Survival of Atlantic salmon captured in and released from a commercial trap-net: Potential for selective harvesting of stocked salmon

The major wild Atlantic salmon stocks in the Baltic Sea began to recover in the late 1990s. This recovery has been partly due to strict regulations in the Gulf of Bothnia that effectively prevent salmon fisheries during the peak migration. About half of the migrating salmon, however, are reared fish that could be harvested. We simulated a limited trap-net fishery that selectively harvested reared salmon and released wild fish, and studied the survival and migration of the released salmon. We tagged and released 1970 salmon caught in the trap-nets along the coast in 2001 and 2002. The mean maximum capture and release induced mortality of salmon was 11%, ranging between 4% and 21% in different release groups by year, sea age and number of releases. The cumulative mortality for the total salmon population on their spawning migration in the Gulf of Bothnia was below 5%, and it would not increase considerably after the first capture and release events, provided fishing effort is not excessive and fish are handled properly. Survival of trap-net captured and released Baltic salmon appears high and their migration behavior is not altered due to this handling. Several preconditions, however, should be considered before selective fishing is introduced in the Gulf of Bothnia salmon fishery.     

The first detection of influenza in the Finnish pig population: a retrospective study

Background

Swine influenza is an infectious acute respiratory disease of pigs caused by influenza A virus. We investigated the time of entry of swine influenza into the Finnish pig population. We also describe the molecular detection of two types of influenza A (H1N1) viruses in porcine samples submitted in 2009 and 2010.This retrospective study was based on three categories of samples: blood samples collected for disease monitoring from pigs at major slaughterhouses from 2007 to 2009; blood samples from pigs in farms with a special health status taken in 2008 and 2009; and diagnostic blood samples from pigs in farms with clinical signs of respiratory disease in 2008 and 2009. The blood samples were tested for influenza A antibodies with an antibody ELISA. Positive samples were further analyzed for H1N1, H3N2, and H1N2 antibodies with a hemagglutination inhibition test. Diagnostic samples for virus detection were subjected to influenza A M-gene-specific real-time RT-PCR and to pandemic influenza A H1N1-specific real-time RT-PCR. Positive samples were further analyzed with RT-PCRs designed for this purpose, and the PCR products were sequenced and sequences analyzed phylogenetically.

Results

In the blood samples from pigs in special health class farms producing replacement animals and in diagnostic blood samples, the first serologically positive samples originated from the period July–August 2008. In samples collected for disease monitoring, < 0.1%, 0% and 16% were positive for antibodies against influenza A H1N1 in the HI test in 2007, 2008, and 2009, respectively. Swine influenza A virus of avian-like H1N1 was first detected in diagnostic samples in February 2009. In 2009 and 2010, the avian-like H1N1 virus was detected on 12 and two farms, respectively. The pandemic H1N1 virus (A(H1N1)pdm09) was detected on one pig farm in 2009 and on two farms in 2010.

Conclusions

Based on our study, swine influenza of avian-like H1N1 virus was introduced into the Finnish pig population in 2008 and A(H1N1)pdm09 virus in 2009. The source of avian-like H1N1 infection could not be determined. Cases of pandemic H1N1 in pigs coincided with the period when the A(H1N1)pdm09 virus was spread in humans in Finland.     

The use of ecological traits in extinction risk assessments: A case study on geometrid moths

Identifying ecological traits that make some species more vulnerable than others is vital for predictive conservation science. By identifying these predisposing traits we can predict which species are most prone to decline and gain an understanding of the reasons behind the decline. The aim of this study was to determine the ecological traits that best predict extinction risk and distribution change in Finnish geometrid moths and to develop an understanding of the biological connections between these traits and threats. We found that larval specificity, overwintering stage and flight period length predicted distribution change and extinction risk. There was also an interaction effect between larval specificity and body size on both distribution change and extinction risk. In monophagous species the host plant distribution predicted extinction risk. Even though ecological traits are known to be important determinants of extinction risk, the IUCN red list categorization system is exclusively based on quantitative measures of populations and ignores the ecological traits. Here, we propose that taxon specific ecological data should also be used to predict extinction risk at least on a regional scale to improve the accuracy of the IUCN extinction risk classification.     

