Production of monoclonal antibody against recombinant bovine sex-determining region Y (SRY) and their preferential binding to Y chromosome-bearing sperm

Separation of X and Y chromosome-bearing sperm is an appropriate method for the selection of desired sex of offspring to increase the profit in livestock industries. The purpose of this study was the production of a monoclonal antibody against recombinant bovine sex-determining region Y protein for separation Y sperm. The hybridoma cells from splenocytes of immunized female's balb/C mice and Sp2/0 cells were made. The binding affinity of our monoclonal antibody (mAbSRY2) was compared with mouse monoclonal SRY-15. The Western blot method indicated that mAbSRY2 successfully detected the rbSRY protein. The specificity and sensitivity of mAbSRY2 is comparable to SRY-15 commercially ones. The SRY gene in 100% of bull semen contains the Y chromosome that had the strongest binding affinity to mAbSRY2 was synthesized. In other words, the binding affinity of semen contains the X sperms near the negative control. In general, this immunological method can help to separate X from Y sperms. However, the mAbSRY2 is bind to Y-bearing sexed sperm, but in the future; the sexed sperms need to apply in farms.     

Nutrients management strategies to improve yield and quality of sugar beet in semi-arid regions

The objective of this study was to evaluate the effects of organic and inorganic fertilizers on the yield and quality of sugar beet genotypes (Beta vulgaris L.). Therefore, a field trial was carried out in Peshawar, Pakistan, during the winters in 2012–2013. The field experiment was conducted in a randomized complete block design with split plots, having three replications. Fertilizer treatments (control, composted manure Higo Organic Plus at 5 t ha^?1, Maxicrop Sea Gold seaweed extract at 5 L ha^?1, farm yard manure at 10 t ha^?1, inorganic nitrogen–phosphorus (NP) at 90:60 kg ha^?1, NP at 120:90 kg ha^?1 and NP at 150:120 kg ha^?1) were allotted to main plots, while genotypes (Sandrina, Serenada and Kawe Terma) were allotted to the sub-plots. Plots treated with the application of NP at 120:90 kg ha^?1 produced the highest beet yield (76.4 t ha^?1) and sugar yield (11.1 t ha^?1), and had the second highest polarizable sugar content (14.52%) and more economic return (Rs. 553,000 per hectare) as compared to control plots. Sugar beet genotype Serenada had significantly higher beet yield (55.5 t ha^?1) and sugar yield (7.9 t ha^?1) and a higher economic return (Rs. 380,000 per hectare) than the other genotypes. Sugar beet genotype Serenada supplied with NP at 120:90 kg ha^?1is recommended for the general cultivation in the agro-climatic conditions of Peshawar valley.     

Simultaneous use of plant growth promoting rhizobacterium and nitrogenous fertilizers may help in promoting growth,yield, and nutritional quality of okra

This study was conducted to evaluate the simultaneous use of plant growth promoting rhizobacterium (QS1) and different combinations of urea-nitrogen and biogas slurry-nitrogen for improving growth, yield, and nutritional quality of field grown okra. The isolate QS1 was identified as Bacillus sp. QS1 based on its ribosomal ribonucleic acid (rRNA) sequence analysis. Results revealed that among the combinations, the application of 50% urea-nitrogen + 50% biogas slurry-nitrogen was optimal for improving crop performance. This combination significantly (p ≤ 0.05) promoted okra growth viz. plant height (69.63–80.03 cm), no of branches per plant (14–18), shoot fresh weight (86.66–136.25 g/plant), root fresh weight (22.5–26.58 g/plant), and fruit yield (8.5–13.5 kg/plot) compared to the plants receiving 100% urea-nitrogen. The interactive effective of this nitrogen combination and QS1 inoculation produced the highest growth and yield response. Similarly, the same treatment improved nitrogen, phosphorus, potassium, and protein contents in shoot and fruit of okra compared to other treatments.     

