Assessing heavy metal contamination in soils of the Zagreb region (Northwest Croatia) using multivariate geostatistics

The assessment of soil contamination and location of pollution sources represent a crucial issue in soil remediation. Topsoil samples were collected in the Zagreb area (Northwest Croatia) and the total contents of trace and major elements were determined. A multivariate geostatistical analysis was used to estimate soil chemical composition variability. Factorial Kriging Analysis (FKA) was used to investigate the scale-dependent correlation structure of some variables by modelling co-regionalization of ten chemical variables, co-kriging specific factors and mapping them. The FKA provided two regionalized factors at different spatial scales of variability: the first factor at shorter range for Zn, Pb, Cd, Cu and Ni indicated different sources of anthropogenic contamination, whereas Ca (mainly loading on the longer range factor) was related to the lithology and parent material composition. The methodology used has proved to be a useful tool to separate geological and anthropogenic causes of variation in soil heavy metal content and to identify common pollution sources.     

Application of the polymerase chain reaction to detect fowl adenoviruses.

The possibility of using the polymerase chain reaction (PCR) for the detection of fowl adenoviruses (FAdV) was tested. The optimal reaction parameters were evaluated and defined for purified genomic DNA of type 8 fowl adenovirus (FAdV-8), and then the same conditions were applied for nucleic acid extracted from infected cells. One hundred picograms of purified viral DNA, or 250 FAdV-8-infected cells, were detected by ethidium bromide staining of the PCR products in agarose gels. The sensitivity was increased to 10 pg purified viral DNA, or 25 infected cells, when the PCR products were hybridized with a specific labeled probe. Several field isolates of FAdV and the CELO virus (FAdV serotype 1) could be amplified by the same primers and conditions, but the size of the amplicons was smaller than that for the FAdV-8 PCR product. Other avian viruses and uninfected cell cultures tested negative.     

Alkaline Comet Assay as a Potential Tool in the Assessment of DNA Integrity in Freshwater Zooplankton Affected by Pollutants from Water Treatment Facility

Water, Air, & Soil Pollution - In this pilot study, we evaluated the usefulness of the alkaline comet assay as a biomonitoring tool at the level of plankton communities affected by varying...     

Classification of porcine reproductive and respiratory syndrome virus in Ontario using Bayesian phylogenetics and assessment of temporal trends

Porcine reproductive and respiratory syndrome virus (PRRSV) is one of the most important swine viruses globally, including in Ontario, Canada. Understanding the evolution and relation of the various PRRSV genotypes in Ontario can provide insight into the epidemiology of the virus. The objectives of this study were to i) describe the variability of PRRSV genotypes in Ontario swine herds, and ii) evaluate possible groupings based on PRRSV genomic data. Virus open reading frame 5 (ORF-5) sequences collected from 2010 to 2018 were obtained from the Animal Health Laboratory, University of Guelph and Bayesian phylogenetic models were created from these. The PRRSV population of Ontario was then categorized into 10 distinct clades. Model comparisons indicated that the model with a constant population assumption fit the data best, which suggests that the net change in the PRRS virus variation of the entire population over the last decade was low. Nonetheless, viruses grouped into individual clades showed temporal clustering during distinct time intervals of the entire study period (P < 0.01).     

A temporal study of Salmonella serovars from environmental samples from poultry breeder flocks in Ontario between 1998 and 2008

