The role of neutral salts in the ion exchange between acid precipitation and soil

Theory and experimental results have shown that neutral salts in the precipitation or supplied to the ground by other means reduce the acidification of soils by acid precipitation. This salt effect is caused by the cation exchange occurring after the entry of the rain water into the soil.The acid components of precipitation consist of H₂SO₄, HNO₃ and HCl and of NH₄⁺ after nitrification in the soil. The magnitude of the salt effect depends on the relative bonding energy of H₃O⁺ and of Ca²⁺, Mg²⁺, Na⁺, K⁺, NH₄⁺ in the soil as well as on the concentrations of H₃O⁺ and the above cations in the precipitation. The salt effect may be considerable in very acid soils. It decreases with rising pH to become very small or negligible in neutral soils, chiefly due to the increasing bonding energy of H₃O⁺ in this direction.The adverse effect of acid precipitation, therefore, is likely to be less in very acid soils, such as podsols, than in slightly acid and neutral soils with low buffering capacity against pH change. Soil texture and calcite content are very important factors in this respect as fine material and calcite increase the buffering.     

A 13CO2 Enrichment Experiment to Study the Synthesis Pathways of Polyunsaturated Fatty Acids of the Haptophyte Tisochrysis lutea

The production of polyunsaturated fatty acids (PUFA) in Tisochrysis lutea was studied using the gradual incorporation of a ¹³C-enriched isotopic marker, ¹³CO₂, for 24 h during the exponential growth of the algae. The ¹³C enrichment of eleven fatty acids was followed to understand the synthetic pathways the most likely to form the essential polyunsaturated fatty acids 20:5n-3 (EPA) and 22:6n-3 (DHA) in T. lutea. The fatty acids 16:0, 18:1n-9 + 18:3n-3, 18:2n-6, and 22:5n-6 were the most enriched in ¹³C. On the contrary, 18:4n-3 and 18:5n-3 were the least enriched in ¹³C after long chain polyunsaturated fatty acids such as 20:5n-3 or 22:5n-3. The algae appeared to use different routes in parallel to form its polyunsaturated fatty acids. The use of the PKS pathway was hypothesized for polyunsaturated fatty acids with n-6 configuration (such as 22:5n-6) but might also exist for n-3 PUFA (especially 20:5n-3). With regard to the conventional n-3 PUFA pathway, Δ6 desaturation of 18:3n-3 appeared to be the most limiting step for T. lutea, “stopping” at the synthesis of 18:4n-3 and 18:5n-3. These two fatty acids were hypothesized to not undergo any further reaction of elongation and desaturation after being formed and were therefore considered “end-products”. To circumvent this limiting synthetic route, Tisochrysis lutea seemed to have developed an alternative route via Δ8 desaturation to produce longer chain fatty acids such as 20:5n-3 and 22:5n-3. 22:6n-3 presented a lower enrichment and appeared to be produced by a combination of different pathways: the conventional n-3 PUFA pathway by desaturation of 22:5n-3, the alternative route of ω-3 desaturase using 22:5n-6 as precursor, and possibly the PKS pathway. In this study, PKS synthesis looked particularly effective for producing long chain polyunsaturated fatty acids. The rate of enrichment of these compounds hypothetically synthesized by PKS is remarkably fast, making undetectable the ¹³C incorporation into their precursors. Finally, we identified a protein cluster gathering PKS sequences of proteins that are hypothesized allowing n-3 PUFA synthesis.     

From shallow to deep waters: habitats used by larval lampreys (genus Petromyzon and Lampetra) over a western European basin

Abstract –  Habitat requirements of lamprey ammocoetes (Petromyzon marinus and Lampetra genus) were investigated, for the first time, from shallow to deep waters, at different spatial scales across the Gironde‐Dordogne continuum, thanks to a water suction dredge. Fish‐habitat relationships were assessed through two complementary statistical analyses: habitat‐use curves and habitat suitability models using the Boosted Regression Trees (BRT) technique. Analyses were performed on a small‐size data set that was characterised by the low prevalence of lamprey. The sea lamprey larvae occurred in deeper areas than their Lampetra genus counterparts. ‘Pools’ of 2 m’ depth and more were optimal habitats for the former species. Among the environmental variables retained to model lamprey occurrences, the mesohabitat (a categorical variable) was demonstrated to be highly influential, in terms of fine grain‐size substratum and vegetation cover. These preliminary results suggest that monitoring using the water suction dredge method may contribute to sea lamprey conservation.     