Direct experimental evidence for the contribution of lime to CO2 release from managed peat soil

Liming is a common management practice used to achieve optimum pH for plant growth in agricultural soils. Addition of lime to the soil, however, may cause CO₂ release when the carbonates in lime dissolve in water. Although lime may thereby constitute a significant carbon source, especially under acidic soil conditions, experimental data on the CO₂ release are lacking so far. We conducted a split-plot experiment within a cut-away peatland cultivated with a bioenergy crop (reed canary grass, Phalaris arundinacea L.) with lime and fertilizer treatments to determine effects of lime on the CO₂ emissions from soil and to better understand mechanisms underlying liming effects. Carbon dioxide release was measured over two growing seasons in the field after liming, and complementary laboratory studies were conducted. To differentiate CO₂ derived from lime and biotic respiration the δ¹³C of CO₂ released was determined and the two-pool mixing model was applied. The results showed that lime may contribute significantly to CO₂ release from the soil. In the laboratory, more than 50% of CO₂ release was attributable to lime-carbonates during short-term incubation. Lime-derived CO₂ emissions were much lower in the field, and were only detected during the first (2–4) months after the application. However, a maximum of 12% of monthly CO₂ emissions from the cultivated peatland originated from the lime. Biotic respiration rates were similar in limed and unlimed soils, suggesting that higher pH did not, at least in the short-term, increase carbon losses from cultivated peat soils. Additional fertilization and acidification did not contribute to further CO₂ release from the lime. According to our first estimations about one sixth of the lime applied would be released as CO₂ from the managed peatland, with all lime-derived emissions occurring during the first year of application (equivalent to about 4.6% of the total annual CO₂ losses from the soil in the first year). This suggests that the mass-balance approach as proposed by the IPCC Tier 1 methodology, which assumes that all carbon in lime ends up as CO₂ in the atmosphere, overestimates the emissions from lime. Our study further shows that there is a great risk to overestimate heterotrophic microbial activity in limed soils by measuring the CO₂ release without separating abiotic and biotic CO₂ production.     

Extraintestinal pathogenic Escherichia coli in poultry meat products on the Finnish retail market

Background

Extraintestinal pathogenic Escherichia coli bacteria (ExPEC) exist as commensals in the human intestines and can infect extraintestinal sites and cause septicemia. The transfer of ExPEC from poultry to humans and the role of poultry meat as a source of ExPEC in human disease have been discussed previously. The aim of the present study was to provide insight into the properties of ExPEC in poultry meat products on the Finnish retail market with special attention to their prevalence, virulence and phylogenetic profiles. Furthermore, the isolates were screened for possible ESBL producers and their resistance to nalidixic acid and ciprofloxacin was tested.

Methods

The presence of ExPEC in 219 marinated and non-marinated raw poultry meat products from retail shops has been analyzed. One E. coli strain per product was analyzed further for phylogenetic groups and possession of ten virulence genes associated with ExPEC bacteria (kpsMT K1, ibeA, astA, iss, irp2, papC, iucD, tsh, vat and cva/cv) using PCR methods. The E. coli strains were also screened phenotypically for the production of extended-spectrum β-lactamase (ESBL) and the susceptibility of 48 potential ExPEC isolates for nalidixic acid and ciprofloxacin was tested.

Results

E. coli was isolated from 207 (94.5%) of 219 poultry meat products. The most common phylogenetic groups were D (50.7%), A (37.7%), and B2 (7.7%). Based on virulence factor gene PCR, 23.2% of the strains were classified as ExPEC. Two ExPEC strains (1%) belonged to [O1] B2 svg+ (specific for virulent subgroup) group, which has been implicated in multiple forms of ExPEC disease. None of the ExPEC strains was resistant to ciprofloxacin or cephalosporins. One isolate (2.1%) showed resistance to nalidixic acid.

Conclusions

Potential ExPEC bacteria were found in 22% of marinated and non-marinated poultry meat products on the Finnish retail market and 0.9% were contaminated with E. coli [O1] B2 svg+ group. Marinades did not have an effect on the survival of ExPEC as strains from marinated and non-marinated meat products were equally often classified as ExPEC. Poultry meat products on the Finnish retail market may have zoonotic potential.     

Effects of using certain tree species in forest regeneration on volume growth,timber yield,and carbon stock of boreal forests in Finland under different CMIP5 projections

We studied how the use of certain tree species in forest regeneration affected the volume growth, timber yield, and carbon stock of boreal forests in Finland under the current climate (1981–2010) and recent-generation global climate model (GCM) predictions (i.e., multi-model means and individual GCMs of CMIP5), using the representative concentration pathways RCP4.5 and RCP8.5 over the period 2010–2099. Forest ecosystem model simulations were conducted on upland national forest inventory plots throughout Finland. In a baseline management regime, forest regeneration was performed by planting the same tree species that was dominant before the final cut. In alternative management regimes, either Scots pine, Norway spruce, or silver birch were planted on medium-fertility sites. Other management actions over rotation were done as in a baseline management. Compared to baseline management, an increased planting of birch resulted in relative sense highest increase in the volume growth, timber yield, and carbon stock in forests in the south, especially under severe climate projections (e.g., multi-model mean RCP8.5, and GCMs such as HadGEM2-ES RCP8.5 and GFDL-CM3 RCP8.5). This situation was opposite for Norway spruce. In the north, the volume growth, timber yield, and carbon stock of forests increased the most under severe climate projections (e.g., multi-model mean RCP8.5 and CNRM-CM5 RCP8.5), regardless of tree species preference. The magnitude of the climate change impacts depended largely on the geographical region and the severity of the climate projection. Increasing the cultivation of birch and Scots pine, as opposed to Norway spruce, could be recommended for the south. In the north, all three species could be cultivated, regardless of the severity of climate change.     

