Detection of Chlamydophila abortus in sheep and goat flocks in southern Italy by PCR using four different primer sets

An epidemiological survey was performed to detect the presence of Chlamydophila (C.) abortus and other members of the order Chlamydiales in ovine and caprine flocks with a history of abortion in southern Italy. Four pairs of primers were compared to evaluate their ability to detect Chlamydiales using purified DNA preparations and tissue samples from aborted foetuses with suspected chlamydial infections. As expected, amplification of DNA of the reference strain C. abortus using primer pairs U23F/23Sigr, 16SF2/23R, CTU/CTL and CpsiA/CpsiB produced fragments of about 600 bp, 585 bp, 1000 bp and 300 bp, respectively. The detection limits of the four PCR tests performed on serial DNA dilutions of the C. abortus reference strain were of 10 pg, 0.1 pg, 0.1 pg and 1 fg of DNA, respectively. The most sensitive amplification of DNA extracted from the organ tissues was obtained with primer pairs CpsiA/CpsiB, which detected Chlamydophila spp. DNA in all infected tissue samples. Only C. abortus was identified during the survey. The presence of this agent was confirmed in 3 out of 27 ovine and caprine flocks included in the survey suggesting that abortion due to C. abortus is uncommon in southern Italy.     

Estimating intrinsic susceptibility to extinction when little ecological information is available: The case of Neotropical freshwater stingrays (Chondrichthyes: Potamotrygoninae)

Determining the extinction risk of poorly known species is difficult, as data on both their biological traits and the threats to which they are exposed are often not available. Neotropical freshwater stingrays (potamotrygonins) represent such a challenge, as limited ecological data prevent formal assessments. Geographic range size (GRS) was computed for the first time for potamotrygonins (as a longitudinal extent of occurrence measured in km of river length) and, together with two other traits correlated with intrinsic susceptibility to extinction—body size, biological productivity (r_max)—was used to rank potamotrygonins according to their intrinsic susceptibility to extinction. Potamotrygonin GRS was only 6%–7% of that of marine elasmobranchs and is likely to be a significant driver of potamotrygonin extinction risk. The relationship between potamotrygonin GRS and body size differed from the expected triangular theoretical pattern; probably a result of the fragmented nature of freshwater habitats. Using K-medoids clustering, we identified seven groups of species; the most susceptible groups comprised the biggest species such as Potamotrygon brachyura and Paratrygon spp. Intrinsic susceptibility was also highest in the largest hydrographic basins, likely as a result of species with low r_max being more common there. Exposure to anthropogenic threats is highest for the species most intrinsically susceptible to extinction, which consequently have a high-extinction risk. We recommend the use of longitudinal extents of occurrence as standardized measurements of freshwater taxa GRS. Our ranking method, combining observed and predicted traits, may be a useful tool to assess poorly known taxa to assist conservation prioritization.     

Unanticipated effect of climate change on an aquatic top predator of the Atlantic rainforest

相似文献   

Detection of Chlamydophila abortus in sheep and goat flocks in southern Italy by PCR using four different primer sets

An epidemiological survey was performed to detect the presence of Chlamydophila (C.) abortus and other members of the order Chlamydiales in ovine and caprine flocks with a history of abortion in southern Italy. Four pairs of primers were compared to evaluate their ability to detect Chlamydiales using purified DNA preparations and tissue samples from aborted foetuses with suspected chlamydial infections. As expected, amplification of DNA of the reference strain C. abortus using primer pairs U23F/23Sigr, 16SF2/23R, CTU/CTL and CpsiA/CpsiB produced fragments of about 600 bp, 585 bp, 1000 bp and 300 bp, respectively. The detection limits of the four PCR tests performed on serial DNA dilutions of the C. abortus reference strain were of 10 pg, 0.1 pg, 0.1 pg and 1 fg of DNA, respectively. The most sensitive amplification of DNA extracted from the organ tissues was obtained with primer pairs CpsiA/CpsiB, which detected Chlamydophila spp. DNA in all infected tissue samples. Only C. abortus was identified during the survey. The presence of this agent was confirmed in 3 out of 27 ovine and caprine flocks included in the survey suggesting that abortion due to C. abortus is uncommon in southern Italy.