Effects of supplemental alfalfa hay on the digestion of soybean hull-based diets by cattle

We evaluated the optimal level of alfalfa inclusion in soybean hull-based diets. In Exp. 1, 20 Holstein steers (319 kg of BW) were used in a complete block design. Treatments included a soybean hull mix (95.7% soybean hulls, 3% molasses, 0.5% urea, 0.8% mineral mix; DM basis) fed alone (100:0) or with 10.4, 20.7, or 30.9% (DM basis) coarsely chopped alfalfa hay (90:10, 80:20, and 70:30, respectively) or alfalfa alone (0:100). Diets were fed once daily at 1.75% (DM basis) of BW. In some cases, orts were present, which caused DM, OM, and NDF intakes to decrease (linear, P < 0.05) as alfalfa was added to the diets. Digestibilities of DM, OM, and NDF decreased linearly (P < 0.05) as alfalfa was added to the diets, but quadratic responses (P < 0.05) indicated that positive associative effects occurred between soybean hulls and alfalfa. Liquid dilution rates increased (linear, P < 0.05) with alfalfa additions to the diets and also demonstrated positive associative effects between soybean hulls and alfalfa (quadratic, P < 0.05). Solid passage rates were similar for 100:0 and 0:100 but were increased (quadratically and cubically, P < 0.05) when combinations of soybean hulls and alfalfa were fed. In Exp. 2, in vitro NDF digestibilities were measured for soybean hulls, alfalfa, and a blend of 85% soybean hulls and 15% alfalfa, each with no N source or supplemented with casein or urea to ascertain the effects of protein from alfalfa on digestibility. Disappearances were increased (P < 0.05) by addition of urea or casein, but no interactions between substrate and N supplement were observed. Addition of 30% alfalfa to diets consisting primarily of soybean hulls led to positive associative effects on diet digestibility, but alfalfa additions led to increased liquid and solid passage rates, suggesting that the benefit was not a result of slower passage of soybean hulls from the rumen.     

Soybean mosaic virus Helper Component-Protease Alters Leaf Morphology and Reduces Seed Production in Transgenic Soybean Plants

ABSTRACT Transgenic soybean (Glycine max) plants expressing Soybean mosaic virus (SMV) helper component-protease (HC-Pro) showed altered vegetative and reproductive phenotypes and responses to SMV infection. When inoculated with SMV, transgenic plants expressing the lowest level of HC-Pro mRNA and those transformed with the vector alone initially showed mild SMV symptoms. Plants that accumulated the highest level of SMV HC-Pro mRNA showed very severe SMV symptoms initially, but after 2 weeks symptoms disappeared, and SMV titers were greatly reduced. Analysis of SMV RNA abundance over time with region-specific probes showed that the HC-Pro region of the SMV genome was degraded before the coat protein region. Transgenic soybean plants that expressed SMV HC-Pro showed dose-dependent alterations in unifoliate leaf morphologies and seed production where plants expressing the highest levels of HC-Pro had the most deformed leaves and the lowest seed production. Accumulation of microRNAs (miRNAs) and mRNAs putatively targeted by miRNAs was analyzed in leaves and flowers of healthy, HC-Pro-transgenic, and SMV-infected plants. Neither expression of SMV HC-Pro nor SMV infection produced greater than twofold changes in accumulation of six miRNAs. In contrast, SMV infection was associated with twofold or greater increases in the accumulation of four of seven miRNA-targeted mRNAs tested.     

A predator unmasked: life cycle of Bdellovibrio bacteriovorus from a genomic perspective

Predatory bacteria remain molecularly enigmatic, despite their presence in many microbial communities. Here we report the complete genome of Bdellovibrio bacteriovorus HD100, a predatory Gram-negative bacterium that invades and consumes other Gram-negative bacteria. Its surprisingly large genome shows no evidence of recent gene transfer from its prey. A plethora of paralogous gene families coding for enzymes, such as hydrolases and transporters, are used throughout the life cycle of B. bacteriovorus for prey entry, prey killing, and the uptake of complex molecules.