Observation of three‐dimensional flow structures and effluent transport around fish cages using a towed ADCP and free‐fall multi‐parameter profiler

A field campaign was conducted around salmon cages, using a combination of a towed ADCP and a free‐fall multi‐parameter profiler, in order to investigate flow structures and the possible distribution of effluent materials. Two transect observations showed that hydrographic conditions changed dramatically within 5 days, from highly stratified open water conditions to weak stratification. Three‐dimensional observation revealed that flow was blocked behind the cages and that the blockage was reduced as the distance from the cages increased. The flow speed was positively correlated with the intensity of the backscattering signal. The R² value was high immediately behind the cages and decreased with distance from the cages. The flow time series behind the cages exhibited a k^–2 power law spectrum that was consistent with a typical internal wave spectrum. This suggests that eddies shed from the cages were highly influenced by stratification. We estimated the rate of kinetic energy dissipation, , from YODA Profiler data based on the Thorpe scale approach. We also estimated the eddy diffusivity coefficient, . Both and followed a lognormal probability density function. The mean was consistent with a one‐dimensional diffusion model assessed from the R² values of flow speed and backscatter intensity.     

Relationship between resistance to vole browsing and content of ether extract in the bark of larch species and hybrids

We determined the survival rate of tree families produced by the intra- and interspecific crossing of larch species damaged by browsing of vole (Clethrionomys rufocanus bedfordiae Thomas) and the contents of ether extracts (EE) in their bark. The average survival ofLarix gmelini var.japonica Pilg. (L. gmelini)×L. gmelini (G×G) was highest, followed by the hybridL. gmelini×L. leptolepis Gordon (G×L). The families of the hybrid G×L, which is considered suitable for silviculture in Hokkaido, Japan, showed significant differences in survival rates, suggesting that it is possible to produce improved varieties of the hybrid which are more resistant to vole browsing. The EE contents of the bark were under strong hereditary control, and the rank of the EE content among the various families hardly fluctuated between the location of the test fields. The correlation coefficient between the survival rates and the EE contents was highly significant (r=0.89,n=24,p<0.01), indicating that the EE content in the bark may be used as a possible index of resistance or susceptibility to vole browsing in larch plantations. A part of this report was presented at the 106th Annual Meeting of the Japanese Forestry Society, at Sapporo, April, 1995.     

Changes in the predicted function of the rumen bacterial community of Japanese Black beef cattle during the fattening stages according to Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses

We investigated changes in the predicted functions of the rumen bacterial community in Japanese Black beef cattle during fattening. Nine cattle were fed a high-concentrate diet during the early, middle, and late fattening stages consecutively (10–14, 15–22, and 23–30 months of age, respectively). The rumen fluid and solid samples collected at each stage were subjected to sequencing analyses. The sequencing results were clustered and classified into operational taxonomic units (OTUs). Representative sequences and a raw counting table for each OTU were submitted to the Piphillin website. The predicted functions were revealed by the Kyoto Encyclopedia of Genes and Genomes database as the ratio of the total sequence. In the early stage, “Biosynthesis of secondary metabolites” was significantly higher in the fluid fraction than in the solid fraction. “Two-component system” in the middle stage was significantly lower and “Purine metabolism” in the late stage was significantly higher in the fluid fraction than those in the solid fraction. The fluid fraction was significantly correlated with acetic acid, propionic acid, and bacterial metabolism, such as “Biosynthesis of secondary metabolites” and “Sugar metabolism.” Moreover, the solid fraction was correlated with “Purine metabolism” and “Biosynthesis of secondary metabolism”. These results suggest that the rumen bacterial community in Japanese Black beef cattle adapts to changes in rumen conditions by altering their functions in response to a long-term high-grain diet.     

