QTL mapping of volatile compounds in ripe apples detected by proton transfer reaction-mass spectrometry

The availability of genetic linkage maps enables the detection and analysis of QTLs contributing to quality traits of the genotype. Proton Transfer Reaction Mass Spectrometry (PTR-MS), a relatively novel spectrometric technique, has been applied to measure the headspace composition of the Volatile Organic Compounds (VOCs) emitted by apple fruit genotypes of the progeny ‘Fiesta’ × ‘Discovery’. Fruit samples were characterised by their PTR-MS spectra normalised to total area. QTL analysis for all PTR-MS peaks was carried out and 10 genomic regions associated with the peaks at m/z = 28, 43, 57, 61, 103, 115 and 145 were identified (LOD > 2.5). We show that it is possible to find quantitative trait loci (QTLs) related to PTR-MS characterisation of the headspace composition of single whole apple fruits indicating the presence of a link between molecular characterisation and PTR-MS data. We provide tentative information on the metabolites related to the detected QTLs based on available chemical information. A relation between apple skin colour and peaks related to carbonyl compounds was established. The two authors contributed equally to this work.     

Allerod--younger dryas lake temperatures from midge fossils in atlantic Canada

Remains of freshwater midges are abundant in lake sediments, and their species distributions are closely related to the surface-water temperature of lakes; their distributions thus provide a powerful tool for paleoclimatology. The distribution of species in a core from Splan Pond in Atlantic Canada indicates that there were abrupt transitions in late-glacial temperatures between warm and cold states. The transitions are correlative with the well-known warm Aller?d and cold Younger Dryas events in Europe. These data thus confirm the inference from palynological data that these events affected regions on both sides of the Atlantic.     

Genetic Improvement and Diversity in Snake River Wheatgrass (Elymus wawawaiensis) (Poaceae: Triticeae)

With the increased emphasis on using native plant materials in range revegetation programs in the western United States it is critical to identify genetically similar groups and develop native grasses that are competitive with invasive weeds, easy to establish, and persistent, and that produce high seed yield. A grass that shows appreciable drought tolerance on arid rangelands is Snake River wheatgrass (Elymus wawawaiensis J. Carlson & Barkworth). This study was designed to estimate genetic relationships and underlying genetic components for seed and forage trait improvement between plant introductions (PIs) of Snake River wheatgrass, 28 half-sib Snake River wheatgrass families (HSFs), and cultivars Secar and Discovery at Nephi, Utah, between 2005 and 2006. Based on molecular genetic diversity data in Snake River wheatgrass, with the exception of the PIs originating from Enterprise, Oregon, all other collections and cultivars are not genetically different and represent a common gene pool from which to develop improved Snake River wheatgrass germplasm. Selection in Snake River wheatgrass for total seed yield (g · plot^-1), 100-seed weight (g), and seedling emergence from a deep planting depth had a positive effect. Further increases through selection and genetic introgression from hybridization with PIs will likely increase seed yield and 100-seed weight, but will not increase seedling emergence. Increases in dry matter yield (DMY) were observed after two cycles of selection in the HSFs compared to the PIs. There remains considerable genetic and phenotypic variation to further increase DMY in Snake River wheatgrass through selection and hybridization. Trends in forage nutritional quality were not observed after two cycles of selection in the HSFs or the PIs and will not likely result in improvement. Through recurrent selection, populations of Snake River wheatgrass have been and can be developed to more effectively establish and compete on annual weed–infested rangelands.     

