Environmental and spatial characterisation of bacterial community composition in soil to inform sampling strategies

Soil physicochemical properties and microbial communities are highly heterogeneous and vary widely over spatial scales, necessitating careful consideration of sampling strategies to provide representative and reproducible soil samples across field sites. To achieve this, the study aimed to establish appropriate sampling methodology and to determine links between the variability of parameters, utilising two sampling strategies. The first (design 1) involved extracting 25 cores from random locations throughout the field and pooling them into five sets of five cores. The second (design 2) involved a further 25 cores within five 1 m² sub-plots. Sub-samples from each sub-plot were pooled in order to determine between and within sub-plot variability. All samples were analysed independently and as pooled sub-samples. Results indicate that pooling spatially separated samples significantly reduced the variability in pH, compared to individual samples. Pooling samples from a small area resulted in lower within sub-plot variability than between sub-plots for pH and bacterial community composition assessed by terminal-restriction fragment length polymorphism analysis. Following multivariate statistical analysis, a large amount of variation in community composition was explained by soil pH, which is remarkable given the relatively small size of the sampling area and minor differences in pH. Moisture content was also important in determining bacterial communities in the random design (design 1). In the 1 m² sub-plot design (design 2), the spatial location of the plots explained a large degree of the variation in bacterial community composition between plots, which was due to spatial autocorrelation of pH and possible additional environmental parameters. This study emphasises the importance of sampling design for obtaining representative samples from soil.     

Weeds,aphids, and specialist parasitoids and predators benefit differently from organic and conventional cropping of winter cereals

The aphid–natural enemy interaction in winter wheat fields constitutes a complex system that has been frequently studied because of its implication for biological control. However, not all of the aphids living in cereal fields are crop pests, as there are also aphids living on weeds that may serve as alternative hosts or prey for aphid parasitoids or predators. In this context, a concomitant survey of the plant and insect communities was conducted to understand how different plant communities affect the abundance and richness of aphids and the interactions with their natural enemies. The plant community was split into functional groups (grasses, legumes and forbs), and the aphid community was divided into feeding groups according to their host preferences (specialists in grasses or forbs). The grass aphids, which dominated the total aphid catches, responded positively to grass cover, which was particularly enhanced in the conventional fields. Conversely, the forb aphids, which mainly conditioned the total species richness of the aphids, were closely correlated with the local abundance of legumes. The system of cereal aphid-parasitoids was enhanced in the conventional fields, where the abundance of grasses was higher, whereas the legumes of the organic fields indirectly played a key role in enhancing the richness of the parasitoids and the abundance of predators. Our findings indicate that a bottom-up effect exists throughout the plant community, aphids, and aphidophagous insects and that plant community characteristics should be considered to better understand cereal aphid control.     

Using midday stem water potential for scheduling deficit irrigation in mid–late maturing peach trees under Mediterranean conditions

Irrigation techniques that reduce water applications are increasingly applied in areas with scarce water resources. In this study, the effect of two regulated deficit irrigation (RDI) strategies on peach [Prunus persica (L.) Batsch cv. “Catherine”] performance was studied over three growing seasons. The experimental site was located in Murcia (SE Spain), a Mediterranean region. Two RDI strategies (restricting water applications at stage II of fruit development and postharvest) based on stem water potential (Ψ_s) thresholds (?1.5 and ?1.8 MPa during fruit growth and ?1.5 and ?2.0 MPa during postharvest) were compared to a fully irrigated control. Soil water content (θ_v), Ψ_s, gas exchange parameters, vegetative growth, crop load, yield and fruit quality were determined. RDI treatments showed significantly lower values of θ_v and Ψ_s than control trees when irrigation water was restricted, causing reductions in stomatal conductance and photosynthesis rates. Vegetative growth was reduced by RDI, as lower shoot lengths and pruning weights were observed under those treatments when compared to control. However, fruit size and yield were unaffected, and fruit quality was slightly improved by RDI. Water savings from 43 to 65 % were achieved depending on the year and the RDI strategy, and no negative carryover effect was detected during the study period. In conclusion, RDI strategies using Ψ_s thresholds for scheduling irrigation in mid–late maturing peach trees under Mediterranean conditions are viable options to save water without compromising yield and even improving fruit quality.     

