Using Canonical Correspondence Analysis (CCA) to identify the most important DEM attributes for digital soil mapping applications

Topography has an important influence on the distribution of soils and their properties, especially in hilly lands, and related data are easily available, measurable and recognizable from digital elevation models (DEMs). To our knowledge, little attention has previously been paid to the effect of DEM attributes on the distribution of soils, using ordination methods. The objective of this study was to analyze relationships between topographical properties derived from DEM and soil distribution and to discuss their applicability in Digital Soil Mapping (DSM). The study was carried out in the Borujen area of central Zagros, Iran. A total of 13 plots (each one of 6.75 ha) were set up to calculate the percentages of the dominant soil series. Fifteen DEM attributes, including slope, aspect, curvature, maximum and minimum curvature, planform curvature, profile curvature, tangent curvature, wetness index, power index, sediment index, area solar radiation, direct radiation, diffuse radiation and direct duration were also computed. Canonical Correspondence Analysis (CCA) was used to summarize the data set and to evaluate the expected relationships. The results obtained show that there was a relatively strong correspondence between soils' series distribution and topographical properties. The DEM attributes that best related to the first axis were maximum curvature, slope and sediment index, all of which significantly positive correlated, and wetness index, direct duration and minimum curvature, all of which were negatively related. The second axis showed a negative trend with wetness index, direct duration and aspect, and a positive trend with sediment index and slope. These gradients were closely related to the first three canonical axes and explained 71.8% of the total variance of the soil series. The residual variance (28.2% of the total variance) was related to other soil forming factors, like parent material and vegetation cover, which were not investigated in this study. Considering that DEMs are still the most important source of environmental information, understanding the role of topographical factors in a region should help us to identify soils and their properties better and enable us to apply these derivates as input data in DSM.     

Effects of ammonia on growth and molting of Litopenaeus vannamei postlarvae reared under two salinity levels

ABSTRACT

Litopenaeus vannamei postlarvae were exposed to 0, 6, 13, and 19 mg/L total ammonia nitrogen (TAN) treatments. After 45 days, shrimp weight and length were lowest under TAN concentrations of 13 and 19 mg/L (P ≤ 0.05). Maximum weight gain was observed in control and 6 mg/L treatments. Mortality was highest (80.55 ± 4.80%) under 19 mg/L reared in 35 ppt salinity. Average intermolt periods of PLs exposed to 0, 6, 13, and 19 mg/L TAN were 11.5 ± 0.7, 10.8 ± 1.3, 9.4 ± 1.0, and 8.7 ± 0.6 days under 35 ppt and 11.1 ± 0.5, 10.7 ± 0.6, 10.1 ± 0.5, and 9.5 ± 0.2 days under 45 ppt salinity. Although TAN increased postlarvae molting frequency, its negative effects on the shrimp growth and survival of PLs was directly linked to its concentration and exposure duration. Higher salinity reduces the effects of ammonia and increases the survival.     

Partial characterization of phytoplasmas associated with lettuce and wild lettuce phyllodies in Iran

Phytoplasmas associated with lettuce phyllody (LP) and wild lettuce phyllody (WLP) in southern Iran were partially characterized by molecular analyses and host-range studies. Agents of both diseases were transmitted by Neoaliturus fenestratus , a leafhopper colonizing lettuce and wild lettuce, to lettuce, wild lettuce, sowthistle and periwinkle, but not to safflower, sunflower, calendula and sesame. Both phytoplasmas induced bud proliferation, virescence, phyllody and witches' broom in infected plants. Total DNA extracted from infected lettuce and wild lettuce or from vector tissues was subjected to PCR using phytoplasma-specific primer pair P1/P7 or nested PCR using P1/P7 followed by R16F2n/R16R2. PCR product of nested PCR (1·2 kbp) was subjected to restriction fragment length polymorphism (RFLP). RFLP analysis of nested PCR product identified the LP, WLP and N. fenestratus -associated phytoplasmas as members of the pigeon pea witches' broom group, 16SrIX. Phylogenetic analysis of the 16S rRNA gene sequence also clustered LP and WLP phytoplasmas with other known members of the 16SrIX group. While no significant differences could be detected between LP and WLP phytoplasmas, both isolates differed from Lebanese wild lettuce phyllody in molecular properties.     