Spatial and temporal variation in otolith chemistry and its relationship with water chemistry: Stock discrimination of Sperata aor

Long‐whiskered catfish, Sperata aor (Hamilton 1822), is commercially important in food, ornamental and sport fisheries. The fish is mainly caught from the wild populations because its aquaculture practices are not commercialised. Inland fishery in the Ganga basin is mostly unorganised; hence, no published report is available on the trend of S. aor production from the selected habitat. In India, S. aor has been categorised vulnerable mainly due to natural and anthropogenic threats. Otolith chemistry shows variation with changing physico‐chemical conditions of the fish habitat. Therefore, the present study was conducted with the objective to analyse spatio‐temporal variations in water chemistry in relation to environmental factors; relationship between water and otolith chemistry; and spatio‐temporal variations in otolith chemistry to discriminate the stocks of S. aor inhabiting the River Ganga. Most of the element: Ca ratios in water samples did not show significant correlations with environmental factors, viz. temperature and conductivity. Only few element: Ca concentrations in otoliths were positively correlated to their corresponding ratios in the ambient water. In the selected study area, the S. aor populations were discriminated into four stocks possibly because of heterogeneous water chemistry at the sampling sites, and physical barriers. In the present study, otolith chemistry showed relatively low temporal variability as compared to spatial variability; thus, the classification accuracy of individuals to their original populations remained consistent over the selected time period. The findings could be useful in devising scientifically sound management strategies and/or any conservation plans for the vulnerable S. aor populations inhabiting the River Ganga.     

Quantification of organic carbon and primary nutrients in litter and soil in a foothill forest plantation of eastern Himalaya

The present study was an effort to understand the amount of litter fall and its subsequent decomposition and quantify the release of available nutrients and soil physicochemical characteristics in plantations of four forest tree species(Lagerstroemia parviflora, Tectona grandis, Shorea robusta and Michelia champaca) in the Chilapatta Reserve Forest of the Cooch Behar Wildlife Division in the Terai zone of West Bengal, India. The most litter(5.61 Mg ha~(-1))was produced by T. grandis plantation and the least(4.72 Mg ha~(-1)) by L. parviflora. The material turnover rate to the soil through decomposition from total litter was fastest during the first quarter of the year and subsequently decreased during the next two quarters. The material turnover rate was only 1 year, which indicates that more than90% of the total litter produced decomposed within a year.The available primary nutrient content in litter varied across the four plantations over the year. The plantations generally did not significantly influence the soil physical characteristics but did significantly influence the availability of primary nutrients and organic carbon at two depths(1–15 and16–30 cm) over the year. The availability of soil primary nutrients in the four plantations also increased gradually from the first quarter of the year to the third quarter and then decreased during the last quarter to the same level as in the first quarter of the year at both depths. The availability for soil organic carbon in the plantations followed a similar trend. The amount of litter produced and the material turnover in the soil in the different plantations differed, influencing the nutrient availability and organic carbon at the plantations. The amount of soil organic carbon was highest for T. grandis(2.52 Mg ha~(-1)) and lowest for L. parviflora(2.12 Mg ha~(-1)). Litter is the source of soil organic matter,and more the litter that is produced by the plantations, the higher will be the content and amount of soil organic carbon in the plantation.     

Flowering time in wheat (Triticum aestivum L.): a key factor for global adaptability

Wheat is one of the most widely cultivated crops and, being the staple diet of more than 40 countries, it plays an imperative role in food security. Wheat has remarkable genetic potential to synchronize its flowering time with favourable environmental conditions. This ability to time its flowering is a key factor for its global adaptability and enables wheat plant to produce satisfactory grain yield under very diverse temperature and soil moisture conditions. Vernalization (Vrn), photoperiod (Ppd) and earliness per se (Eps) are the three genetic systems controlling flowering time in wheat. The objective of this review is to provide comprehensive information on the physiological, molecular and biological aspects of the three genetic constituents of flowering and maturity time in wheat. Reviews written in the past have covered either one of the aspects; and generally focused on one of the three genetic constituents of the flowering time. The current review provides (a) a detailed overview of all three gene systems (vernalization, photoperiod and earliness per se) controlling flowering time, (b) details of the primer sequences, their annealing temperatures and expected amplicon sizes for all known markers of detecting vernalization and photoperiod alleles, and (c) an up to date list of QTLs affecting flowering and/or maturity time in wheat.     