A temporal study was carried out to determine Salmonella prevalence, trends, major serovars, and their clusters from environmental samples, in poultry breeder flocks in Ontario between January 1998 and December 2008. Surveillance data were obtained from the Ontario Hatchery and Supply Flock Policy. Logistic regression with a random effect for flock was used to identify factors [poultry type, year (trend) and season] associated with the prevalence of Salmonella. A cluster detection test was used to identify clusters of common serovars. The period prevalence of Salmonella was 47.4% in broiler-breeder, 25.7% in layer-breeder, and 19.6% in turkey-breeder flocks. The overall trend in the prevalence of Salmonella was decreasing for all breeder types, due primarily to decreasing trends of Salmonella Heidelberg. The seasonal effects varied by year with the highest probability of Salmonella occurring in different seasons. The 4 most common serovars identified were Salmonella Heidelberg, Kentucky, Hadar, and Typhimurium in broiler-breeders; Salmonella Heidelberg, Brandenburg, Thompson, and Typhimurium in layer-breeders; and Salmonella Heidelberg, Saintpaul, Brandenburg, and Muenster in turkey-breeders. Salmonella Enteritidis was infrequently isolated in all poultry breeder types. Temporal clusters of different serovars were identified in all poultry breeder types. Clusters of Salmonella Heidelberg, Typhimurium, and Hadar from environmental samples from breeder flocks were detected during a similar period to clusters from hatchery fluff samples from the same population. Therefore, interventions at the breeder flock-level might help to reduce transmission of Salmonella from breeder flocks to hatcheries and possibly, to lower levels of the poultry production chain.     

Characterization of fowl adenoviruses isolated in Ontario and Quebec, Canada

Fowl adenoviruses (FAdV) are generally considered ubiquitous, but certain serotypes and strains are known to be associated with primary diseases, such as inclusion body hepatitis (IBH). Fifty-two FAdV isolates were collected from the provinces of Ontario and Quebec over a 4-year period. These 2 provinces have the largest poultry industries in Canada. Except for one virus, which originated from a guinea fowl, all other viruses were isolated from chicken samples. Most of these were from broilers, although some were from broiler breeders, and one was from layer pullets. Thirty-four isolates were from clinical IBH cases with the final laboratory diagnosis of IBH; however, for 18 isolates, the varied case diagnosis was seemingly unrelated to FAdV. All IBH-associated viruses had deoxyribonucleic acid (DNA) profiles compatible with FAdV species E (28 cases) or species D (6 cases), and the DNA fragment profiles of 26 species E viruses were indicative of serotype 8. Two viruses were serotype 6, as confirmed by virus neutralization. All species D viruses had a DNA profile similar to that of FAdV-2. The number of serotype 8 virus isolations has increased over the years, and by 2001 serotype 8 had become the dominant serotype in Ontario, and continues to be so. Moreover, this virus (FAdV-8) has shown a strong association with IBH.     

Inclusion body hepatitis as a primary disease in broilers in Saskatchewan, Canada

In recent years inclusion body hepatitis (IBH) has emerged as an economically important disease in Western Canada. Historically, infections with infectious bursal disease virus (IBDV) and chicken anemia virus (CAV) have been known to suppress the immune system of broilers and make them more susceptible to a secondary disease such as IBH. Recently it has been reported that virulent adenoviruses are able to cause IBH as a primary disease in broilers without apparent involvement of IBDV and CAV. The objectives of this study were to examine the possible association of IBH with IBDV and CAV infections in Western Canada and to identify adenoviruses involved in outbreaks. Serum samples from 17 broiler-breeder flocks and their progeny were collected when broilers were hatched and then again from broilers at the time of slaughter, and these samples were tested for IBDV and CAV antibodies by enzyme-linked immunosorbent assay (ELISA). Based on the ELISA titers the antibody response to vaccination against IBDV and CAV was at an expected level in all broiler flocks. Therefore, IBH outbreaks in these flocks were not due to inadequate levels of antibodies against IBDV and CAV. Moreover, there was no correlation found between occurrences of IBH outbreaks in broilers and their IBDV or CAV titers at the time of processing. Viruses that were isolated from livers of birds suffering from IBH could be classified into four different genotypes. Their hexon gene loop 1 sequences showed high percentages of identity to FAdV-7, FAdV-8a, FAdV-8b, and FAdV-11. The results of this study could not demonstrate an association of IBH with IBDV and CAV infections, but they supported the hypothesis that IBH in broilers in Western Canada is a primary disease with no apparent immunosuppressive involvement.     