Acquisition capability of the grapevine Flavescence dorée by the leafhopper vector Scaphoideus titanus Ball correlates with phytoplasma titre in the source plant

Flavescence dorée (FD) is one of the most economically important grapevine diseases in Southern Europe, and it is associated with phytoplasmas, phloem-limited wall-less bacteria. Recovery from disease naturally occurs in infected grapevines during the following seasons after infection. The capability of the leafhopper vector Scaphoideus titanus to acquire FD phytoplasma (FDP) from recovered and infected grapevines of Barbera and Nebbiolo varieties was investigated in North-western Italy vineyards monitored from 2007 to 2011. Pathogen concentration was quantified by real-time PCR in FDP-infected grapevines and broad beans, also used as source plants under controlled conditions, to correlate acquisition capabilities and phytoplasma titre in source plants. S. titanus acquired FDP from infected, but not from recovered, grapevines. FDP titre was higher in Barbera than in Nebbiolo and higher in summer than in spring, and acquisition efficiency and pathogen titre in source plants were positively correlated, both in field and laboratory conditions. Recovered plants do not represent a source of inoculum for the vector and therefore do not contribute to FDP spread. The inability of recovered plants to serve as FDP acquisition sources for the vector as well as the effect of the season and of the two grapevine varieties on the FDP acquisition efficiency are relevant results to re-design disease management practices, especially since insecticide treatments against the vector are not fully effective, and newly designed successful control strategies are required.     

Land cover changes in a forested watershed,southern Zagros,Iran

This study aims to investigate the land cover changes in relation to traditional utilization and livestock grazing, socioeconomic development, and demographic changes during recent decades in a forested watershed in the southern Zagros, Iran. Data on land cover change were collected through stereo interpretation with digital photogrammetric techniques applied to sets of scanned aerial photographs from 1969 and 1993 with a systematic grid of sample plots provided by GIS techniques. Efforts were made to mitigate errors in the interpretation. Field data were gathered in 2003 from woodland inventory, biophysical, and demographic data and in 2006 from interviews. The results show stability in crown cover density (%) and in the number of large trees, and an increase in the woodland class. The results may be related to a change in woodland utilization. Socioeconomic development, decrease in human and livestock population, and a change in the type of livestock have influenced the traditional pattern. Steep slopes partially limit human accessibility to woodland resources. Around 54% of the oak trees are in coppice form and natural regeneration of the trees is rare. Overgrazing and seed gathering have a negative effect on regeneration and endanger the future survival of the woodland. Copyright © 2008 John Wiley & Sons, Ltd.     

Spatial variability of soil microbial indices in common alder COMMON ALDER(Alnus glutinosa) stands using a geostatistical approach in northern Iran

Microbial indices and their spatial patterns are strongly affected by environmental factors. Spatial variability of soil properties is one of the most important causes of variability in soil microbial indices. This research was conducted in the Caspian forest to assess spatial variabilities and frequency distributions of microbial properties.Ninety soil samples were taken using a grid sampling design 40 9 40 m. Microbial indices, organic carbon,nitrogen and pH were determined. Soil variable distributions showed that microbial indices had abnormal distributions. Logarithmic transformation produced normal distribution. Spatial continuity using geostatistical(variogram) was studied and maps obtained by point kriging.The variograms revealed the presence of spatial autocorrelation. The results indicate that spatial dependence of soil microbial indices was affected by non-intrinsic factors and forest management procedures. The maps show that soil microbial indices and soil properties have spatial variability. The spatial pattern of microbial indices was correlated to organic carbon and nitrogen.     

Salinity threshold value of Quinoa (Chenopodium Quinoa ‎Willd.) at ‎various growth stages and the appropriate ‎irrigation method by saline ‎water

Salinity is one of the major agricultural problems in arid and ?semi-arid regions. Considering the variation of plant’s ?sensitivity to salinity during growth, a greenhouse study with completely randomized design? was conducted to determine the relative salinity tolerance of Quinoa (Chenopodium quinoa Willd.) at different growth stages from seedling establishment to maturity (establishment, flowering and seed filling) by evaluating the Salinity Threshold Value (STV). Eight levels of EC_i (i.e., Non-saline, 2, 4, 8, 12, 15, 20, 25 dSm^?1) with four replications and five levels (i.e., Non-saline, 10, 15, 20, 25 dSm^?1) with three triplications were applied at first and two last growth stages, respectively. A ?comparison was performed on some growth and yield parameters of plants irrigated by considering STV (T) and ?plants irrigated permanently by mentioned salinity levels regardless of STV (P) to choose ?which method (P or T) is better at each salinity level. The STV was ?evaluated 8, 20 and 15 dSm^?1 at each growth stage, respectively. Seedling of Quinoa was more sensitive to salinity than the mature plant. Therefore, after establishment Quinoa has the ?feasibility of irrigation by high-saline waters. The (P) ?method was suitable only if the freshwater was available during all growth period of the plant; otherwise at higher salinities irrigation should be performed by considering STV (T method) to minimize the intensity of growth and yield reduction and to prevent yield loss at very high salinities. To achieve this, if high-saline water is available it’s possible to ?use plant propagation techniques or cultivating Quinoa simultaneously with seasonal rainfall.?     