Economic trade-offs to limit nonpoint sources of agricultural pollution

A national model has been built which allows analysis of physical and economic trade-offs as soil loss per acre is limited to specified levels in each major land group of the nation. Crop variables with their associated conservation practices are developed for each of 1891 land groups in 223 agricultural producing regions and 51 water supply regions. The regions and soil groups are made interdependent through regional commodity demands and a transportation submodel. Hence, changes in cropping systems and erosion control practices in one region are simultaneously expressed in effects on other regions. Soil loss limits are set at 10, 5, and 3 t per acre. The 10 t limit does not have a large impact on interregional production patterns and farm comodity prices. However, the 5 and 3 t limits, either singularly or in combination with different export levels, cause rather marked increases in commodity prices. Also at limits of 5 and 3 t, considerable shifts take place among regions in the crops grown and the erosion control methods used. Regions with erosive soils sacrificed in reduced income; regions with level soils can crop more intensely and gain greater income. Conservation practices such as reduced tillage increase the amount of pesticides needed in some regions and pose special environmental problems. The South Atlantic region is affected most by soil loss limits to control nonpoint pollution. The Great Plains regions with more level land and limited rainfall are affected least.     

Salmonella Brandenburg--emergence of a variant strain on a sheep farm in the South Island of New Zealand

Salmonella Brandenburg was initially diagnosed in New Zealand in an aborted ewe from a Merino flock in mid-Canterbury in1996. The following year, the disease occurred on farms in mid-Canterbury and on one farm near Winton in Southland (Bailey1997). Since then, this bacterium has caused widespread abortion and deaths in pregnant ewes in Southland, coastal Otago and south- and mid-Canterbury. In cattle, the same organism has caused diarrhoea and dysentery in calves and adult cattle, and abortions and deaths in first-calving cows and, to a lesser extent, in second-calving and older cows. Salmonella Brandenburg has also caused diarrhoea and fetal deaths in dogs, and diarrhoea and deaths in foals. The outbreak strain has been extensively studied using pulsed-field gel electrophoresis (PFGE). All isolates tested to date have had an indistinguishable molecular pattern with the exception of a single isolate from a sheep-yard dust sample recovered in October 2000 that is the subject of this report. The molecular pattern of the variant strain differed from that of the epidemic strain by the absence of one high molecular weight band and the addition of three lower molecular weight bands.     

Liveweight gain and copper status of young deer treated or untreated with copper oxide wire particles on ten deer farms in Canterbury

AIMS: To measure the liveweight response of young deer to copper supplementation on a range of deer farms in the Canterbury region of the South Island, New Zealand, and relate any response to plasma copper concentration. METHODS: On each of 10 farms throughout north and mid-Canterbury, young deer (4-7 months old) were allocated by liveweight to two groups of 45-50. The deer in one group each received 5 g copper oxide wire particles (COWP) at the start of the project (March-June 2000) and a further 10 g COWP 3 months later (+Cu group), while the other group received no copper supplementation (-Cu group). Liveweight (+/-1 kg) of all deer was recorded monthly. A 10 ml blood sample was taken from a sub-sample of 10 animals in each group at the beginning of the trial and from the same animals 3 and 6 months later for measurement of plasma copper concentration. RESULTS: There was no significant effect (p=0.96) of treatment with COWP on liveweight gain (overall mean liveweight gain = 169 g/day). This result was consistent for all farms and for both periods. Mean plasma copper concentration declined from 12.5 (SD 3.4) to 10.3 (SD 3.0) micromol/l in +Cu groups, and to a significantly lower level (p<0.001) of 8.6 (SD 3.2) in -Cu groups after 3 months, at which time 38% of -Cu animals were considered hypocupraemic (<8 micromol/l). At the end of the second 3-month period there was no significant treatment effect on plasma copper concentration, which averaged 9.4 (SD 2.3) micromol/l. Of the feed samples submitted (n=46), only 17% had a copper concentration <5.0 mg/kg dry matter (DM), 13% had a molybdenum concentration >1.0 mg/kg, and 21% had a sulphur content >3.5 g/kg. CONCLUSIONS: Under the conditions of these trials, no response in liveweight gain to copper supplementation was observed despite evidence of hypocupraemia in 38% of -Cu animals, which gained weight at similar rates to those that had adequate plasma copper levels. The extent of the hypocupraemia was either not sufficiently severe, or not maintained for a long enough period to cause copper deficiency resulting in reduced liveweight gain. No other signs of copper deficiency were evident. There is scope for deer farmers to reassess the need for copper supplementation in young deer.     