Tropical reptiles in pine forests: Assemblage responses to plantations and plantation management by burning

Worldwide, the land area devoted to timber plantations is expanding rapidly, especially in the tropics, where reptile diversity is high. The impacts of plantation forestry and its management on native species are poorly known, but are important, because plantation management goals often include protecting biodiversity. We examined the impact of pine (Pinus caribaea) plantations, and their management by fire, on the abundance and richness of reptiles, a significant proportion of the native biodiversity in tropical northern Australia, by (i) comparing abundance and diversity of reptiles among pine plantations (on land cleared specifically for plantation establishment), and two adjacent native forest types, eucalypt and Melaleuca woodlands, and (ii) comparing reptile abundance and richness in pine forest burnt one year prior to the study to remove understorey vegetation with pine forest burnt two years prior to the study. We also examined the influence of fire on reptile assemblages in native vegetation, by comparing eucalypt woodland burnt two years prior to the study and unburnt for eight years. To quantify mechanisms driving differences in reptile richness and abundance among forest types and management regimes, we measured forest structure, the temperatures used by reptiles (operative temperature) and solar radiation, at replicate sites in all forest types and management regimes. Compared to native forests, pine forests had taller trees, lower shrub cover in the understorey, more and deeper exotic litter (other than pine), and were cooler and shadier. Reptile assemblages in pine forests were as rich as those in native forests, but pine assemblages were composed mainly of species that typically use closed-canopy rainforest and prefer cooler, shadier habitats. Burning did not appear to influence the assemblage structure of reptiles in native forest, but burning under pine was associated with increased skink abundance and species richness. Burned pine was not warmer or sunnier than unburned pine, a common driver of reptile abundance, so the shift in lizard use after burning may have been driven by structural differences in understorey vegetation, especially amounts of non-native litter, which were reduced by burning. Thus, burning for management under pine increased the abundance and richness of lizard assemblages using pine. Pine plantations do not support the snake diversity common to sclerophyllous native forests, but pine may have the potential to complement rainforest lizard diversity if appropriately managed.     

Temporal changes in chemical properties of air‐dried stored soils and their interpretation for long‐term experiments

The usefulness of stored soils from long‐term experiments is often questioned because of changes that might occur during storage. We examined changes during long‐term storage (8–69 years) in the chemical properties of soils with a range of pH values (3.4–8.1 in water) from woodland and grassland experiments at Rothamsted Experimental Station in the UK. No significant changes during storage were measured for total C and N. Large but erratic changes in exchangeable Na⁺ content between 1959 and 1991 were probably caused by contamination of the 1959 samples by perspiration and from sodium‐based glassware. Exchangeable K⁺ increased during storage but only by a small amount. Small changes in exchangeable Ca²⁺ and Mg²⁺ were measured in some samples but not in others. Generally the amount of exchangeable cations increased slightly during storage. This is probably linked to the decreases of 0.4 units in the pH of acid soils, which we attribute to the hydrolysis of approximately 0.25% of the exchangeable Al³⁺. A doubling of the amount of exchangeable Mn²⁺ during storage for 32 years was probably caused by re‐equilibration of Mn species. The most practicable way to prepare soil samples for long‐term storage is to dry them in air. However, those who study changes in soil by re‐analysing samples of the soil stored for a long time must (i) use the same methods of analysis, or (ii) demonstrate that different methods lead to the same results, and (iii) know what changes can arise during storage.     

Tall fescue forage mass in a grass-legume mixture: predicted efficiency of indirect selection

High fertilizer prices and improved environmental stewardship have increased interest in grass-legume mixed pastures. It has been hypothesized, but not validated, that the ecological combining ability between grasses and legumes can be improved by breeding specifically for mixture performance. This experiment examined the predicted efficiency of selection in a grass monoculture environment to indirectly improve tall fescue (Lolium arundinaceum (Schreb.) Darbysh.) forage mass in a grass-legume mixture. Heritability, genetic and rank correlations, and selection efficiencies were estimated for forage mass in a tall fescue half-sib population grown as spaced-plants overseeded with either turf-type tall fescue (monoculture) or alfalfa (mixture). Heritability for tall fescue forage mass in monoculture ranged from 0.32 to 0.70 and were always similar or greater than those in mixture (range 0.27–0.55) for four successive harvests and annual total. Genetic correlations between monoculture and mixture tall fescue forage mass varied with values of 0.48, 0.92, ?0.31, 0.70, and 0.25 in June, July, August, October, and annual total, respectively. Indirect selection efficiencies exceeded or approached direct selection for mixtures only in July and October (1.29, and 0.73, respectively). Whereas, indirect selection efficiencies were low in June, August, and annual forage mass (0.58, ?0.31, and 0.28, respectively). Moreover, low Spearman’s rank correlations (?0.03 to 0.35) indicated differing half-sib family performance between the monoculture and mixture environments. Results indicate that direct selection should be used to improve tall fescue forage mass in a grass-legume mixture, and support the hypothesis of increasing ecological combining ability by breeding for mixtures per se.     