Elevated temperature effects on germination and early growth of European aspen (Populus tremula), hybrid aspen (P. tremula × P. tremuloides) and their F2-hybrids

This study aimed to understand the interaction between temperature and genotype in terms of the effect on early seedling development of European aspen (Populus tremula) and various F₂-aspen hybrids. We evaluated the response of 16 different European aspen and F₂-hybrid families on seed germination, survival rate and seedling height in one- and two-family trials under three different temperature regimes. In one-family trials, higher germination and higher survival rates were observed in higher temperature (C1700), leading to taller seedlings. European aspen × hybrid aspen individuals (Asp × Hyb) had a higher survival rate and taller seedlings than Asp, Hyb × Asp or Hyb × Hyb individuals. The difference between Asp × Hyb and Hyb × Asp was pronounced. Both growth conditions and genotype (i.e., hybrid cross) had strong effects on germination, survival rate and height of European aspen and F₂-hybrid seedlings. However, the interaction of genotype and growth conditions also had a significant influence on survival rate and seedling height, but not on germination. Two-family trials involving European aspen and F₂-hybrids led to significant negative effects on germination and survival rate and also facilitation effects on seedling height. Similarly, genotype had strong effects on germination and survival rate. Different genotypes and traits affected survival rate and seedling height differently in different growth conditions. These differences were more pronounced in the warmest environment, i.e., 1,700 degree days. We conclude that introgression between F₂-hybrids and local European aspen is likely in the current climate, and any warming will likely favor certain F₂-hybrids, especially the most probable types (P. tremula × (P. tremula × P. tremuloides)).     

Influence of incorporated wild Solanum genomes on potato properties in terms of starch nanostructure and glycoalkaloid content

Interspecific somatic hybrids produced by protoplast fusion between two wild Solanum species (S. acaule, acl; S. brevidens, brd) and cultivated potato Solanum tuberosum (tbr) were analyzed in terms of the starch nanometer-range structure and glycoalkaloid (GA) contents. The crystallinity of starch granules, the average size of starch crystallites, and the lamellar distances were obtained from tuber samples using wide-angle and small-angle X-ray scattering methods. These measurements showed that incorporation of wild genomes from either nontuberous (brd) or tuberous (acl) Solanum species caused no significant modifications of the nanostructure of potato starch. In contrast, the GA profiles of the hybrids, which were analyzed by LC-ESI-MS in both tuber and foliage samples, differed considerably from those of cultivated potato. Regardless of the low total tuber GA concentrations (approximately 9 mg/100 g of fresh weight), the somatic hybrids contained GAs not detected in the parental species. A high proportion of spirotype GAs consisting of 5,6-dihydrogenated aglycons, for example, alpha-tomatine and tomatidine bound with solatriose, and chacotriose were found in the hybrids. In conclusion, the foliage of interspecific hybrids contained a higher variation in the structures of GAs than did the tubers.     

The first report of autochthonous non-vector-borne transmission of canine leishmaniosis in the Nordic countries

Background

Leishmania spp. are zoonotic protozoans that infect humans and other mammals such as dogs. The most significant causative species in dogs is L. infantum. In dogs, leishmaniosis is a potentially progressive, chronic disease with varying clinical outcomes. Autochthonous cases of canine leishmaniosis have not previously been reported in the Nordic countries.

Results

In this report we describe the first diagnosed autochthonous cases of canine leishmaniosis in Finland, in which transmission via a suitable arthropod vector was absent. Two Finnish boxers that had never been in endemic areas of Leishmania spp., had never received blood transfusions, nor were infested by ectoparasites were diagnosed with leishmaniosis. Another dog was found with elevated Leishmania antibodies. A fourth boxer dog that had been in Spain was considered to be the source of these infections. Transmission occurred through biting wounds and semen, however, transplacental infection in one of the dogs could not be ruled out.Two of the infected dogs developed a serious disease and were euthanized and sent for necropsy. The first one suffered from membranoproliferative glomerulonephritis and the second one had a chronic systemic disease. Leishmania sp. was detected from tissues by PCR and/or IHC in both dogs. The third infected dog was serologically positive for Leishmania sp. but remained free of clinical signs.

Conclusions

This case report shows that imported Leishmania-infected dogs may pose a risk for domestic dogs, even without suitable local arthropod vectors.