higher conductivity (> 0.10 mS cm(-1)), higher chloride values (> 23.48 mg L(-1)), lower nitrate content (< 0.70 mg L(-1)), lower sulphate values (< 0.45 mg L(-1)) and phosphate values (< 0.12 mg L(-1)) in the dry months. In the wet months, September to November 1998, conductivity (< 0.16 mS cm(-1)), transparency (< 0.80 m), salinity (< 0.04%), dissolved oxygen (< 24.00 mg L(-1)), chloride (< 24.21 mg L(-1)) and phosphate (< 0.21 mg L(-1)) were recorded. The phytoplankton was dominated by diatoms (48 pennate forms and 23 centric forms). The other algal groups comprised six blue- green algae and six green algae. Species richness (d) was high in stations nearer the Lagos lagoon for the six sampling periods. Shannon-Weaver index (H1) was lowest in November 1998 and highest in October 1998 and February 1999 while evenness of species J was low (< 0.71) throughout the period. Higher phytoplankton biomass was recorded in the dry months than wet months.     

Harnessing genetic resources and progress in plant genomics for fonio (<Emphasis Type="Italic">Digitaria</Emphasis> spp.) improvement

Fonio plays an important role in food security and in income generation, in drought prone areas of West Africa. This review aimed at highlighting fonio production constraints, breeding objectives and available genetic resources for fonio improvement. Lack of institutional support to research, lack of improved seeds, parasitic weed infestation, grain shattering, lodging and toilsome of the post-harvest handling are the major constraints limiting fonio production. These factors lead to negligence of the crop notwithstanding its high nutritional and market values. Breeding programs on fonio should first focus on solving these problems to improve overall yield. We explored the potential of mutation breeding, somaclonal variation, somatic hybridization, molecular markers, comparative genomics, individualized targeting induced local lesions in genomes (iTILLING), genotype by sequencing and genomic selection to develop improved fonio varieties. Determination of ploidy level, wide collection and characterization of fonio genetic resources, definition of core reference set collection, and exploitation of heterosis are some key research areas that would be of great interest in fonio improvement. However, this can only be achieved with adequate funding and institutional support.     

Seedball‐induced changes of root growth and physico‐chemical properties—a case study with pearl millet

Seedball is a cheap “seed‐pelleting‐technique” that combines local materials, seeds and optionally additives such as mineral fertilizer to enhance pearl millet (Pennisetum glaucum (L.) R. Brown) early growth under poor soil conditions. The major objective here was to study the mechanisms behind positive seedball effects. Chemical effects in the rhizosphere and early root development of seedball‐derived pearl millet seedlings were monitored using micro‐suction‐cups to extract soil solutions and X‐ray tomography to visualize early root growth. Pearl millet (single seedling) was grown in soil columns in a sandy soil substrate. Root and shoot biomass were sampled. X‐ray tomography imaging revealed intense development of fine roots within the nutrient‐amended seedball. Seedball and seedball+NPK treatments, respectively, were 65% and 165% higher in shoot fresh weight, and 108% and 227% higher in shoot dry matter than the control treatment. Seedball+NPK seedlings showed promoted root growth in the upper compartment and 105% and 30% increments in root fresh and dry weights. Soil solution concentrations indicate that fine root growth ass stimulated by release of nutrients from the seedballs to their direct proximity. Under real field conditions, the higher root length density and finer roots could improve seedlings survival under early drought conditions due to better ability to extract water and nutrients from a greater soil volume.