Physiological processes associated with salinity tolerance in an alfalfa half‐sib family

We previously reported an alfalfa half‐sib family, HS‐B, with improved salt tolerance, compared to parental plants, P‐B. In this study, we conducted additional experiments to address potential physiological mechanisms that may contribute to salt tolerance in HS‐B. Vegetatively propagated HS‐B and P‐B plants were treated with a nutrient solution (control) or a nutrient solution containing NaCl (EC = 12 dS/m). Shoots and roots were harvested at various time points after treatment for quantification of proline, soluble sugar, and H₂O₂ using spectrophotometers. Subcellular localization and quantification of Na in roots were conducted using a Na⁺‐specific dye under a confocal microscope. HS‐B produced 86 and 89% greater shoot and root dry biomass, respectively, compared to parental plants, P‐B, under salinity in the greenhouse. Under saline conditions the HS‐B shoots accumulated 115% and roots 55% more soluble sugars than P‐B counterparts. The non‐saline HS‐B shoots, however, showed 72% less soluble sugars than the non‐saline P‐B plants. Under saline conditions HS‐B accumulated 39% less proline in shoots, while roots accumulated 56% more proline, compared to their P‐B parents. HS‐B plants also showed a greater reduction of stomatal conductance under mild saline stress. HS‐B shoots and roots contained 3–4 times less reactive oxygen species (H₂O₂) after salt treatment compared to P‐B plants. Sodium localization and distribution analysis using Na⁺‐specific dye revealed HS‐B plants accumulated 88% and 48% less Na⁺ in stele and xylem vessels compared to P‐B. The study provides insights into the potential mechanisms that may contribute to salt tolerance in HS‐B: maintaining RWC by accumulating soluble sugars while reducing transpiration, maintaining healthy status by reducing oxidative stresses, and preventing salt toxicity by reducing accumulation of Na⁺ inside root cells and xylem.     

Genetic diversity associated with in vitro and conventional bud propagation of Saccharum varieties using RAPD analysis

Polymorphisms in the genomic DNA of eight varieties maintained by conventional bud propagation (via rhizomes) and by in vitro shoot tip cultures were detected by RAPD analysis of sugarcane varieties. The study estimated the genetic diversity induced after in vitro multiplication of these varieties. Higher (28.9%) and lower (12%) numbers of polymorphic bands were detected in plants propagated via rhizomes; the genetic similarity estimate varying from 0.63 to 0.80. Plants of SP90‐3723 and SP91‐1049, or RB85‐5113 and SP90‐3723, varieties involving greater genetic distances may be indicated as progenitors in breeding programmes. In vitro multiplication of RB86‐7515, RB85‐5113, RB83‐5054 and SP86‐42 varieties increases genetic variability, while in vitro multiplication of SP91‐1049, SP90‐1638, RB92‐8064 and SP90‐3723 leads to genetic similarity. Results show that the RAPD technique is an effective tool for detecting polymorphism in sugarcane clones and it allows quick collection of the necessary information (more genetically divergent plant varieties) to guide new crossing in sugarcane breeding programmes.     

A rapid and robust method of identifying transformed Arabidopsis thaliana seedlings following floral dip transformation

Background  

The floral dip method of transformation by immersion of inflorescences in a suspension of Agrobacterium is the method of choice for Arabidopsis transformation. The presence of a marker, usually antibiotic- or herbicide-resistance, allows identification of transformed seedlings from untransformed seedlings. Seedling selection is a lengthy process which does not always lead to easily identifiable transformants. Selection for kanamycin-, phosphinothricin- and hygromycin B-resistance commonly takes 7–10 d and high seedling density and fungal contamination may result in failure to recover transformants.