An epidemic of salmonellosis caused by Salmonella Typhimurium DT160 in wild birds and humans in New Zealand

AIM: This study reports an outbreak of salmonellosis due to S. Typhimurium DT160 which caused extensive mortality in wild birds and enteric disease in humans in New Zealand during the winter and spring months of the year 2000. METHODS: Necropsies were performed and microbiological examinations undertaken on wild birds from populations in which mass mortality was reported, and on captive indigenous birds which died suddenly during the winter and spring of 2000. Affected tissues were examined histologically and isolates of S. Typhimurium were phage typed and examined using pulsedfield gel electrophoresis (PFGE). Isolates of S. Typhimurium obtained from cases of human enteric disease which occurred during these months were phage typed, examined using PFGE and compared with the bird isolates. RESULTS: Central and northern areas of the South Island and the southern North Island were worst affected with die-offs of several hundreds of sparrows and other birds reported in rural areas. Mortalities reached a peak in winter (July-August) 2000 and decreased to small numbers during the spring and early summer. The birds usually died of an acute septicaemia with multifocal necrotising lesions in the liver and spleen. Human cases throughout the country increased gradually over the same period. Isolates from birds, livestock and humans examined using PFGE were indistinguishable from one another. CONCLUSION: This strain of Salmonellahas emerged as a major cause of septicaemia in wild birds in New Zealand. Because of the close association between house sparrows (Passer domesticus) and humans, the organism also poses a serious zoonotic risk. The possibility that the infection may spread to involve indigenous species needs investigation.     

Salinity tolerance during early development of threatened Murray hardyhead (Craterocephalus fluviatilis) to guide environmental watering

1. The worldwide reduction in wetlands has led to the large‐scale decline of wetland‐dependent species. In Australia, to redress some of the decline, partial restoration of the hydrology of a small number of wetlands has been attempted using allocations of environmental water.
2. A common goal of the watering is the maintenance and enhancement of native fish communities, which historically have included populations of the salt tolerant Murray hardyhead (Craterocephalus fluviatilis), a small, short‐lived fish, endemic to the lower Murray–Darling Basin.
3. Despite the addition of environmental water to several sites at which the species is known to persist, populations continue to decline. This decline is, at least in part, suspected to be a consequence of salinities that conflict with the breeding ecology and survival of early life stages.
4. Here the effect of salinity on egg hatch rate and the upper salinity tolerance of larval and juvenile Murray hardyhead was determined under laboratory conditions. It was found that eggs were vulnerable to elevated salinities, whereas juveniles were capable of tolerating salinities up to 105 ppt.
5. Based on the results of the experiment, brackish wetlands managed for Murray hardyhead should be maintained, where possible, between 12 and 45 ppt. Such a salinity regime will necessitate less intensive management of salinity, and a reduced volume of environmental water, providing both environmental and fiscal benefits. The research highlights the benefits of investment in targeted research.

     

New invasive predator reduces the abundance of native prey in a cold-temperate marine fouling community

1. Invasive species threaten the conservation of marine environments, and urgent management strategies are needed to prevent their introduction, establishment and spread. Specifically, marine invasive predators destabilize ecological interactions and alter community structure and function. However, most of the evidence showing the effect of these predators is restricted to a few species and regions, while for others the information remains scarce.
2. This study experimentally evaluated the ecological effects of the sea slug Pleurobranchaea maculata, a recently introduced invasive predator, on the fouling communities of a cold-temperate port in the South-western Atlantic.
3. The results show that increasing predation pressure reduces significantly the abundance of sea anemones, which are among the preferred prey items.
4. This study reveals new evidence to help better understand the effects of P. maculata on the biological communities of a recently invaded region. Furthermore, it provides the first experimental evidence supporting the hypothesis that marine invasive predators can induce a significant decrease in the abundance of native species in benthic communities of cold-temperate marine environments in the South-western Atlantic.

     

Clinical evaluation of methoximorpholino-doxorubicin (FCE 23762) in dogs with spontaneous malignancies

We conducted a clinical evaluation of FCE 23762, a methoxymorpholino analog of doxorubicin, in 48 dogs with metastatic, nonresectable, or chemotherapy-resistant spontaneous malignancies at an initial dosage of 50-60 microg/kg IV every 3 weeks. Clinical evidence of toxicity was minimal; 6 dogs developed grades I, II, and III hematologic toxicities after the 1st treatment, and 1 dog developed grade II gastrointestinal toxicity. One dog became pancytopenic 4 months after discontinuation of FCE 23762. No other adverse effects were noted. Partial or complete remissions were observed in 32% of the dogs. Responses were observed both in previously untreated dogs and in those that had received prior chemotherapy, including doxorubicin. FCE 23762 is a promising new antineoplastic agent that can be used safely in dogs with cancer; doses higher than those used in this study may be used eventually in practice.