Determination of vc and mating types of Cryphonectria parasitica isolates by multiplex PCR and their genetic diversity in 13 chestnut-growing provinces of Turkey

Vegetative compatibility (vc) and mating types and genetic diversity of Cryphonectria parasitica isolates were determined using 183 isolates obtained from 215 infected chestnut trees growing in 13 provinces of Turkey. Based on the cultural aspects, 143 of these isolates were evaluated as virulent whereas the remaining 40 isolates were hypovirulent. When vc types of 183 isolates were classically differentiated, 135 of them matched to EU-1 (82.3%), 29 of them to EU-12 (17.6%) vc type, whereas 19 of them did not match to the two. When molecular vic markers were used, all the isolates were assigned to two EU vc types; 149 to EU-1 (81.4%) and 34 (18.5%) to EU-12. Of the majority of the isolates, 134 (73.2%) had mating-type MAT-1, while 44 (24%) isolates had MAT-2 and 5 (2.8%) isolates had both mating types. The population analysis based on two DNA marker systems, Inter-Primer Binding Site and Start Codon Targeted Polymorphism, showed no intraspecific genetic variation among the C. parasitica isolates. The prevalence of two dominant vc types revealed by this study shows that biological control with hypovirulent EU-1 and EU-12 isolates will be significant for the country. The results might be helpful to chestnut breeders carrying out resistance breeding studies to manage this disease based on hypovirulence attributed to Cryphonectria hypovirus 1.     

Marine Anticancer Agents: An Overview with a Particular Focus on Their Chemical Classes

The marine environment is a rich source of biologically active molecules for the treatment of human diseases, especially cancer. The adaptation to unique environmental conditions led marine organisms to evolve different pathways than their terrestrial counterparts, thus producing unique chemicals with a broad diversity and complexity. So far, more than 36,000 compounds have been isolated from marine micro- and macro-organisms including but not limited to fungi, bacteria, microalgae, macroalgae, sponges, corals, mollusks and tunicates, with hundreds of new marine natural products (MNPs) being discovered every year. Marine-based pharmaceuticals have started to impact modern pharmacology and different anti-cancer drugs derived from marine compounds have been approved for clinical use, such as: cytarabine, vidarabine, nelarabine (prodrug of ara-G), fludarabine phosphate (pro-drug of ara-A), trabectedin, eribulin mesylate, brentuximab vedotin, polatuzumab vedotin, enfortumab vedotin, belantamab mafodotin, plitidepsin, and lurbinectedin. This review focuses on the bioactive molecules derived from the marine environment with anticancer activity, discussing their families, origin, structural features and therapeutic use.     

Composting and Value-Added Utilization of Manure From a Swine Finishing Facility

Swine manure and wood shavings used as a drying bed were removed from a High-Rise? hog facility following two production cycles. The manure was composted in aerated pilot-scale vessels for four weeks or a mechanically turned windrow for ten weeks. Total dry matter losses during the pilot-scale studies were 30 and 32.5 % for continuously and intermittently aerated systems, respectively. Compost from both systems was stable with emission rates of 0.07-0.11 mgCO₂ h^?1 g_vs^?1. Moisture, O₂, CO₂ and NH₃ use/losses during the process as well as chemical properties of the initial and composted manure are presented. Incorporation of the compost at a 5% amendment rate (v/v) into a standard pine bark container medium significantly (P = 0.05) increased growth of two woody plant species. Higher amendment rates were toxic to some plants due to high initial NH₄⁺ concentrations in the medium. The compost significantly (P=0.05) increased growth and suppressed Pythium root rot of poinsettia when incorporated at 10% (v/v) into a standard sphagnum peat mix. The compost can be utilized as a value-added disease-suppressive product in the ornamentals industry.     

Composting Short Paper Fiber with Broiler Litter and Additives: Part I: Effects of Initial pH and Carbon/Nitrogen Ratio On Ammonia Emission

Short paper fiber (SPF), a by-product of the paper mill industry, was cocomposted with broiler litter (BL) to determine decomposition rate and NH₃-N loss as functions of C/N ratio and pH of the compost mixes. The SPF generally had a high C/N ratio >200 while the BL, consisting of bedding material (sawdust) and poultry manure, had a low C/N ratio of 10–12. A total of seven series (27 tests) of pilot-scale studies were conducted using two different SPFs mixed with BL. Additives used for pH control were alum (aluminum sulfate), HiClay® Alumina and sulfuric acid. Mixing ratios [SPF/(SPF+BL), kg/kg(dry basis)] used were 0.8 to 0.4. Test conditions were C/N of 17 to 49, pH of 6.6 to 8.3, initial temperatures of ?1 to 22°C, composting temperature of 60°C, water content of 50-55% w.b. and remixing two times per week. Composting temperature was controlled using forced ventilation with a high/low fan setting. Composting trials lasted two weeks. Ammonia loss, O₂, CO₂, compost temperatures and dry solids loss were measured. Evaluations of ammonia emissions versus initial C/N and pH showed: (1) NH₃-N loss decreased as initial C/N increased, even above C/N = 38; (2) NH3-N loss decreased rapidly below pH = 7 and increased rapidly for initial pH above 8. Addition of alum and/or sulfuric acid was found to decrease NH₃- N loss while HiClay® Alumina had little or no effect. Results on dry solids loss are not presented in this article.     