Geochemistry of stream sediments within the reclaimed coastal floodplain as indicator of anthropogenic impact (River Neretva,Croatia)

Purpose

This study used multi-element signatures of stream sediments to assess both natural and human-induced impact on fluvial system in the River Neretva delta receiving environment over time. The river basin actually comprises several sub-catchments, and the geochemical features of major elements, trace metals radiometric and mineralogical characterisation of river bed sediments were used to assist the interpretation of the environment of deposition and its subsequent modifications caused by various anthropogenic pressures within the river basin.

Materials and methods

Five sites were chosen for sediment sampling at key locations within the study area with assumed undisturbed, continuous sedimentation process. At each of the sites, three representative cores were taken by scuba divers. Sample sites were selected in order to reflect the influence of different sub-catchments they belong to and the land-use pattern of the surrounding area. Samples were analysed for pH, redox-potential, granulometry, mineralogy, thermogravimetry, major and trace element concentrations and radionuclide activities. The univariate and multivariate statistics were applied. The geochemical normalisation of data was done using Al, the procedure based on calculation of the regression line of the metal on the normaliser followed by testing the ratios metal/normaliser on all data-points.

Results and discussion

All studied sediments are classified as silt, ranging from clayey silt to silt and sandy silt. Mineralogically, the sediments were dominated by carbonates and quartz. The chemical contaminant data are generally of good quality, mostly below guideline levels. Sedimentation rates were estimated using vertical distribution of ¹³⁷Cs activities. Normalisation of TMs done by using Al shows strong R ² _adj values for the regressions of Al and V, Al and Cr, and Al and Ni. However, Al cannot fairly explain the fluctuation of the concentrations of Cd, Cu, Pb and Zn in sediment cores from all of the sampling sites. Generally, inorganic scavengers such as clay minerals followed by Fe and Mn oxides and S (pyrite and gypsum) seem to be dominant factors controlling TMs in studied sediments.

Conclusions

Although the River Neretva delta occupies a rather small area, the geochemical features of major and trace elements and ¹³⁷Cs activities show complex sediment provenances. Each of the sampling sites reflect exactly different effects of anthropogenic intervention that particularly refer to the changes in river morphology and ecology, along with the altered flow regimes within the catchment on sediment loads and quality.

     

Pig and herd level prevalence of Toxoplasma gondii in Ontario finisher pigs in 2001, 2003, and 2004

The objective of this study was to estimate the apparent and true prevalence of exposure to Toxoplasma gondii in Ontario finisher pigs. During the study period (2001 to 2004), sera from 6048 pigs were tested with a commercial enzyme-linked immunosorbent assay (ELISA); 103 farms were included 1 to 3 times in the study. True prevalence was estimated using a Bayesian approach. Apparent prevalence at the pig level was 1.59% [95% confidence interval (CI): 0.45, 2.99] in 2001, 0.06% (95% CI: 0.00, 0.46) in 2003, and 0.26% (95% CI: 0.00, 0.82) in 2004. Apparent prevalence at the herd-level was 13.7% (95% CI: 7.5, 22.3) in 2001; 1.25% (95% CI: 0.03, 6.77) in 2003, and 3.75% (95% CI: 0.78, 10.6) in 2004. Similarly, posterior Bayesian estimates of true prevalence at the pig level were 1.7% [95% probability interval (PI): 1.2, 2.2] in 2001, 0.2% (95% PI: 0.04, 0.4) in 2003, and 0.3% (95% PI: 0.1, 0.7) in 2004. At the herd level, posterior estimates of prevalence were 11.6% (95% PI: 7.4, 16.8) in 2001, 0% (95% PI: 0.0, 2.5) in 2003, and 1.2% (95% PI: 0.0, 5.0) in 2004 when a herd cut-point > or = 1 was used. Exposure to T. gondii in finishing pig farms in Ontario appears to be infrequent.