Effects of interferon-γ knockdown on vaccine-induced immunity against Marek’s disease in chickens

Interferon (IFN)-γ has been shown to be associated with immunity to Marek’s disease virus (MDV). The overall objective of this study was to investigate the causal relationship between IFN-γ and vaccine-conferred immunity against MDV in chickens. To this end, 3 small interfering RNAs (siRNAs) targeting chicken IFN-γ, which had previously been shown to reduce IFN-γ expression in vitro, and a control siRNA were selected to generate recombinant avian adeno-associated virus (rAAAV) expressing short-hairpin small interfering RNAs (shRNAs). An MDV challenge trial was then conducted: chickens were vaccinated with herpesvirus of turkey (HVT), administered the rAAAV expressing shRNA, and then challenged with MDV. Tumors were observed in 4 out of 10 birds that were vaccinated with HVT and challenged but did not receive any rAAAV, 5 out of 9 birds that were administered the rAAAV containing IFN-γ shRNA, and 2 out of 10 birds that were administered a control enhanced green fluorescent protein siRNA. There was no significant difference in MDV genome load in the feather follicle epithelium of the birds that were cotreated with the vaccine and the rAAAV compared with the vaccinated MDV-infected birds. These results suggest that AAAV-based vectors can be used for the delivery of shRNA into chicken cells. However, administration of the rAAAV expressing shRNA targeting chicken IFN-γ did not seem to fully abrogate vaccine-induced protection.     

Sequence polymorphism in the ribosomal DNA internal transcribed spacers differs among Theileria species

The genomic region spanning the two ribosomal RNA internal transcribed spacers (ITS1 and ITS2) and the 5.8S rRNA gene was cloned and sequenced from sixteen Theileria isolates. Each Theileria species possessed ITS1 and ITS2 of unique size(s) and species specific nucleotide sequences. Varying degrees of ITS1 and ITS2 intra- and inter-species sequence polymorphism were found among ruminant Theileria species. The spacers were most polymorphic in the agent of tropical theileriosis, Theileria annulata, and were more conserved in two benign species, Theileria buffeli and Theileria sergenti Chitose. Phylogenetic analysis of the rDNA ITS1-5.8S rRNA gene-ITS2 region clearly separated each taxon, placing them in three clusters. One held T. annulata, Theileria parva, and Theileria mutans, with the latter two most closely related. The second held T. sergenti Ikeda, T. sergenti Chitose, and T. buffeli, with the latter two most closely related. The third cluster held the Theileria ovis isolates.     

Integrating animal movement with habitat suitability for estimating dynamic migratory connectivity

Context

High-resolution animal movement data are becoming increasingly available, yet having a multitude of empirical trajectories alone does not allow us to easily predict animal movement. To answer ecological and evolutionary questions at a population level, quantitative estimates of a species’ potential to link patches or populations are of importance.

Objectives

We introduce an approach that combines movement-informed simulated trajectories with an environment-informed estimate of the trajectories’ plausibility to derive connectivity. Using the example of bar-headed geese we estimated migratory connectivity at a landscape level throughout the annual cycle in their native range.

Methods

We used tracking data of bar-headed geese to develop a multi-state movement model and to estimate temporally explicit habitat suitability within the species’ range. We simulated migratory movements between range fragments, and calculated a measure we called route viability. The results are compared to expectations derived from published literature.

Results

Simulated migrations matched empirical trajectories in key characteristics such as stopover duration. The viability of the simulated trajectories was similar to that of the empirical trajectories. We found that, overall, the migratory connectivity was higher within the breeding than in wintering areas, corroborating previous findings for this species.

Conclusions

We show how empirical tracking data and environmental information can be fused for meaningful predictions of animal movements throughout the year and even outside the spatial range of the available data. Beyond predicting migratory connectivity, our framework will prove useful for modelling ecological processes facilitated by animal movement, such as seed dispersal or disease ecology.