Digestive enzyme activity of the red porgy (Pagrus pagrus, L.) during larval development under culture conditions

The ontogenic development of the main digestive enzymes (proteases, amylase and lipase) in the red porgy, Pagrus pagrus, larvae was assayed during the larval development. The green water technique was carried out for larval rearing and whole‐body homogenates were used for enzymatic assays in triplicate. Significant alterations in specific activities of all digestive enzymes measured during the period of this study were mostly related to metamorphosis and weaning. Trypsin‐ and chymotrypsin‐specific activities were first detected on day 3, together with opening of the mouth, and slightly increased until 25 days after hatching (DAH). After this period, the specific activities of these enzymes slightly decreased. Pepsin was first detected on day 28, concurrent with stomach formation, and a sharp increase was observed until 30 DAH. A slight decrease was measured from this date until the end of the experiment. Both amylase and lipase were measured for the first time on days 2 and 4 respectively, and the specific activities of these enzymes showed similar patterns during the first week of the study. Then, slight variations were observed until 30 DAH and while lipase‐specific activity declined, an increase in the specific activity of amylase was found until the end of the experiment. It is concluded that the variations observed in the specific activity of digestive enzymes were related to either metamorphosis, such as the formation of the stomach (28 DAH), or to changes in food composition. The profile of the developmental pattern of the main digestive enzymes detected in P. pagrus is similar to that described for other Sparid species.     

Effect of nitrogen fertilization on yield and nitrogen and water use efficiencies of winter wheat (durum and bread) varieties grown under conditions found in Central Anatolia

In order to evaluate the influence of different N rates on percent N derived from fertilizer (%Ndff) at different growth stages, on yields and the percent N use efficiency (%NUE) values of two winter wheat varieties (durum and bread), field experiments on fallow were carried out at four different locations in Central Anatolia, in the 1991–1992 and 1992–1993 growing seasons. At each site the rates of N (0, 40, 80 and 120?kg N/ha) were applied as ammonium sulphate [(NH₄)₂SO₄] using a Latin Square experimental design with four replicates. The total amounts of N fertilizer were applied once after seedling emergence at all experimental sites. Labelled (¹⁵NH₄)₂SO₄ fertilizer was applied to sub-plots from which %Ndff values were determined at tillering, booting, grain filling, and harvest stages. Yield sub-plots received unlabelled (NH₄)₂SO₄ from which total dry matter (seed and straw) and N yields were determined. Also the %NUE values were calculated by the ¹⁵N and "difference" methods at the harvest stage. Stored soil moisture at 0–90?cm depth, evapotranspiration and water use efficiency values were calculated as well. The results obtained showed that (1) Gerek-79 variety used both the applied N fertilizer and the available soil moisture more efficiently, (2) the percent NUE values obtained overall were generally less than 20 for both varieties and (3) with the ¹⁵N method, less variable %NUE values were obtained in comparison to the difference method.     

First Report on the Frequency and Molecular Detection of Neuropathogenic EHV-1 in Turkey

There has been an increase in outbreaks of neuropathogenic equine herpesvirus-1 (EHV-1) in the United States and Europe. However, the presence and frequency of neuropathogenic EHV-1 in Turkish horses are not known at present. This study aimed to investigate the frequency of EHV-1 and neuropathogenic strains of EHV-1 in the Marmara Region of Turkey. Samples were analyzed for the presence of EHV-1 and neuropathogenic EHV-1 by real-time PCR TaqMan probe assays. Overall detection rate of EHV-1 was 45.5% (51 of 112). The detection rates were 70.5% (24 of 34) in aborted fetuses, 53.3% (8 of 15) in neonatal deads, 66.6% (4 of 6) in foals, 40% (2 of 5) in dead mares, and 25% (13 of 52) in living mares. Overall detection rate of neuropathogenic EHV-1 was 7.8% (4 of 51), and the real-time PCR results were confirmed by sequencing. Neuropathogenic strains of EHV-1 were detected in the brain and lung of two mares with neurological disease but without a history of abortion, in the brain of a foal that died of respiratory disorder, and in the nasal swab from a mare with a history of abortion. On histopathology, nonpurulent meningoencephalitis, hemorrhages, and vasculitis were seen in the brain. In conclusion, results of this study indicated, for the first time, that the neuropathogenic EHV-1 is circulating in the Marmara Region of Turkey. The results of this study also show that the current risk for non-neuropathogenic strains is high, whereas risk for the neuropathogenic EHV-1-G₂₂₅₄ strain seems to be low. As outbreaks of EHV-1 continue in the Marmara region of Turkey, surveillance for neuropathogenic EHV-1 genotype should be maintained.     

Effects of Preharvest Foliar Calcium Applications on the Storage Quality of ‘0900 Ziraat’ Sweet Cherry Cultivar

The objective of this study was to investigate effects of foliar calcium application on storage of sweet cherry. Different concentrations of CaCl₂ (2.4, 3.2, and 4.0 g/l) and Ca(NO₃)₂ (3.4, 4.6, and 5.8 g/l) were applied six times by foliar spraying on leaves and fruits of the sweet cherry variety ‘0900 Ziraat’. Harvested fruits were packaged in 500 g plastic boxes and stored for four weeks at 0 ⁰C and 90–95?% relative humidity. During the experiment, flesh firmness, titratable acidity value (TA), pH, total soluble solids content (SSC) ratio, and weight losses were weekly assessed. The results indicated that there were positive effects of foliar calcium applications on fruit quality coupled with improved firmness, and enhancement of TA, an additional advantage for consumer acceptability.