Naringin-loaded Poly(ε-caprolactone)/Gelatin Electrospun Mat as a Potential Wound Dressing: In vitro and In vivo Evaluation

In the present study, naringin, a flavonoid isolated from the grape and citrus fruit species, was incorporated with poly(ε-caprolactone)/gelatin composite mats in order to develop a potential wound dressing. The composite mats were prepared by electrospinning of poly(ε-caprolactone)/gelatin (1:1 (w/w)) solution incorporated with 1.50 %, 3 % and 6 % (w/w) of naringin. The electrospun mats were evaluated regarding their morphology, contact angle, water-uptake capacity, water vapor transmission rate, tensile properties, drug release, cellular response and in vivo wound healing activity. The study showed that after 2 weeks, the full-thickness excisional wounds of Wistar rats treated with the naringin-loaded dressings achieved a wound closure of higher than 94 % and the dressing containing 6 % (w/w) naringin had almost 100 % wound closure. The sterile gauze, as the control group, showed nearly 86 % of wound closure after this period of time. Our results provided evidence that supports the possible applicability of naringin-loaded wound dressing for successful wound treatment.     

Sero-prevalence and identification of <Emphasis Type="Italic">Ornithobacterium rhinotracheale</Emphasis> in broiler flocks in south-eastern Iran

Ornithobacterium rhinotracheale is a gram negative bacterial pathogen causing respiratory tract infections in poultry. Tracheal, lung and serum samples were obtained from 21 broiler flocks of 8 farms from a slaughterhouse located in south-eastern of Iran. Among 630 tracheal and lung samples from samples resulting from 315 chickens, 11 (3.5%) ORT isolates were identified using biochemical tests. The isolates originated from 9 (42.9%) flocks out of 4 farms. All of the isolates were recovered from tracheal swabs and showed an API 20NE identification biocode 0-2-2-0-0-0-4. Of the 420 serum samples examined by ELISA, 134 (31.9%) sera from 17 (81.0%) flocks were positive for ORT antibodies. These results indicate that ORT is present in most broiler flocks with respiratory disorders in southeast Iran.     

Molecular identification of a phytoplasma associated with Russian olive witches’ broom in Iran

Russian olive trees (Elaeagnus angustifolia) showing witches’ broom symptoms typical of phytoplasma infection were observed in the Urmia region of Iran. A phytoplasma named Russian olive witches’ broom phytoplasma (ROWBp-U) was detected from all symptomatic samples by amplification of the 16S rRNA gene and 16S/23S rDNA spacer region using the polymerase chain reaction (PCR) which gave a product of expected length. DNA from symptomless plants used as a negative control yielded no product. The sequence of the 16S rRNA gene and 16S/23S rDNA spacer region of ROWBp-U showed 99% similarity with the homologous genes of members of the aster yellows group. We also detected a phytoplasma in neighboring alfalfa plants (AlWBp-U) showing severe witches’ broom symptoms. An 1107 bp PCR product from the 16S rRNA gene showed 99% homology with the corresponding product in ROWBp-U, suggesting the presence of the same phytoplasma actively vectored in the area. Further observations showed that Russian olive trees with typical ROWB symptoms were present in an orchard near Tehran which is located over 530 km south-east of the original Urmia site. The corresponding sequence of this phytoplasma (ROWBp-T) showed 99% homology to that of the ROWBp-U. A sequence homology study based on the 16S rRNA gene and 16S/23S rDNA spacer region of ROWBp-U and other phytoplasmas showed that ROWBp-U is most closely related to the 16SrI group. To our knowledge, this is the first report of a phytoplasma infection in a member of the Elaeagnaceae.