Indole-3-acetic acid biosynthesis in <Emphasis Type="Italic">Aciculosporium take</Emphasis>, a causal agent of witches' broom of bamboo

 Aciculosporium take (Ascomycota; Clavicipitaceae) is a causal agent of witches' broom of bamboo plants. The symptoms of this disease are believed to be induced by plant hormones, particularly auxins. Indole-3-acetic acid (IAA) was identified in cultures of this fungus in an l-tryptophan-supplemented liquid medium. IAA production was confirmed on 30 isolates of A. take from various hosts and locations at levels up to 1 mg/l. The biosynthetic pathway of IAA in A. take culture was examined by analyzing intermediate products and by feeding experiments. The results showed that the indole-3-pyruvic acid pathway (l-tryptophan → indole-3-pyruvic acid → indole acetaldehyde → IAA) was the dominant pathway in A. take. Received: June 3, 2002 / Accepted: July 25, 2002     

Plant species identification using fecal DNAs from red-eared slider and Reeves’ pond turtle in agricultural canals for rural ecosystem conservation

Fecal DNA samples from the red-eared slider and Reeves’ pond turtle, suspected pests of lotus root paddies, were used to identify the plant species eaten by these turtles in order to develop a strategy for rural ecosystem conservation. The fecal samples were obtained from young and adult individuals (mostly female) of both species living in agricultural canals surrounding lotus root paddies in Tokushima Prefecture, Japan. The samples were screened for the presence or absence of DNA from nine plant species using PCR and plant species-specific primers for the rbcL gene of chloroplast DNA. In the red-eared slider, our analysis identified seven plant species in the fecal DNA samples of adults and three plant species in those of young individuals. In Reeves’ pond turtle, our analysis identified two plant species from adult fecal samples and one species from those of young individuals. Thus, adult red-eared sliders consume a greater range of plants than young red-eared sliders or Reeves’ pond turtles. Both turtle species, independently of age, consumed lotus plants and were likely to cause feeding damage to lotus roots. Considering the plant species detected in adult red-eared sliders and these plant habitats, we suggest that this adult turtle is likely to travel between the agricultural canals and the lotus root paddies. These findings will help the development of strategies for preventing damage to lotus roots by these turtles; furthermore, they indicate that fecal DNA analysis will be applicable to investigation of the feeding habits of other animal species.     

日本冲绳岛琉球松林台风干扰后的群落特点

为阐述亚热带地区琉球松林受到干扰后的演替规律,就日本冲绳地区琉球松人工林在强台风干扰后,林分结构和树种组成特点进行了调查分析。结果表明,琉球松林经台风干扰后演替形成两种群落类型,即琉球松-峨嵋木荷群落和琉球松-峨嵋木荷-蕨类群落;两者在林分结构和树种组成特点方面差异明显。琉球松-峨嵋木荷群落中,出现乔灌树种26种(DBH≥3．0cm),树种多样性指数为2．55,林下植被特别是草本层盖度低,没有蕨类植物分布。而琉球松-峨嵋木荷-蕨类群落中,出现乔灌树种33种,树种多样性指数为3．51,林下植被特别是草本层发育较好,并有大量蕨类植物分布,其盖度达55％。此外,经受干扰的琉球松林出现了大量的较耐荫的常绿阔叶树种,尤其是山茶科和樟科的树种,而没有出现本地天然常绿阔叶林的优势树种壳斗科的栲类(Castanopsis spp.)。充分说明强台风干扰促进了琉球松林向常绿阔叶林演替。     

Stock assessment of Japanese eels using Japanese abundance indices

The paper compiles a catch history of Japanese eels Anguilla japonica in East Asia and some Japanese relative abundance series. Maximum likelihood estimates of stock abundance of eels have been obtained using the abundance series and various biological parameters, such as growth, maturity and natural mortality. Age- and sex-structured models have been used to express the dynamics of stock abundance, and the Beverton and Holt model has been used to express the relationship between stock and recruitment. Data for estimations are standardized catch per unit effort of commercial fishery for exploitable stock (1954–2006 and 1968–2008) and for glass eel (1954–2010, 1972–2004, and 1973–1997). From the results of the base case scenario of estimations, the estimated stock size of individuals aged ≥1 year was 18.7 thousand tons in 2010, which was 24 % of the carrying capacity. The estimated stock size has recovered since 1990. Maximum sustainable yield was 4,180 tons if only the exploitable stock were utilized, and 266 tons if only the glass eel were utilized. These results and issues relating to estimation and management for reducing the fishery impact on stock are discussed.